Wall clock time and date at job start Tue Mar 31 2020 00:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47200 * 2 1 4 4 C 1.53006 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.09002 * 115.56020 * 29.30642 * 4 3 2 6 6 C 1.52997 * 117.49537 * 243.62514 * 4 3 2 7 7 C 1.53000 * 117.49776 * 175.00059 * 4 3 2 8 8 H 1.08990 * 117.49990 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.49504 * 214.97638 * 7 4 3 10 10 O 1.21286 * 120.00129 * 359.97438 * 9 7 4 11 11 N 1.34782 * 119.99988 * 179.97438 * 9 7 4 12 12 C 1.46499 * 119.99906 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.47263 * 35.00873 * 12 11 9 14 14 C 1.50703 * 109.46406 * 155.00122 * 12 11 9 15 15 H 1.08000 * 120.00595 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99680 * 180.02562 * 14 12 11 17 17 N 1.31520 * 120.00270 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00214 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47154 * 59.99724 * 18 16 14 20 20 H 1.48495 * 109.47517 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47017 * 299.99915 * 18 16 14 22 22 C 1.52996 * 109.47373 * 275.00149 * 12 11 9 23 23 F 1.39895 * 109.47205 * 60.00481 * 22 12 11 24 24 F 1.39904 * 109.46995 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47021 * 300.00128 * 22 12 11 26 26 H 1.09006 * 109.47462 * 59.99603 * 1 2 3 27 27 H 1.08995 * 109.47588 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.99960 * 1 2 3 29 29 H 1.09004 * 109.46965 * 240.00040 * 2 1 3 30 30 H 1.08996 * 109.47631 * 120.00408 * 2 1 3 31 31 H 1.08997 * 109.47180 * 60.00528 * 3 2 1 32 32 H 1.09003 * 109.47209 * 300.00001 * 3 2 1 33 33 H 1.08999 * 117.49685 * 145.02116 * 6 4 3 34 34 H 1.08999 * 117.52022 * 359.97438 * 6 4 3 35 35 H 0.97001 * 119.99599 * 0.02562 * 11 9 7 36 36 H 0.96998 * 120.00434 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5851 -0.4823 6 6 4.2769 2.0452 1.2150 7 6 4.2764 2.7945 -0.1190 8 1 3.6512 3.6838 -0.1968 9 6 5.5689 2.8388 -0.8926 10 8 6.0115 1.8263 -1.3926 11 7 6.2331 4.0037 -1.0290 12 6 7.4899 4.0466 -1.7805 13 1 7.4397 3.3446 -2.6129 14 6 7.7103 5.4398 -2.3112 15 1 6.9869 6.2157 -2.1085 16 6 8.8356 5.7239 -3.0555 17 7 9.7169 4.7793 -3.3020 18 14 9.1093 7.4509 -3.7127 19 1 9.1785 8.4070 -2.5786 20 1 10.3831 7.4946 -4.4747 21 1 7.9840 7.8243 -4.6069 22 6 8.6489 3.6627 -0.8586 23 9 8.4443 2.3694 -0.3660 24 9 9.8491 3.7043 -1.5763 25 9 8.7133 4.5639 0.2096 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.2121 1.5844 1.5331 34 1 3.6523 2.4422 2.0152 35 1 5.8793 4.8133 -0.6288 36 1 10.5084 4.9791 -3.8259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133827333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:12 Heat of formation + Delta-G solvation = -189.587704 kcal Electronic energy + Delta-G solvation = -22599.966337 eV Core-core repulsion = 18669.125542 eV Total energy + Delta-G solvation = -3930.840795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.45534 -48.09197 -47.76231 -40.95851 -38.26613 -36.44448 -34.70800 -34.43598 -30.56883 -28.27176 -26.65243 -25.26177 -23.14657 -22.66268 -21.49647 -21.10977 -19.32148 -18.89097 -18.68430 -18.35350 -17.53789 -16.87131 -16.27220 -16.00131 -15.81222 -15.09568 -15.08375 -14.99767 -14.60770 -14.50010 -14.32926 -14.17382 -14.05317 -13.91481 -13.66997 -13.14875 -13.05293 -12.88414 -12.77854 -12.62008 -12.24160 -12.17591 -11.90729 -11.64918 -11.62072 -11.14527 -10.95568 -10.72171 -10.69290 -10.07979 -8.22991 -6.54649 1.45775 1.47446 1.54128 1.57054 2.15349 2.37536 2.50549 2.88882 2.93591 3.59661 3.73872 3.79273 3.82757 3.92340 4.14703 4.23257 4.26775 4.33632 4.43154 4.67295 4.82643 4.89916 4.92625 4.97521 5.04471 5.10901 5.24277 5.39032 5.41418 5.44768 5.53131 5.56079 5.62868 6.50183 6.72443 7.14972 7.36019 8.69710 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.004408 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.510105 B = 6351.097769 C = 6840.708591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.118 4.118 5 H 0.088 0.912 6 C -0.135 4.135 7 C -0.193 4.193 8 H 0.154 0.846 9 C 0.526 3.474 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.250 3.750 13 H 0.044 0.956 14 C -0.563 4.563 15 H 0.093 0.907 16 C 0.014 3.986 17 N -0.876 5.876 18 Si 0.985 3.015 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.261 1.261 22 C 0.414 3.586 23 F -0.220 7.220 24 F -0.151 7.151 25 F -0.202 7.202 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.415 0.585 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -1.603 7.845 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.118 4.118 4 C -0.136 4.136 5 H 0.106 0.894 6 C -0.172 4.172 7 C -0.214 4.214 8 H 0.171 0.829 9 C 0.314 3.686 10 O -0.466 6.466 11 N -0.352 5.352 12 C 0.143 3.857 13 H 0.062 0.938 14 C -0.600 4.600 15 H 0.111 0.889 16 C -0.192 4.192 17 N -0.510 5.510 18 Si 0.808 3.192 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.186 1.186 22 C 0.357 3.643 23 F -0.202 7.202 24 F -0.132 7.132 25 F -0.184 7.184 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.251 0.749 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.046 -2.372 7.405 16.055 hybrid contribution 1.069 0.721 -0.265 1.317 sum -12.976 -1.650 7.140 14.903 Atomic orbital electron populations 1.21756 0.94692 1.02019 1.02234 1.21507 0.96585 0.96211 1.01870 1.21231 0.89569 0.97833 1.03195 1.22462 0.96176 0.93939 1.01063 0.89380 1.23199 1.02629 1.00956 0.90454 1.22337 0.95811 1.00620 1.02615 0.82867 1.20639 0.85862 0.82545 0.79543 1.90658 1.70153 1.35359 1.50393 1.45897 1.23164 1.11456 1.54680 1.19316 0.78240 1.00162 0.88015 0.93818 1.21214 1.09399 0.93648 1.35726 0.88860 1.26046 0.94699 1.02775 0.95654 1.70530 1.10880 1.34604 1.34974 0.85183 0.77721 0.77695 0.78579 1.18934 1.21007 1.18586 1.23305 0.88368 0.72311 0.80269 1.93055 1.95354 1.42177 1.89622 1.93376 1.48473 1.95572 1.75773 1.92986 1.97083 1.68647 1.59679 0.92691 0.92414 0.91839 0.93087 0.91700 0.89512 0.91285 0.90335 0.84255 0.74873 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.12 -2.06 5.89 30.59 0.18 -1.88 16 3 C -0.08 -1.41 5.50 30.60 0.17 -1.24 16 4 C -0.12 -2.90 5.25 -10.79 -0.06 -2.95 16 5 H 0.09 2.71 7.60 -2.39 -0.02 2.69 16 6 C -0.14 -3.10 9.88 30.60 0.30 -2.80 16 7 C -0.19 -5.27 5.91 -11.54 -0.07 -5.34 16 8 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 9 C 0.53 21.08 7.15 87.66 0.63 21.70 16 10 O -0.59 -28.92 14.83 -3.05 -0.05 -28.96 16 11 N -0.70 -28.96 4.98 -446.09 -2.22 -31.18 16 12 C 0.25 12.81 2.21 44.24 0.10 12.91 16 13 H 0.04 2.60 7.58 -2.39 -0.02 2.58 16 14 C -0.56 -28.74 8.46 25.60 0.22 -28.53 16 15 H 0.09 4.34 7.74 -2.91 -0.02 4.32 16 16 C 0.01 0.70 5.20 84.65 0.44 1.14 16 17 N -0.88 -49.18 9.50 21.45 0.20 -48.98 16 18 Si 0.99 40.61 29.54 68.60 2.03 42.63 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 20 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 C 0.41 21.91 2.81 71.98 0.20 22.11 16 23 F -0.22 -11.65 15.68 44.97 0.71 -10.95 16 24 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 25 F -0.20 -10.05 16.94 44.97 0.76 -9.29 16 26 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.16 7.88 -2.39 -0.02 1.14 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.14 2.14 8.03 -2.39 -0.02 2.12 16 35 H 0.41 14.21 8.54 -92.71 -0.79 13.42 16 36 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -66.08 314.69 5.14 -60.95 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.31 Total: 20.00 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 2.82 Total: 13.86 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.02 Total: -80.16 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.05 Total: -28.96 kcal Atomic # 9 Polarization: -30.37 SS G_CDS: 2.05 Total: -28.32 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -66.08 5.14 -60.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133827333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.643 kcal (2) G-P(sol) polarization free energy of solvation -66.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds