Wall clock time and date at job start Tue Mar 31 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.50703 * 109.47148 * 180.28037 * 5 3 2 7 7 H 1.08001 * 120.00037 * 359.97438 * 6 5 3 8 8 C 1.37875 * 120.00214 * 179.97438 * 6 5 3 9 9 N 1.31520 * 119.99609 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00201 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47136 * 90.00100 * 10 8 6 12 12 H 1.48500 * 109.46954 * 210.00202 * 10 8 6 13 13 H 1.48503 * 109.47010 * 330.00034 * 10 8 6 14 14 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 15 15 H 1.08996 * 109.47805 * 180.02562 * 14 2 1 16 16 C 1.53007 * 109.47236 * 300.00469 * 14 2 1 17 17 C 1.53788 * 113.60960 * 279.13529 * 16 14 2 18 18 C 1.53960 * 87.01603 * 220.04591 * 17 16 14 19 19 C 1.53783 * 87.11258 * 25.36486 * 18 17 16 20 20 C 1.53001 * 109.47063 * 59.99902 * 14 2 1 21 21 F 1.39899 * 109.46739 * 60.00463 * 20 14 2 22 22 F 1.39904 * 109.47266 * 180.02562 * 20 14 2 23 23 F 1.39898 * 109.47196 * 300.00130 * 20 14 2 24 24 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 25 25 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 26 26 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 27 27 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 28 28 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 29 29 H 0.97006 * 119.99301 * 180.02562 * 9 8 6 30 30 H 1.09001 * 112.84675 * 50.32485 * 16 14 2 31 31 H 1.08993 * 113.61430 * 334.56297 * 17 16 14 32 32 H 1.09001 * 113.61311 * 105.47353 * 17 16 14 33 33 H 1.09005 * 113.53290 * 270.81265 * 18 17 16 34 34 H 1.09000 * 113.74057 * 139.94425 * 18 17 16 35 35 H 1.09003 * 113.60929 * 220.09476 * 19 18 17 36 36 H 1.08998 * 113.61492 * 89.18426 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3648 3.6177 -0.0120 7 1 3.4266 3.4204 -0.0106 8 6 1.9052 4.9176 -0.0188 9 7 0.6122 5.1579 -0.0200 10 14 3.1191 6.3374 -0.0251 11 1 3.4418 6.7066 -1.4268 12 1 2.5187 7.5050 0.6687 13 1 4.3619 5.9292 0.6780 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0696 0.0009 16 6 1.8278 -2.0705 1.2502 17 6 2.5846 -1.6265 2.5132 18 6 2.7008 -3.1195 2.8708 19 6 2.5745 -3.4099 1.3659 20 6 1.8278 -2.0716 -1.2483 21 9 2.1659 -1.3384 -2.3909 22 9 2.5269 -3.2834 -1.2475 23 9 0.4524 -2.3272 -1.2482 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.7588 2.5257 -0.8967 28 1 0.7587 2.5344 0.8833 29 1 0.2889 6.0725 -0.0252 30 1 0.7508 -2.1570 1.3942 31 1 3.5431 -1.1519 2.3036 32 1 1.9721 -1.0559 3.2112 33 1 1.8626 -3.4926 3.4594 34 1 3.6685 -3.3965 3.2892 35 1 1.9538 -4.2768 1.1392 36 1 3.5303 -3.4236 0.8421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:37 Heat of formation + Delta-G solvation = -173.524505 kcal Electronic energy + Delta-G solvation = -23342.599380 eV Core-core repulsion = 19412.455138 eV Total energy + Delta-G solvation = -3930.144242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.99608 -47.52504 -47.42871 -39.80794 -38.27074 -35.04240 -33.03533 -30.76385 -28.47689 -26.42426 -25.74175 -25.19473 -23.83631 -21.79520 -19.76276 -19.09575 -18.24834 -18.13074 -17.37657 -16.67030 -15.94086 -15.73254 -15.18511 -14.75839 -14.48471 -14.34542 -14.21631 -13.96105 -13.90325 -13.62809 -13.57945 -12.82223 -12.67281 -12.55403 -12.42313 -12.23301 -12.00406 -11.89688 -11.50061 -11.30064 -10.84280 -10.80499 -10.64827 -10.48347 -10.35186 -10.00097 -9.28805 -8.83267 -8.47706 -8.40945 -6.09873 -4.09866 2.75796 3.15223 3.33034 3.38562 3.45954 3.47364 3.83186 4.12780 4.37862 4.44983 4.52633 4.58337 4.69750 4.79677 5.10104 5.20850 5.28383 5.40175 5.61694 5.62807 5.70860 5.78221 5.80787 5.95086 6.01093 6.05292 6.09197 6.36527 6.71803 7.08911 7.25040 7.71991 7.92467 8.24763 8.96400 9.01556 9.55294 11.02336 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.005203 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.214091 B = 5380.062978 C = 5791.659735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.623 5.623 3 C 0.523 3.477 4 O -0.535 6.535 5 C 0.011 3.989 6 C -0.511 4.511 7 H 0.075 0.925 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.902 3.098 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.111 3.889 15 H 0.136 0.864 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.141 4.141 19 C -0.133 4.133 20 C 0.440 3.560 21 F -0.178 7.178 22 F -0.182 7.182 23 F -0.184 7.184 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.262 0.738 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -17.342 2.702 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.359 5.359 3 C 0.315 3.685 4 O -0.410 6.410 5 C -0.028 4.028 6 C -0.549 4.549 7 H 0.093 0.907 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.730 3.270 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.003 3.997 15 H 0.154 0.846 16 C -0.145 4.145 17 C -0.160 4.160 18 C -0.178 4.178 19 C -0.171 4.171 20 C 0.384 3.616 21 F -0.160 7.160 22 F -0.164 7.164 23 F -0.165 7.165 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.738 -17.148 2.674 17.371 hybrid contribution 0.231 0.616 -0.408 0.774 sum -0.507 -16.532 2.266 16.695 Atomic orbital electron populations 1.21893 0.79005 1.03503 1.02162 1.48161 1.07182 1.03978 1.76568 1.22273 0.88605 0.85280 0.72305 1.90535 1.14880 1.86847 1.48696 1.19275 0.96812 0.87085 0.99581 1.21161 0.93863 0.89434 1.50477 0.90673 1.24995 0.95372 0.99031 0.95077 1.69957 1.12525 1.20516 1.50911 0.86420 0.81182 0.81215 0.78229 1.20567 1.21239 1.19658 1.22111 1.02025 0.85589 0.89936 0.84593 1.22989 1.01374 0.96172 0.94009 1.22874 1.00936 0.96352 0.95863 1.22844 1.02145 0.96612 0.96228 1.23022 1.01036 0.96147 0.96901 1.21285 0.74626 0.78592 0.87099 1.93211 1.92015 1.77013 1.53739 1.93150 1.79110 1.47372 1.96773 1.93141 1.32007 1.94494 1.96876 0.92641 0.91479 0.89482 0.93143 0.93121 0.92834 0.87828 0.89393 0.90956 0.90194 0.91180 0.91021 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 8.51 59.84 0.51 1.61 16 2 N -0.62 -10.72 2.68 -173.94 -0.47 -11.19 16 3 C 0.52 11.60 7.67 -10.98 -0.08 11.51 16 4 O -0.53 -13.36 14.79 5.55 0.08 -13.28 16 5 C 0.01 0.28 4.01 -29.03 -0.12 0.17 16 6 C -0.51 -14.56 8.92 -34.44 -0.31 -14.87 16 7 H 0.08 2.23 6.75 -52.49 -0.35 1.88 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.11 1.64 2.00 -67.93 -0.14 1.51 16 15 H 0.14 2.23 6.73 -51.93 -0.35 1.88 16 16 C -0.13 -1.48 2.87 -89.80 -0.26 -1.74 16 17 C -0.12 -1.44 7.65 -25.82 -0.20 -1.64 16 18 C -0.14 -1.31 8.09 -25.82 -0.21 -1.52 16 19 C -0.13 -1.33 5.87 -25.92 -0.15 -1.49 16 20 C 0.44 6.36 2.75 37.16 0.10 6.46 16 21 F -0.18 -3.03 17.24 2.25 0.04 -2.99 16 22 F -0.18 -2.40 14.78 2.25 0.03 -2.37 16 23 F -0.18 -2.50 14.74 2.25 0.03 -2.47 16 24 H 0.05 0.78 7.89 -51.93 -0.41 0.37 16 25 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 26 H 0.09 1.28 6.45 -51.93 -0.33 0.95 16 27 H 0.05 1.28 8.11 -51.92 -0.42 0.86 16 28 H 0.05 1.25 7.41 -51.93 -0.38 0.87 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.10 1.13 6.57 -51.93 -0.34 0.79 16 31 H 0.09 1.16 7.98 -51.93 -0.41 0.75 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.91 7.45 -51.93 -0.39 0.52 16 LS Contribution 304.34 15.07 4.59 4.59 Total: -1.00 -30.72 304.34 -5.46 -36.17 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.53 Total: -1.64 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.95 Total: 1.49 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.27 Total: -36.36 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.11 Total: -7.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.72 -5.46 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.350 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds