Wall clock time and date at job start Tue Mar 31 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.50703 * 109.47148 * 180.28037 * 5 3 2 7 7 H 1.08001 * 120.00037 * 359.97438 * 6 5 3 8 8 C 1.37875 * 120.00214 * 179.97438 * 6 5 3 9 9 N 1.31520 * 119.99609 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00201 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47136 * 90.00100 * 10 8 6 12 12 H 1.48500 * 109.46954 * 210.00202 * 10 8 6 13 13 H 1.48503 * 109.47010 * 330.00034 * 10 8 6 14 14 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 15 15 H 1.08996 * 109.47805 * 180.02562 * 14 2 1 16 16 C 1.53007 * 109.47236 * 300.00469 * 14 2 1 17 17 C 1.53788 * 113.60960 * 279.13529 * 16 14 2 18 18 C 1.53960 * 87.01603 * 220.04591 * 17 16 14 19 19 C 1.53783 * 87.11258 * 25.36486 * 18 17 16 20 20 C 1.53001 * 109.47063 * 59.99902 * 14 2 1 21 21 F 1.39899 * 109.46739 * 60.00463 * 20 14 2 22 22 F 1.39904 * 109.47266 * 180.02562 * 20 14 2 23 23 F 1.39898 * 109.47196 * 300.00130 * 20 14 2 24 24 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 25 25 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 26 26 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 27 27 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 28 28 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 29 29 H 0.97006 * 119.99301 * 180.02562 * 9 8 6 30 30 H 1.09001 * 112.84675 * 50.32485 * 16 14 2 31 31 H 1.08993 * 113.61430 * 334.56297 * 17 16 14 32 32 H 1.09001 * 113.61311 * 105.47353 * 17 16 14 33 33 H 1.09005 * 113.53290 * 270.81265 * 18 17 16 34 34 H 1.09000 * 113.74057 * 139.94425 * 18 17 16 35 35 H 1.09003 * 113.60929 * 220.09476 * 19 18 17 36 36 H 1.08998 * 113.61492 * 89.18426 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3648 3.6177 -0.0120 7 1 3.4266 3.4204 -0.0106 8 6 1.9052 4.9176 -0.0188 9 7 0.6122 5.1579 -0.0200 10 14 3.1191 6.3374 -0.0251 11 1 3.4418 6.7066 -1.4268 12 1 2.5187 7.5050 0.6687 13 1 4.3619 5.9292 0.6780 14 6 2.1975 -1.2687 0.0006 15 1 3.2691 -1.0696 0.0009 16 6 1.8278 -2.0705 1.2502 17 6 2.5846 -1.6265 2.5132 18 6 2.7008 -3.1195 2.8708 19 6 2.5745 -3.4099 1.3659 20 6 1.8278 -2.0716 -1.2483 21 9 2.1659 -1.3384 -2.3909 22 9 2.5269 -3.2834 -1.2475 23 9 0.4524 -2.3272 -1.2482 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.7588 2.5257 -0.8967 28 1 0.7587 2.5344 0.8833 29 1 0.2889 6.0725 -0.0252 30 1 0.7508 -2.1570 1.3942 31 1 3.5431 -1.1519 2.3036 32 1 1.9721 -1.0559 3.2112 33 1 1.8626 -3.4926 3.4594 34 1 3.6685 -3.3965 3.2892 35 1 1.9538 -4.2768 1.1392 36 1 3.5303 -3.4236 0.8421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:35 Heat of formation + Delta-G solvation = -191.118634 kcal Electronic energy + Delta-G solvation = -23343.362318 eV Core-core repulsion = 19412.455138 eV Total energy + Delta-G solvation = -3930.907181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.18325 -48.68316 -48.64933 -41.18120 -39.52757 -36.52219 -35.15819 -32.23327 -30.29014 -27.75498 -26.67841 -26.19536 -25.75095 -23.08977 -20.85766 -20.39563 -19.45148 -19.42596 -18.63310 -18.58006 -17.46636 -17.28142 -16.49437 -16.43652 -15.83737 -15.63690 -15.43813 -15.19748 -15.08472 -14.85045 -14.76319 -14.48564 -14.15242 -14.05001 -13.62430 -13.36161 -13.26065 -13.23192 -12.94494 -12.81896 -12.61052 -12.54692 -12.04998 -11.74823 -11.42186 -11.35095 -11.22853 -10.63592 -10.61808 -9.84205 -8.26257 -6.33586 1.39936 1.40831 1.43745 1.53292 1.74625 1.88233 2.41931 2.64131 2.93217 3.09347 3.20682 3.56326 3.64867 3.71895 3.90352 3.97942 4.14065 4.23616 4.37377 4.58859 4.74608 4.82124 4.84038 4.91519 5.02609 5.06076 5.10588 5.20639 5.23077 5.37304 5.53582 5.71983 5.94336 6.33373 6.78362 7.22656 7.36783 8.85658 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.005203 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.214091 B = 5380.062978 C = 5791.659735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.614 5.614 3 C 0.526 3.474 4 O -0.572 6.572 5 C 0.017 3.983 6 C -0.539 4.539 7 H 0.055 0.945 8 C 0.013 3.987 9 N -0.922 5.922 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.273 1.273 13 H -0.274 1.274 14 C 0.109 3.891 15 H 0.117 0.883 16 C -0.125 4.125 17 C -0.133 4.133 18 C -0.125 4.125 19 C -0.128 4.128 20 C 0.446 3.554 21 F -0.196 7.196 22 F -0.171 7.171 23 F -0.174 7.174 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.268 0.732 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -18.666 3.287 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.348 5.348 3 C 0.317 3.683 4 O -0.450 6.450 5 C -0.022 4.022 6 C -0.577 4.577 7 H 0.073 0.927 8 C -0.186 4.186 9 N -0.561 5.561 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.198 1.198 13 H -0.199 1.199 14 C 0.003 3.997 15 H 0.135 0.865 16 C -0.144 4.144 17 C -0.170 4.170 18 C -0.163 4.163 19 C -0.166 4.166 20 C 0.390 3.610 21 F -0.177 7.177 22 F -0.152 7.152 23 F -0.156 7.156 24 H 0.078 0.922 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.399 -18.514 3.258 18.851 hybrid contribution 0.379 0.970 -0.597 1.200 sum -1.020 -17.545 2.661 17.775 Atomic orbital electron populations 1.22122 0.76949 1.05014 1.02938 1.47935 1.08391 1.03645 1.74780 1.21684 0.87892 0.86115 0.72567 1.90512 1.16151 1.87602 1.50724 1.19061 0.96134 0.88110 0.98900 1.21370 0.93617 0.91277 1.51460 0.92690 1.25744 0.97152 1.01275 0.94406 1.70024 1.13785 1.21384 1.50949 0.85484 0.78910 0.78360 0.78517 1.19858 1.19790 1.19876 1.22291 1.00764 0.84783 0.91886 0.86496 1.23118 1.02535 0.96741 0.91986 1.22889 0.99830 0.98203 0.96105 1.22808 1.03448 0.94022 0.95978 1.23024 1.00757 0.95406 0.97414 1.21085 0.75062 0.78762 0.86070 1.93184 1.92235 1.77600 1.54712 1.93174 1.78934 1.46466 1.96656 1.93158 1.31221 1.94416 1.96771 0.92194 0.87923 0.90100 0.94097 0.93343 0.92340 0.86120 0.91652 0.91256 0.88309 0.90349 0.89330 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.94 8.51 127.77 1.09 3.03 16 2 N -0.61 -20.96 2.68 -822.61 -2.21 -23.17 16 3 C 0.53 23.91 7.67 87.66 0.67 24.59 16 4 O -0.57 -29.65 14.79 -3.04 -0.04 -29.69 16 5 C 0.02 0.87 4.01 29.10 0.12 0.99 16 6 C -0.54 -31.52 8.92 25.60 0.23 -31.29 16 7 H 0.05 3.38 6.75 -2.91 -0.02 3.36 16 8 C 0.01 0.75 5.46 84.65 0.46 1.21 16 9 N -0.92 -53.24 13.29 21.45 0.28 -52.95 16 10 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 14 C 0.11 3.16 2.00 44.99 0.09 3.25 16 15 H 0.12 3.91 6.73 -2.39 -0.02 3.89 16 16 C -0.12 -2.68 2.87 -10.26 -0.03 -2.71 16 17 C -0.13 -2.97 7.65 31.18 0.24 -2.73 16 18 C -0.13 -1.99 8.09 31.18 0.25 -1.73 16 19 C -0.13 -2.22 5.87 31.12 0.18 -2.04 16 20 C 0.45 12.25 2.75 71.98 0.20 12.45 16 21 F -0.20 -6.56 17.24 44.97 0.78 -5.79 16 22 F -0.17 -4.16 14.78 44.97 0.66 -3.50 16 23 F -0.17 -4.30 14.74 44.97 0.66 -3.64 16 24 H 0.06 1.61 7.89 -2.39 -0.02 1.59 16 25 H 0.10 2.06 5.95 -2.39 -0.01 2.05 16 26 H 0.08 2.33 6.45 -2.39 -0.02 2.32 16 27 H 0.04 2.14 8.11 -2.38 -0.02 2.12 16 28 H 0.05 2.46 7.41 -2.39 -0.02 2.44 16 29 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 30 H 0.12 2.21 6.57 -2.39 -0.02 2.19 16 31 H 0.06 1.76 7.98 -2.39 -0.02 1.74 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.55 7.45 -2.39 -0.02 1.53 16 Total: -1.00 -66.51 304.34 6.76 -59.75 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.10 Total: 6.92 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 3.50 Total: 5.01 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -1.92 Total: -76.12 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.04 Total: -29.69 kcal Atomic # 9 Polarization: -15.03 SS G_CDS: 2.10 Total: -12.93 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.51 6.76 -59.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.364 kcal (2) G-P(sol) polarization free energy of solvation -66.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds