Wall clock time and date at job start Tue Mar 31 2020 01:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76198 * 102.99829 * 2 1 4 4 C 1.39241 * 120.04727 * 179.97438 * 3 2 1 5 5 N 1.32010 * 120.07291 * 180.02562 * 4 3 2 6 6 C 1.32088 * 120.18135 * 359.66937 * 5 4 3 7 7 C 1.39137 * 120.09084 * 0.60524 * 6 5 4 8 8 N 1.38995 * 120.03524 * 179.68376 * 7 6 5 9 9 C 1.46499 * 120.00043 * 359.73664 * 8 7 6 10 10 H 1.08997 * 109.40995 * 324.85323 * 9 8 7 11 11 C 1.52959 * 109.41821 * 84.64152 * 9 8 7 12 12 C 1.53652 * 109.32660 * 183.83330 * 11 9 8 13 13 C 1.51269 * 108.31082 * 305.14051 * 12 11 9 14 14 C 1.37885 * 120.84892 * 231.38027 * 13 12 11 15 15 N 1.31516 * 119.99913 * 180.27944 * 14 13 12 16 16 Si 1.86798 * 119.99766 * 0.28022 * 14 13 12 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 13 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 13 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 13 20 20 C 1.51267 * 118.30147 * 51.65779 * 13 12 11 21 21 C 1.52964 * 109.41240 * 204.99500 * 9 8 7 22 22 N 1.32753 * 119.92716 * 359.41842 * 7 6 5 23 23 H 1.09007 * 109.47346 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47450 * 299.99896 * 1 2 3 25 25 H 1.09000 * 109.47733 * 59.99902 * 1 2 3 26 26 H 1.07998 * 119.96194 * 0.02562 * 4 3 2 27 27 H 1.07992 * 119.95582 * 180.32238 * 6 5 4 28 28 H 0.97007 * 120.00124 * 179.72625 * 8 7 6 29 29 H 1.09001 * 109.47998 * 303.68926 * 11 9 8 30 30 H 1.09003 * 109.47830 * 63.71358 * 11 9 8 31 31 H 1.09007 * 109.69461 * 185.52287 * 12 11 9 32 32 H 1.09007 * 109.78671 * 64.80813 * 12 11 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 13 34 34 H 1.09001 * 109.63015 * 68.11448 * 20 13 12 35 35 H 1.09007 * 109.62669 * 188.68873 * 20 13 12 36 36 H 1.09002 * 109.47682 * 56.31342 * 21 9 8 37 37 H 1.08996 * 109.49475 * 296.28284 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5415 2.1251 0.0005 5 7 3.8390 3.4112 0.0011 6 6 2.8762 4.3155 -0.0055 7 6 1.5436 3.9156 -0.0003 8 7 0.5314 4.8683 -0.0006 9 6 0.8675 6.2942 -0.0006 10 1 1.7686 6.4539 0.5914 11 6 1.1156 6.7582 -1.4368 12 6 1.5612 8.2286 -1.4263 13 6 0.5202 9.0354 -0.6824 14 6 -0.0275 10.1704 -1.2419 15 7 -0.9275 10.8623 -0.5779 16 14 0.5090 10.7252 -2.9430 17 1 -0.2235 11.9626 -3.3140 18 1 1.9689 10.9964 -2.9378 19 1 0.2075 9.6573 -3.9299 20 6 0.0999 8.5688 0.6938 21 6 -0.2888 7.0890 0.6087 22 7 1.2398 2.6233 -0.0004 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 4.3315 1.3887 0.0005 27 1 3.1237 5.3667 -0.0104 28 1 -0.3976 4.5889 -0.0010 29 1 1.8971 6.1458 -1.8867 30 1 0.1971 6.6579 -2.0150 31 1 1.6452 8.5943 -2.4498 32 1 2.5235 8.3190 -0.9222 33 1 -1.3124 11.6610 -0.9714 34 1 0.9292 8.6900 1.3907 35 1 -0.7556 9.1530 1.0331 36 1 -0.5025 6.7112 1.6085 37 1 -1.1742 6.9811 -0.0177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:10 Heat of formation + Delta-G solvation = 31.856319 kcal Electronic energy + Delta-G solvation = -19316.294783 eV Core-core repulsion = 16411.958885 eV Total energy + Delta-G solvation = -2904.335899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.79529 -37.81429 -34.89083 -33.78821 -31.93242 -30.11645 -29.48168 -29.09206 -27.10475 -24.77523 -23.53599 -21.81518 -21.59824 -19.68391 -18.09520 -17.62770 -16.70160 -16.17151 -15.78455 -15.07894 -14.81306 -14.55158 -14.35073 -13.69817 -13.45862 -13.16773 -12.89684 -12.71453 -12.49760 -12.18330 -11.84189 -11.47015 -11.42990 -11.15549 -11.07311 -10.86409 -10.73977 -10.52675 -10.32009 -10.09738 -9.76675 -9.12549 -9.05926 -8.86269 -8.57723 -8.17163 -7.41658 -6.20748 -4.12856 0.91224 1.27531 1.41133 2.01947 3.21564 3.27496 3.30487 3.31188 3.83234 4.30095 4.54693 4.61363 4.84439 4.99241 5.01598 5.06117 5.26895 5.42222 5.47833 5.60673 5.64996 5.91834 6.21791 6.31526 6.38666 6.53876 6.60805 6.68055 6.82348 6.90174 7.03798 7.25883 7.50302 7.52870 7.57630 7.68587 7.72473 8.04448 8.25028 8.84483 9.43621 10.88715 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033465 B = 0.003818 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.497021 B = 7331.302816 C = 7587.261107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.071 6.071 3 C 0.121 3.879 4 C -0.012 4.012 5 N -0.387 5.387 6 C -0.018 4.018 7 C 0.383 3.617 8 N -0.701 5.701 9 C 0.158 3.842 10 H 0.076 0.924 11 C -0.121 4.121 12 C -0.009 4.009 13 C -0.495 4.495 14 C 0.079 3.921 15 N -0.888 5.888 16 Si 0.891 3.109 17 H -0.291 1.291 18 H -0.273 1.273 19 H -0.274 1.274 20 C 0.014 3.986 21 C -0.113 4.113 22 N -0.522 5.522 23 H 0.102 0.898 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.164 0.836 27 H 0.171 0.829 28 H 0.401 0.599 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.022 0.978 33 H 0.266 0.734 34 H 0.007 0.993 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 -17.096 1.098 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.166 5.834 3 C -0.131 4.131 4 C -0.179 4.179 5 N -0.100 5.100 6 C -0.190 4.190 7 C 0.139 3.861 8 N -0.330 5.330 9 C 0.055 3.945 10 H 0.093 0.907 11 C -0.160 4.160 12 C -0.047 4.047 13 C -0.514 4.514 14 C -0.125 4.125 15 N -0.525 5.525 16 Si 0.719 3.281 17 H -0.218 1.218 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.024 4.024 21 C -0.151 4.151 22 N -0.251 5.251 23 H 0.120 0.880 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.181 0.819 27 H 0.188 0.812 28 H 0.237 0.763 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.486 -17.731 1.108 18.104 hybrid contribution -1.149 1.326 -1.018 2.028 sum 2.337 -16.405 0.090 16.571 Atomic orbital electron populations 1.23443 0.93663 1.05953 1.06866 1.85408 1.07907 0.98790 1.91315 1.23790 0.93112 0.98282 0.97938 1.22831 0.94023 0.93479 1.07548 1.68211 1.35266 1.01182 1.05350 1.23182 0.87722 1.00806 1.07269 1.19408 0.89682 0.87394 0.89644 1.45249 1.06443 1.04606 1.76661 1.21253 0.99730 0.75725 0.97827 0.90651 1.22131 1.00191 0.98880 0.94785 1.19684 0.96920 0.91406 0.96674 1.19998 1.21494 1.08458 1.01400 1.24838 0.94347 0.95777 0.97503 1.69812 1.27502 1.17097 1.38059 0.86657 0.78998 0.77843 0.84604 1.21783 1.19870 1.19998 1.19343 0.97970 0.89312 0.95771 1.21931 0.96303 0.99308 0.97603 1.68242 1.34539 1.00314 1.21968 0.87956 0.89438 0.89425 0.81879 0.81249 0.76326 0.94523 0.92446 0.95360 0.95972 0.92378 0.97414 0.91905 0.94343 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 10.04 101.05 1.01 -0.14 16 2 S -0.07 -0.76 22.56 -107.50 -2.43 -3.19 16 3 C 0.12 1.69 7.00 -16.76 -0.12 1.57 16 4 C -0.01 -0.16 10.97 -17.10 -0.19 -0.35 16 5 N -0.39 -6.07 10.48 -12.68 -0.13 -6.20 16 6 C -0.02 -0.29 9.94 -17.11 -0.17 -0.46 16 7 C 0.38 6.06 7.64 -154.73 -1.18 4.88 16 8 N -0.70 -10.82 5.24 -53.89 -0.28 -11.10 16 9 C 0.16 2.72 2.04 -67.97 -0.14 2.58 16 10 H 0.08 1.30 6.48 -51.93 -0.34 0.96 16 11 C -0.12 -2.27 5.41 -26.41 -0.14 -2.41 16 12 C -0.01 -0.19 5.62 -27.27 -0.15 -0.34 16 13 C -0.49 -12.20 5.50 -98.92 -0.54 -12.74 16 14 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 15 N -0.89 -24.52 12.73 55.43 0.71 -23.82 16 16 Si 0.89 20.54 26.80 -169.99 -4.56 15.98 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.01 0.32 5.97 -27.49 -0.16 0.16 16 21 C -0.11 -2.14 5.40 -26.63 -0.14 -2.28 16 22 N -0.52 -7.93 9.63 -11.09 -0.11 -8.04 16 23 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 24 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 25 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 27 H 0.17 2.60 6.08 -52.49 -0.32 2.28 16 28 H 0.40 5.80 8.73 -40.82 -0.36 5.45 16 29 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.03 0.61 5.17 -51.92 -0.27 0.35 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 312.45 15.07 4.71 4.71 Total: -1.00 -27.05 312.45 -9.10 -36.15 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.98 Total: 3.08 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.03 Total: -7.59 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.18 Total: -49.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.56 Total: 15.98 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.43 Total: -3.19 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.05 -9.10 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.008 kcal (2) G-P(sol) polarization free energy of solvation -27.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds