Wall clock time and date at job start Tue Mar 31 2020 01:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76198 * 102.99829 * 2 1 4 4 C 1.39241 * 120.04727 * 179.97438 * 3 2 1 5 5 N 1.32010 * 120.07291 * 180.02562 * 4 3 2 6 6 C 1.32088 * 120.18135 * 359.66937 * 5 4 3 7 7 C 1.39137 * 120.09084 * 0.60524 * 6 5 4 8 8 N 1.38995 * 120.03524 * 179.68376 * 7 6 5 9 9 C 1.46499 * 120.00043 * 359.73664 * 8 7 6 10 10 H 1.08997 * 109.40995 * 324.85323 * 9 8 7 11 11 C 1.52959 * 109.41821 * 84.64152 * 9 8 7 12 12 C 1.53652 * 109.32660 * 183.83330 * 11 9 8 13 13 C 1.51269 * 108.31082 * 305.14051 * 12 11 9 14 14 C 1.37885 * 120.84892 * 231.38027 * 13 12 11 15 15 N 1.31516 * 119.99913 * 180.27944 * 14 13 12 16 16 Si 1.86798 * 119.99766 * 0.28022 * 14 13 12 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 13 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 13 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 13 20 20 C 1.51267 * 118.30147 * 51.65779 * 13 12 11 21 21 C 1.52964 * 109.41240 * 204.99500 * 9 8 7 22 22 N 1.32753 * 119.92716 * 359.41842 * 7 6 5 23 23 H 1.09007 * 109.47346 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47450 * 299.99896 * 1 2 3 25 25 H 1.09000 * 109.47733 * 59.99902 * 1 2 3 26 26 H 1.07998 * 119.96194 * 0.02562 * 4 3 2 27 27 H 1.07992 * 119.95582 * 180.32238 * 6 5 4 28 28 H 0.97007 * 120.00124 * 179.72625 * 8 7 6 29 29 H 1.09001 * 109.47998 * 303.68926 * 11 9 8 30 30 H 1.09003 * 109.47830 * 63.71358 * 11 9 8 31 31 H 1.09007 * 109.69461 * 185.52287 * 12 11 9 32 32 H 1.09007 * 109.78671 * 64.80813 * 12 11 9 33 33 H 0.97001 * 119.99646 * 179.97438 * 15 14 13 34 34 H 1.09001 * 109.63015 * 68.11448 * 20 13 12 35 35 H 1.09007 * 109.62669 * 188.68873 * 20 13 12 36 36 H 1.09002 * 109.47682 * 56.31342 * 21 9 8 37 37 H 1.08996 * 109.49475 * 296.28284 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5415 2.1251 0.0005 5 7 3.8390 3.4112 0.0011 6 6 2.8762 4.3155 -0.0055 7 6 1.5436 3.9156 -0.0003 8 7 0.5314 4.8683 -0.0006 9 6 0.8675 6.2942 -0.0006 10 1 1.7686 6.4539 0.5914 11 6 1.1156 6.7582 -1.4368 12 6 1.5612 8.2286 -1.4263 13 6 0.5202 9.0354 -0.6824 14 6 -0.0275 10.1704 -1.2419 15 7 -0.9275 10.8623 -0.5779 16 14 0.5090 10.7252 -2.9430 17 1 -0.2235 11.9626 -3.3140 18 1 1.9689 10.9964 -2.9378 19 1 0.2075 9.6573 -3.9299 20 6 0.0999 8.5688 0.6938 21 6 -0.2888 7.0890 0.6087 22 7 1.2398 2.6233 -0.0004 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 4.3315 1.3887 0.0005 27 1 3.1237 5.3667 -0.0104 28 1 -0.3976 4.5889 -0.0010 29 1 1.8971 6.1458 -1.8867 30 1 0.1971 6.6579 -2.0150 31 1 1.6452 8.5943 -2.4498 32 1 2.5235 8.3190 -0.9222 33 1 -1.3124 11.6610 -0.9714 34 1 0.9292 8.6900 1.3907 35 1 -0.7556 9.1530 1.0331 36 1 -0.5025 6.7112 1.6085 37 1 -1.1742 6.9811 -0.0177 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:10 Heat of formation + Delta-G solvation = 16.028205 kcal Electronic energy + Delta-G solvation = -19316.981142 eV Core-core repulsion = 16411.958885 eV Total energy + Delta-G solvation = -2905.022257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.93062 -39.29039 -36.32396 -35.05745 -33.62321 -31.66819 -30.90465 -29.81322 -28.67742 -25.93678 -24.85066 -23.38626 -23.25116 -21.26394 -19.24666 -18.79746 -18.06581 -17.57955 -16.92680 -16.43757 -16.25483 -16.13243 -15.29626 -15.07033 -14.65351 -14.44773 -14.27301 -14.07572 -13.75387 -13.63202 -13.46783 -12.94566 -12.76769 -12.56575 -12.55214 -12.43050 -12.01944 -11.98653 -11.72309 -11.65216 -11.39571 -10.89083 -10.60244 -10.54885 -10.18429 -9.24890 -8.44417 -8.18136 -6.11735 -0.20305 0.27229 0.36201 1.19222 1.39418 1.41691 1.48246 2.04607 2.40056 2.69837 3.11106 3.44386 3.52137 3.73657 3.99110 4.12335 4.15408 4.30662 4.33081 4.35874 4.47889 4.69097 4.85979 4.92917 4.92989 4.99040 5.04352 5.20005 5.20975 5.27072 5.56746 5.60961 5.72077 5.76294 5.81858 6.32037 6.36290 6.52736 6.89372 6.94947 7.46602 8.92621 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033465 B = 0.003818 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.497021 B = 7331.302816 C = 7587.261107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.043 6.043 3 C 0.109 3.891 4 C -0.012 4.012 5 N -0.402 5.402 6 C -0.036 4.036 7 C 0.374 3.626 8 N -0.697 5.697 9 C 0.174 3.826 10 H 0.080 0.920 11 C -0.112 4.112 12 C -0.013 4.013 13 C -0.499 4.499 14 C 0.026 3.974 15 N -0.930 5.930 16 Si 0.938 3.062 17 H -0.296 1.296 18 H -0.266 1.266 19 H -0.268 1.268 20 C 0.010 3.990 21 C -0.101 4.101 22 N -0.527 5.527 23 H 0.132 0.868 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.190 0.810 27 H 0.170 0.830 28 H 0.407 0.593 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.026 0.974 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.007 0.993 35 H 0.030 0.970 36 H 0.057 0.943 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -19.865 0.668 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.194 5.806 3 C -0.144 4.144 4 C -0.180 4.180 5 N -0.115 5.115 6 C -0.206 4.206 7 C 0.130 3.870 8 N -0.327 5.327 9 C 0.069 3.931 10 H 0.098 0.902 11 C -0.151 4.151 12 C -0.051 4.051 13 C -0.519 4.519 14 C -0.173 4.173 15 N -0.569 5.569 16 Si 0.765 3.235 17 H -0.223 1.223 18 H -0.191 1.191 19 H -0.193 1.193 20 C -0.028 4.028 21 C -0.140 4.140 22 N -0.256 5.256 23 H 0.150 0.850 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.207 0.793 27 H 0.187 0.813 28 H 0.243 0.757 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.330 -20.520 0.673 20.983 hybrid contribution -1.369 1.980 -0.820 2.543 sum 2.961 -18.541 -0.147 18.776 Atomic orbital electron populations 1.23563 0.92285 1.07737 1.06353 1.85357 1.09319 0.95547 1.90333 1.24338 0.93206 0.99899 0.96954 1.23329 0.94970 0.93414 1.06274 1.68200 1.35544 1.01999 1.05770 1.23184 0.87904 1.01008 1.08493 1.19413 0.89562 0.87764 0.90218 1.44880 1.06726 1.03674 1.77410 1.20879 0.98919 0.76618 0.96655 0.90236 1.21986 1.00137 0.97129 0.95880 1.19719 0.96402 0.92808 0.96137 1.20630 1.21140 1.08095 1.02008 1.25539 0.94896 0.96397 1.00459 1.69946 1.29517 1.17889 1.39585 0.85876 0.78810 0.77323 0.81460 1.22313 1.19132 1.19313 1.19294 0.96642 0.91711 0.95153 1.21690 0.96632 0.96816 0.98816 1.68284 1.35080 1.00185 1.22052 0.85020 0.89865 0.89973 0.79316 0.81309 0.75716 0.92899 0.93382 0.95581 0.95060 0.92815 0.97425 0.95123 0.92482 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 10.04 113.37 1.14 -0.79 16 2 S -0.04 -0.79 22.56 -56.49 -1.27 -2.06 16 3 C 0.11 2.76 7.00 84.79 0.59 3.35 16 4 C -0.01 -0.31 10.97 84.91 0.93 0.63 16 5 N -0.40 -11.90 10.48 -194.04 -2.03 -13.93 16 6 C -0.04 -1.08 9.94 84.87 0.84 -0.23 16 7 C 0.37 11.17 7.64 132.96 1.02 12.19 16 8 N -0.70 -20.35 5.24 -324.41 -1.70 -22.05 16 9 C 0.17 5.73 2.04 44.97 0.09 5.82 16 10 H 0.08 2.61 6.48 -2.39 -0.02 2.59 16 11 C -0.11 -4.05 5.41 30.80 0.17 -3.88 16 12 C -0.01 -0.53 5.62 30.25 0.17 -0.36 16 13 C -0.50 -24.72 5.50 -16.17 -0.09 -24.81 16 14 C 0.03 1.36 5.46 84.66 0.46 1.82 16 15 N -0.93 -52.98 12.73 21.45 0.27 -52.70 16 16 Si 0.94 42.36 26.80 68.60 1.84 44.19 16 17 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 C 0.01 0.47 5.97 30.11 0.18 0.65 16 21 C -0.10 -3.76 5.40 30.66 0.17 -3.59 16 22 N -0.53 -14.94 9.63 -189.01 -1.82 -16.76 16 23 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.19 3.64 8.06 -2.91 -0.02 3.61 16 27 H 0.17 4.97 6.08 -2.91 -0.02 4.95 16 28 H 0.41 11.07 8.73 -92.70 -0.81 10.26 16 29 H 0.05 1.75 7.65 -2.39 -0.02 1.73 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.03 1.10 5.17 -2.38 -0.01 1.08 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.03 1.60 7.07 -2.38 -0.02 1.58 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -58.02 312.45 1.24 -56.79 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.28 Total: 15.74 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.67 Total: -9.21 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -5.28 Total: -105.45 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.84 Total: 44.19 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.27 Total: -2.06 kcal Total: -58.02 1.24 -56.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.815 kcal (2) G-P(sol) polarization free energy of solvation -58.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds