Wall clock time and date at job start Tue Mar 31 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35510 * 117.00018 * 2 1 4 4 N 1.32176 * 119.73825 * 0.26790 * 3 2 1 5 5 C 1.32485 * 121.73309 * 180.25042 * 4 3 2 6 6 N 1.38675 * 119.50031 * 179.75357 * 5 4 3 7 7 C 1.46500 * 120.00167 * 359.72669 * 6 5 4 8 8 C 1.53006 * 109.46998 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46626 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46957 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00340 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99773 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00296 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47086 * 59.99480 * 14 12 10 16 16 H 1.48494 * 109.47288 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46879 * 299.99424 * 14 12 10 18 18 C 1.39554 * 120.99795 * 359.47567 * 5 4 3 19 19 F 1.35093 * 120.32304 * 180.23086 * 18 5 4 20 20 C 1.37998 * 119.35976 * 0.25933 * 18 5 4 21 21 C 1.40260 * 119.73817 * 180.02562 * 3 2 1 22 22 C 1.43199 * 120.51241 * 0.03510 * 21 3 2 23 23 N 3.53383 * 165.69613 * 180.09912 * 2 1 3 24 24 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47447 * 300.00542 * 1 2 3 26 26 H 1.09000 * 109.46724 * 60.00559 * 1 2 3 27 27 H 0.97010 * 119.99923 * 179.72978 * 6 5 4 28 28 H 1.09000 * 109.47175 * 60.00057 * 7 6 5 29 29 H 1.09001 * 109.47297 * 299.99565 * 7 6 5 30 30 H 1.08993 * 109.46955 * 300.00226 * 8 7 6 31 31 H 1.09000 * 109.47050 * 60.00054 * 8 7 6 32 32 H 1.08993 * 109.47839 * 299.99931 * 9 8 7 33 33 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 34 34 H 0.97000 * 120.00540 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.79372 * 179.97438 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3193 2.3126 0.0054 5 6 1.8793 3.5133 0.0007 6 7 1.0741 4.6423 0.0015 7 6 -0.3842 4.5021 0.0014 8 6 -1.0300 5.8892 0.0030 9 6 -2.5529 5.7426 0.0023 10 6 -3.1890 7.1089 0.0033 11 1 -2.5690 7.9932 0.0039 12 6 -4.5625 7.2299 0.0034 13 7 -5.3174 6.1531 0.0022 14 14 -5.3509 8.9234 0.0039 15 1 -4.9252 9.6679 -1.2084 16 1 -6.8290 8.7812 0.0033 17 1 -4.9252 9.6672 1.2166 18 6 3.2672 3.6590 0.0007 19 9 3.8237 4.8900 0.0006 20 6 4.0656 2.5335 0.0003 21 6 3.4452 1.2744 -0.0005 22 6 4.2303 0.0769 -0.0019 23 7 4.8533 -0.8731 -0.0015 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.4764 5.5251 0.0020 28 1 -0.6967 3.9552 0.8910 29 1 -0.6968 3.9565 -0.8890 30 1 -0.7174 6.4344 0.8935 31 1 -0.7176 6.4364 -0.8864 32 1 -2.8652 5.1976 -0.8884 33 1 -2.8657 5.1952 0.8915 34 1 -6.2837 6.2381 0.0019 35 1 5.1422 2.6194 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157642248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:12 Heat of formation + Delta-G solvation = -25.624002 kcal Electronic energy + Delta-G solvation = -20394.399583 eV Core-core repulsion = 16921.357974 eV Total energy + Delta-G solvation = -3473.041609 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.01510 -40.98670 -38.49720 -36.97271 -36.02532 -33.80677 -32.52305 -31.59149 -29.87098 -27.59421 -26.57325 -24.17681 -23.72559 -22.41618 -20.61975 -19.58378 -18.84889 -17.98625 -16.92578 -16.61608 -16.40855 -15.84796 -15.71840 -14.97262 -14.91641 -14.54272 -14.34112 -14.02531 -13.91375 -13.37272 -13.27716 -13.15871 -12.52700 -12.38197 -12.18573 -12.05281 -11.89022 -11.36769 -10.94567 -10.86832 -10.67680 -10.37668 -10.18644 -9.94379 -9.56890 -9.48318 -9.23446 -8.44600 -7.82641 -6.09675 -4.12945 0.50424 0.82423 2.51097 2.64257 2.79414 2.93670 3.27296 3.32445 3.34327 3.57946 3.69308 3.86026 4.10333 4.38334 4.62658 4.84455 5.07521 5.18419 5.21118 5.26539 5.39268 5.47585 5.54050 5.60263 5.92898 5.99335 6.37028 6.44393 6.67222 6.83057 6.96521 7.02143 7.44260 7.52849 7.64390 7.72838 7.88181 8.29147 8.93192 9.51863 11.01507 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.003247 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.548922 B = 8622.105765 C = 9611.602985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.297 6.297 3 C 0.420 3.580 4 N -0.571 5.571 5 C 0.457 3.543 6 N -0.691 5.691 7 C 0.122 3.878 8 C -0.125 4.125 9 C 0.027 3.973 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.061 4.061 19 F -0.130 7.130 20 C 0.014 3.986 21 C -0.159 4.159 22 C 0.280 3.720 23 N -0.430 5.430 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.417 0.583 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.216 -7.607 -0.015 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.201 6.201 3 C 0.235 3.765 4 N -0.306 5.306 5 C 0.213 3.787 6 N -0.318 5.318 7 C -0.001 4.001 8 C -0.163 4.163 9 C -0.011 4.011 10 C -0.563 4.563 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.088 4.088 19 F -0.109 7.109 20 C -0.013 4.013 21 C -0.169 4.169 22 C -0.035 4.035 23 N -0.107 5.107 24 H 0.118 0.882 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.255 0.745 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.930 -9.408 -0.009 17.647 hybrid contribution -0.026 2.046 -0.003 2.046 sum 14.904 -7.362 -0.012 16.623 Atomic orbital electron populations 1.23057 0.75705 1.03598 1.03603 1.86268 1.24146 1.23631 1.86097 1.19308 0.87101 0.84367 0.85732 1.66959 1.38271 0.96454 1.28899 1.18141 0.86261 0.87008 0.87303 1.45212 1.07515 1.05020 1.74063 1.21803 0.75688 1.00198 1.02380 1.21940 1.00176 0.92985 1.01160 1.18999 0.86970 0.97475 0.97627 1.21156 0.91454 0.92458 1.51256 0.92675 1.25013 0.97480 0.96702 0.95143 1.69940 1.04896 1.28073 1.50375 0.86639 0.78179 0.84429 0.78657 1.20208 1.21235 1.20203 1.17377 0.89757 0.81355 1.20317 1.91492 1.85081 1.39079 1.95284 1.21052 1.00890 0.88300 0.91067 1.15201 0.88246 0.88500 1.24953 1.24875 0.93139 0.92421 0.93034 1.81219 1.08881 1.09812 1.10813 0.88183 0.91345 0.91353 0.74544 0.91222 0.91228 0.92552 0.92557 0.96256 0.96254 0.92813 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.30 -3.38 9.91 -18.22 -0.18 -3.56 16 3 C 0.42 4.88 7.50 -16.64 -0.12 4.76 16 4 N -0.57 -7.07 8.38 -12.14 -0.10 -7.17 16 5 C 0.46 5.44 7.48 -155.11 -1.16 4.28 16 6 N -0.69 -8.48 5.69 -60.37 -0.34 -8.83 16 7 C 0.12 1.78 5.67 -4.04 -0.02 1.76 16 8 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.50 16 10 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 11 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 14 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.06 -0.63 7.33 -39.18 -0.29 -0.92 16 19 F -0.13 -1.35 16.61 2.25 0.04 -1.32 16 20 C 0.01 0.13 9.87 -38.87 -0.38 -0.26 16 21 C -0.16 -1.67 5.77 -106.41 -0.61 -2.29 16 22 C 0.28 3.33 14.90 -22.48 -0.33 2.99 16 23 N -0.43 -5.93 18.54 41.84 0.78 -5.16 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 27 H 0.42 4.54 7.91 -40.82 -0.32 4.21 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -29.83 322.20 -5.90 -35.73 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.09 Total: -2.33 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.57 Total: -2.99 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 1.07 Total: -46.20 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.18 Total: -3.56 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.83 -5.90 -35.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.104 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds