Wall clock time and date at job start Tue Mar 31 2020 01:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35510 * 117.00018 * 2 1 4 4 N 1.32176 * 119.73825 * 0.26790 * 3 2 1 5 5 C 1.32485 * 121.73309 * 180.25042 * 4 3 2 6 6 N 1.38675 * 119.50031 * 179.75357 * 5 4 3 7 7 C 1.46500 * 120.00167 * 359.72669 * 6 5 4 8 8 C 1.53006 * 109.46998 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46626 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46957 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00340 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99773 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00296 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47086 * 59.99480 * 14 12 10 16 16 H 1.48494 * 109.47288 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46879 * 299.99424 * 14 12 10 18 18 C 1.39554 * 120.99795 * 359.47567 * 5 4 3 19 19 F 1.35093 * 120.32304 * 180.23086 * 18 5 4 20 20 C 1.37998 * 119.35976 * 0.25933 * 18 5 4 21 21 C 1.40260 * 119.73817 * 180.02562 * 3 2 1 22 22 C 1.43199 * 120.51241 * 0.03510 * 21 3 2 23 23 N 3.53383 * 165.69613 * 180.09912 * 2 1 3 24 24 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47447 * 300.00542 * 1 2 3 26 26 H 1.09000 * 109.46724 * 60.00559 * 1 2 3 27 27 H 0.97010 * 119.99923 * 179.72978 * 6 5 4 28 28 H 1.09000 * 109.47175 * 60.00057 * 7 6 5 29 29 H 1.09001 * 109.47297 * 299.99565 * 7 6 5 30 30 H 1.08993 * 109.46955 * 300.00226 * 8 7 6 31 31 H 1.09000 * 109.47050 * 60.00054 * 8 7 6 32 32 H 1.08993 * 109.47839 * 299.99931 * 9 8 7 33 33 H 1.09000 * 109.47160 * 60.00369 * 9 8 7 34 34 H 0.97000 * 120.00540 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.79372 * 179.97438 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3193 2.3126 0.0054 5 6 1.8793 3.5133 0.0007 6 7 1.0741 4.6423 0.0015 7 6 -0.3842 4.5021 0.0014 8 6 -1.0300 5.8892 0.0030 9 6 -2.5529 5.7426 0.0023 10 6 -3.1890 7.1089 0.0033 11 1 -2.5690 7.9932 0.0039 12 6 -4.5625 7.2299 0.0034 13 7 -5.3174 6.1531 0.0022 14 14 -5.3509 8.9234 0.0039 15 1 -4.9252 9.6679 -1.2084 16 1 -6.8290 8.7812 0.0033 17 1 -4.9252 9.6672 1.2166 18 6 3.2672 3.6590 0.0007 19 9 3.8237 4.8900 0.0006 20 6 4.0656 2.5335 0.0003 21 6 3.4452 1.2744 -0.0005 22 6 4.2303 0.0769 -0.0019 23 7 4.8533 -0.8731 -0.0015 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.4764 5.5251 0.0020 28 1 -0.6967 3.9552 0.8910 29 1 -0.6968 3.9565 -0.8890 30 1 -0.7174 6.4344 0.8935 31 1 -0.7176 6.4364 -0.8864 32 1 -2.8652 5.1976 -0.8884 33 1 -2.8657 5.1952 0.8915 34 1 -6.2837 6.2381 0.0019 35 1 5.1422 2.6194 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157642248.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:11 Heat of formation + Delta-G solvation = -44.270486 kcal Electronic energy + Delta-G solvation = -20395.208155 eV Core-core repulsion = 16921.357974 eV Total energy + Delta-G solvation = -3473.850181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.82944 -41.86717 -39.39165 -37.98169 -37.16310 -35.48348 -33.73890 -32.94303 -30.94681 -28.75110 -27.81344 -25.54234 -24.64880 -23.69036 -22.13376 -20.47036 -19.78588 -18.94703 -18.37013 -17.84381 -17.48908 -16.71423 -16.57416 -16.51192 -16.18058 -15.91548 -15.32461 -14.84939 -14.82226 -14.42678 -14.29709 -14.25455 -14.09795 -13.71119 -13.50035 -13.40625 -12.78692 -12.77822 -12.54178 -12.37404 -12.31439 -11.65125 -11.50573 -11.21100 -11.16792 -11.01029 -10.52755 -10.43606 -8.75580 -8.18505 -6.28851 -0.37669 0.00887 1.42992 1.44708 1.52510 1.59080 1.76355 1.86667 2.02617 2.42996 2.68591 2.77959 3.01253 3.15726 3.20395 3.85328 4.01192 4.17236 4.26968 4.32012 4.44765 4.45748 4.58277 4.62757 4.81584 4.99149 4.99445 5.17331 5.21807 5.52009 5.63164 5.74715 5.86744 6.04144 6.07787 6.25772 6.50793 6.82487 6.88485 7.40557 8.92943 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.003247 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.548922 B = 8622.105765 C = 9611.602985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.411 3.589 4 N -0.586 5.586 5 C 0.447 3.553 6 N -0.691 5.691 7 C 0.141 3.859 8 C -0.108 4.108 9 C 0.028 3.972 10 C -0.543 4.543 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.961 3.039 15 H -0.267 1.267 16 H -0.286 1.286 17 H -0.267 1.267 18 C -0.057 4.057 19 F -0.128 7.128 20 C 0.036 3.964 21 C -0.155 4.155 22 C 0.300 3.700 23 N -0.464 5.464 24 H 0.124 0.876 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.424 0.576 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.063 0.937 32 H -0.004 1.004 33 H -0.004 1.004 34 H 0.263 0.737 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.665 -6.667 -0.016 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.212 6.212 3 C 0.227 3.773 4 N -0.321 5.321 5 C 0.204 3.796 6 N -0.320 5.320 7 C 0.018 3.982 8 C -0.146 4.146 9 C -0.010 4.010 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.786 3.214 15 H -0.192 1.192 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.083 4.083 19 F -0.107 7.107 20 C 0.009 3.991 21 C -0.166 4.166 22 C -0.015 4.015 23 N -0.141 5.141 24 H 0.142 0.858 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.264 0.736 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.072 0.928 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 16.414 -8.467 -0.010 18.469 hybrid contribution -0.455 1.698 -0.003 1.757 sum 15.959 -6.769 -0.013 17.335 Atomic orbital electron populations 1.23186 0.74769 1.05066 1.03037 1.86266 1.25135 1.23691 1.86073 1.19467 0.87565 0.84284 0.85972 1.66917 1.38964 0.96869 1.29350 1.18279 0.86945 0.86632 0.87723 1.44908 1.06297 1.05722 1.75091 1.21323 0.77242 0.97911 1.01743 1.21639 0.96172 0.94987 1.01819 1.18889 0.91063 0.95670 0.95343 1.21670 0.92035 0.93918 1.50490 0.91949 1.25928 0.98318 1.00613 0.94867 1.70073 1.05124 1.30382 1.51644 0.85563 0.77011 0.79704 0.79158 1.19228 1.21164 1.19218 1.17309 0.89022 0.81827 1.20171 1.91506 1.84908 1.39007 1.95277 1.21329 1.02342 0.86811 0.88657 1.15247 0.87667 0.88694 1.24951 1.24928 0.92377 0.92129 0.92030 1.81244 1.10088 1.10718 1.12075 0.85777 0.91894 0.91890 0.73646 0.91964 0.91960 0.91827 0.91831 0.98560 0.98561 0.92819 0.78888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.38 113.37 1.18 1.78 16 2 O -0.31 -6.76 9.91 -88.12 -0.87 -7.64 16 3 C 0.41 9.11 7.50 85.13 0.64 9.75 16 4 N -0.59 -14.00 8.38 -305.32 -2.56 -16.56 16 5 C 0.45 9.98 7.48 133.25 1.00 10.98 16 6 N -0.69 -16.10 5.69 -344.91 -1.96 -18.07 16 7 C 0.14 4.10 5.67 86.38 0.49 4.59 16 8 C -0.11 -3.78 5.27 30.60 0.16 -3.62 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.54 -29.12 9.11 25.60 0.23 -28.89 16 11 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 14 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 16 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 C -0.06 -1.03 7.33 22.53 0.17 -0.86 16 19 F -0.13 -2.31 16.61 44.97 0.75 -1.56 16 20 C 0.04 0.52 9.87 22.73 0.22 0.75 16 21 C -0.16 -2.96 5.77 -21.02 -0.12 -3.08 16 22 C 0.30 6.62 14.90 88.33 1.32 7.94 16 23 N -0.46 -12.24 18.54 19.00 0.35 -11.88 16 24 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.18 8.10 -2.38 -0.02 1.17 16 26 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 27 H 0.42 8.50 7.91 -92.70 -0.73 7.77 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -64.03 322.20 4.31 -59.73 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 0.40 Total: 4.52 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.89 Total: 1.34 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -3.88 Total: -100.98 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.87 Total: -7.64 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.75 Total: -1.56 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -64.03 4.31 -59.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157642248.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.458 kcal (2) G-P(sol) polarization free energy of solvation -64.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds