Wall clock time and date at job start Tue Mar 31 2020 00:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.08998 * 109.46818 * 305.67817 * 3 2 1 5 5 C 1.50697 * 109.47296 * 185.67873 * 3 2 1 6 6 H 1.08000 * 119.99679 * 335.06644 * 5 3 2 7 7 C 1.37875 * 120.00145 * 155.07130 * 5 3 2 8 8 N 1.31509 * 120.00064 * 5.59305 * 7 5 3 9 9 Si 1.86800 * 119.99855 * 185.59757 * 7 5 3 10 10 H 1.48496 * 109.46961 * 269.99619 * 9 7 5 11 11 H 1.48494 * 109.47459 * 29.99682 * 9 7 5 12 12 H 1.48500 * 109.46960 * 149.99775 * 9 7 5 13 13 N 1.46496 * 109.47214 * 65.67504 * 3 2 1 14 14 C 1.38685 * 120.00265 * 275.00582 * 13 3 2 15 15 N 1.32521 * 119.49939 * 359.72570 * 14 13 3 16 16 C 1.32149 * 121.73293 * 179.71270 * 15 14 13 17 17 O 1.35507 * 119.73710 * 180.30652 * 16 15 14 18 18 C 1.42895 * 117.00235 * 0.25305 * 17 16 15 19 19 C 1.40297 * 120.52028 * 0.56507 * 16 15 14 20 20 C 1.43200 * 120.51355 * 179.74689 * 19 16 15 21 21 N 7.87310 * 41.20581 * 20.19968 * 2 1 3 22 22 C 1.40326 * 118.97360 * 359.72034 * 19 16 15 23 23 C 1.38041 * 118.41049 * 0.02562 * 22 19 16 24 24 F 1.35102 * 120.31684 * 180.02562 * 23 22 19 25 25 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 26 26 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 27 27 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 29 29 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 30 30 H 0.97001 * 120.00312 * 355.08142 * 8 7 5 31 31 H 0.97001 * 119.99773 * 94.99946 * 13 3 2 32 32 H 1.09003 * 109.47008 * 59.99692 * 18 17 16 33 33 H 1.09003 * 109.47322 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.47243 * 299.99898 * 18 17 16 35 35 H 1.08003 * 120.79683 * 179.97438 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5404 1.4449 -0.1406 6 1 4.1135 0.5850 0.1734 7 6 4.1815 2.5447 -0.6700 8 7 3.4979 3.6327 -0.9499 9 14 6.0211 2.4893 -0.9897 10 1 6.7477 2.9573 0.2179 11 1 6.4275 1.0957 -1.3027 12 1 6.3507 3.3708 -2.1384 13 7 1.6664 2.0926 1.2586 14 6 0.4152 2.6754 1.3933 15 7 -0.4327 2.6433 0.3754 16 6 -1.6377 3.1796 0.4573 17 8 -2.4745 3.1181 -0.6067 18 6 -1.9894 2.4556 -1.7762 19 6 -2.0553 3.8169 1.6353 20 6 -3.3591 4.4028 1.7221 21 7 -4.3933 4.8675 1.7909 22 6 -1.1758 3.8709 2.7275 23 6 0.0705 3.2920 2.5963 24 9 0.9474 3.3211 3.6236 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5330 3.6380 -0.8515 31 1 2.2942 2.1153 1.9977 32 1 -1.7475 1.4209 -1.5336 33 1 -2.7563 2.4772 -2.5505 34 1 -1.0945 2.9631 -2.1364 35 1 -1.4667 4.3545 3.6483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:25 Heat of formation + Delta-G solvation = -19.959258 kcal Electronic energy + Delta-G solvation = -22055.443315 eV Core-core repulsion = 18582.647348 eV Total energy + Delta-G solvation = -3472.795967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.48218 -40.52177 -38.08994 -36.72293 -35.81500 -32.97526 -32.01418 -31.66074 -29.48182 -27.07630 -26.58144 -23.70813 -23.18251 -22.76723 -20.35084 -19.08606 -18.59981 -17.63140 -16.96713 -16.33526 -16.14609 -15.34939 -15.25392 -14.66240 -14.20016 -13.97391 -13.84076 -13.61841 -13.48207 -13.26541 -12.90617 -12.71613 -12.58989 -12.35297 -12.07391 -11.75576 -11.36380 -11.22948 -10.92738 -10.82080 -10.47828 -10.29886 -10.23101 -9.69774 -9.48932 -8.96408 -8.84051 -8.66332 -7.09687 -6.73476 -4.56580 1.07653 1.37293 2.92369 3.08720 3.24953 3.26867 3.29192 3.45391 3.67452 4.07436 4.18285 4.25779 4.46028 4.67504 5.04549 5.25127 5.37605 5.38744 5.44710 5.69868 5.74435 5.81758 5.91185 5.92533 6.03003 6.41972 6.50735 6.62754 6.71259 6.80436 7.04931 7.21418 7.47823 7.68244 7.85848 7.99697 8.08938 8.45372 8.57101 9.23609 10.63962 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019842 B = 0.005835 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.844277 B = 4797.510530 C = 5230.653069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.240 3.760 4 H 0.063 0.937 5 C -0.610 4.610 6 H 0.059 0.941 7 C 0.034 3.966 8 N -0.882 5.882 9 Si 1.071 2.929 10 H -0.285 1.285 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.657 5.657 14 C 0.453 3.547 15 N -0.567 5.567 16 C 0.418 3.582 17 O -0.301 6.301 18 C 0.033 3.967 19 C -0.183 4.183 20 C 0.289 3.711 21 N -0.450 5.450 22 C 0.011 3.989 23 C -0.075 4.075 24 F -0.136 7.136 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.277 0.723 31 H 0.403 0.597 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 -3.449 2.506 6.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.141 3.859 4 H 0.081 0.919 5 C -0.648 4.648 6 H 0.077 0.923 7 C -0.176 4.176 8 N -0.514 5.514 9 Si 0.898 3.102 10 H -0.211 1.211 11 H -0.211 1.211 12 H -0.207 1.207 13 N -0.280 5.280 14 C 0.207 3.793 15 N -0.302 5.302 16 C 0.231 3.769 17 O -0.206 6.206 18 C -0.062 4.062 19 C -0.195 4.195 20 C -0.025 4.025 21 N -0.127 5.127 22 C -0.017 4.017 23 C -0.102 4.102 24 F -0.115 7.115 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.241 0.759 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.668 -2.276 1.104 6.207 hybrid contribution -0.513 -0.791 1.601 1.858 sum -6.181 -3.067 2.705 7.412 Atomic orbital electron populations 1.21980 0.97217 0.98881 1.01941 1.21818 0.94150 0.98769 1.00865 1.19191 0.95231 0.88842 0.82608 0.91904 1.22170 0.91085 1.05308 1.46267 0.92253 1.26060 1.07292 0.91743 0.92513 1.70752 1.10107 1.27311 1.43279 0.83500 0.73572 0.75837 0.77251 1.21147 1.21059 1.20728 1.47550 1.08913 1.52382 1.19139 1.18607 0.87746 0.86669 0.86300 1.67211 1.03434 1.29358 1.30246 1.19355 0.85935 0.86298 0.85319 1.86225 1.39587 1.73009 1.21777 1.23095 1.00918 0.97928 0.84236 1.15078 0.91726 1.17389 0.95264 1.24999 0.91967 0.92359 0.93206 1.81163 1.11632 1.11771 1.08183 1.20915 0.89953 0.93356 0.97450 1.17514 0.90960 1.14358 0.87349 1.91451 1.67718 1.95788 1.56509 0.93506 0.92352 0.95052 0.91945 0.93537 0.91076 0.75867 0.91403 0.88777 0.91455 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.45 37.16 0.31 -2.03 16 2 C -0.12 -2.17 5.58 -26.73 -0.15 -2.32 16 3 C 0.24 5.11 1.80 -69.08 -0.12 4.98 16 4 H 0.06 1.48 6.32 -51.93 -0.33 1.15 16 5 C -0.61 -14.60 8.50 -34.44 -0.29 -14.89 16 6 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 7 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 8 N -0.88 -23.73 13.63 55.43 0.76 -22.97 16 9 Si 1.07 22.38 29.91 -169.99 -5.08 17.29 16 10 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.66 -12.84 5.14 -55.02 -0.28 -13.13 16 14 C 0.45 8.15 6.06 -155.08 -0.94 7.21 16 15 N -0.57 -9.88 5.22 -12.14 -0.06 -9.94 16 16 C 0.42 6.77 7.50 -16.64 -0.12 6.65 16 17 O -0.30 -4.61 9.91 -18.22 -0.18 -4.79 16 18 C 0.03 0.42 10.38 101.05 1.05 1.47 16 19 C -0.18 -2.79 5.77 -106.41 -0.61 -3.40 16 20 C 0.29 4.58 14.90 -22.47 -0.33 4.24 16 21 N -0.45 -7.74 18.54 41.84 0.78 -6.97 16 22 C 0.01 0.15 9.87 -38.87 -0.38 -0.23 16 23 C -0.07 -1.21 7.33 -39.18 -0.29 -1.50 16 24 F -0.14 -2.21 16.61 2.25 0.04 -2.17 16 25 H 0.05 0.79 5.58 -51.93 -0.29 0.50 16 26 H 0.06 0.94 5.35 -51.93 -0.28 0.66 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.28 7.51 6.78 -40.82 -0.28 7.23 16 31 H 0.40 7.83 8.03 -40.82 -0.33 7.50 16 32 H 0.07 0.86 5.75 -51.93 -0.30 0.56 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.15 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 306.24 15.07 4.61 4.61 Total: -1.00 -26.37 306.24 -4.95 -31.33 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.54 Total: 5.80 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.99 Total: 0.93 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 1.18 Total: -53.01 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.18 Total: -4.79 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.08 Total: 17.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.37 -4.95 -31.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.366 kcal (2) G-P(sol) polarization free energy of solvation -26.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds