Wall clock time and date at job start Tue Mar 31 2020 00:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.08998 * 109.46818 * 305.67817 * 3 2 1 5 5 C 1.50697 * 109.47296 * 185.67873 * 3 2 1 6 6 H 1.08000 * 119.99679 * 335.06644 * 5 3 2 7 7 C 1.37875 * 120.00145 * 155.07130 * 5 3 2 8 8 N 1.31509 * 120.00064 * 5.59305 * 7 5 3 9 9 Si 1.86800 * 119.99855 * 185.59757 * 7 5 3 10 10 H 1.48496 * 109.46961 * 269.99619 * 9 7 5 11 11 H 1.48494 * 109.47459 * 29.99682 * 9 7 5 12 12 H 1.48500 * 109.46960 * 149.99775 * 9 7 5 13 13 N 1.46496 * 109.47214 * 65.67504 * 3 2 1 14 14 C 1.38685 * 120.00265 * 275.00582 * 13 3 2 15 15 N 1.32521 * 119.49939 * 359.72570 * 14 13 3 16 16 C 1.32149 * 121.73293 * 179.71270 * 15 14 13 17 17 O 1.35507 * 119.73710 * 180.30652 * 16 15 14 18 18 C 1.42895 * 117.00235 * 0.25305 * 17 16 15 19 19 C 1.40297 * 120.52028 * 0.56507 * 16 15 14 20 20 C 1.43200 * 120.51355 * 179.74689 * 19 16 15 21 21 N 7.87310 * 41.20581 * 20.19968 * 2 1 3 22 22 C 1.40326 * 118.97360 * 359.72034 * 19 16 15 23 23 C 1.38041 * 118.41049 * 0.02562 * 22 19 16 24 24 F 1.35102 * 120.31684 * 180.02562 * 23 22 19 25 25 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 26 26 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 27 27 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 29 29 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 30 30 H 0.97001 * 120.00312 * 355.08142 * 8 7 5 31 31 H 0.97001 * 119.99773 * 94.99946 * 13 3 2 32 32 H 1.09003 * 109.47008 * 59.99692 * 18 17 16 33 33 H 1.09003 * 109.47322 * 179.97438 * 18 17 16 34 34 H 1.09004 * 109.47243 * 299.99898 * 18 17 16 35 35 H 1.08003 * 120.79683 * 179.97438 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5404 1.4449 -0.1406 6 1 4.1135 0.5850 0.1734 7 6 4.1815 2.5447 -0.6700 8 7 3.4979 3.6327 -0.9499 9 14 6.0211 2.4893 -0.9897 10 1 6.7477 2.9573 0.2179 11 1 6.4275 1.0957 -1.3027 12 1 6.3507 3.3708 -2.1384 13 7 1.6664 2.0926 1.2586 14 6 0.4152 2.6754 1.3933 15 7 -0.4327 2.6433 0.3754 16 6 -1.6377 3.1796 0.4573 17 8 -2.4745 3.1181 -0.6067 18 6 -1.9894 2.4556 -1.7762 19 6 -2.0553 3.8169 1.6353 20 6 -3.3591 4.4028 1.7221 21 7 -4.3933 4.8675 1.7909 22 6 -1.1758 3.8709 2.7275 23 6 0.0705 3.2920 2.5963 24 9 0.9474 3.3211 3.6236 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5330 3.6380 -0.8515 31 1 2.2942 2.1153 1.9977 32 1 -1.7475 1.4209 -1.5336 33 1 -2.7563 2.4772 -2.5505 34 1 -1.0945 2.9631 -2.1364 35 1 -1.4667 4.3545 3.6483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:23 Heat of formation + Delta-G solvation = -34.937586 kcal Electronic energy + Delta-G solvation = -22056.092824 eV Core-core repulsion = 18582.647348 eV Total energy + Delta-G solvation = -3473.445476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 5.34 seconds Orbital eigenvalues (eV) -49.76554 -41.82329 -39.40389 -38.11231 -37.23872 -34.64302 -33.51416 -33.01708 -30.79719 -28.49450 -27.94067 -25.32635 -24.54077 -24.13748 -21.88624 -20.37734 -19.98040 -19.13440 -18.46215 -17.73412 -17.42200 -16.64319 -16.51896 -16.12110 -15.65248 -15.44921 -15.34582 -14.93139 -14.78257 -14.70134 -14.33725 -14.06597 -13.99479 -13.70879 -13.37920 -12.99434 -12.80337 -12.69586 -12.55386 -12.21377 -11.97061 -11.84723 -11.65207 -11.05377 -10.88386 -10.68854 -10.62702 -10.10580 -8.70779 -8.48589 -6.50397 -0.22815 0.11528 1.57906 1.61155 1.64393 1.81564 1.88033 1.95566 2.27291 2.54050 2.77730 2.86287 3.16720 3.18677 3.48833 3.95328 4.11866 4.27109 4.38539 4.39717 4.45263 4.48233 4.61186 4.67739 4.77647 4.96201 5.14066 5.22278 5.24896 5.36055 5.57159 5.77499 5.93138 6.13661 6.27858 6.43242 6.54870 6.58296 7.08404 7.36622 8.69480 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019842 B = 0.005835 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.844277 B = 4797.510530 C = 5230.653069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C 0.250 3.750 4 H 0.036 0.964 5 C -0.617 4.617 6 H 0.056 0.944 7 C -0.009 4.009 8 N -0.915 5.915 9 Si 1.113 2.887 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.441 3.559 15 N -0.576 5.576 16 C 0.410 3.590 17 O -0.306 6.306 18 C 0.032 3.968 19 C -0.174 4.174 20 C 0.304 3.696 21 N -0.468 5.468 22 C 0.034 3.966 23 C -0.081 4.081 24 F -0.136 7.136 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.265 0.735 31 H 0.403 0.597 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.051 0.949 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -3.815 3.226 8.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.151 4.151 3 C 0.150 3.850 4 H 0.054 0.946 5 C -0.655 4.655 6 H 0.074 0.926 7 C -0.212 4.212 8 N -0.550 5.550 9 Si 0.936 3.064 10 H -0.203 1.203 11 H -0.193 1.193 12 H -0.214 1.214 13 N -0.294 5.294 14 C 0.197 3.803 15 N -0.311 5.311 16 C 0.224 3.776 17 O -0.211 6.211 18 C -0.062 4.062 19 C -0.185 4.185 20 C -0.010 4.010 21 N -0.146 5.146 22 C 0.007 3.993 23 C -0.108 4.108 24 F -0.115 7.115 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.070 0.930 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.520 -2.651 1.834 7.273 hybrid contribution -0.410 -0.687 1.388 1.603 sum -6.930 -3.338 3.222 8.340 Atomic orbital electron populations 1.21855 0.95362 1.00072 1.01612 1.21738 0.95771 0.96941 1.00686 1.18895 0.93722 0.90001 0.82431 0.94642 1.22448 0.92687 1.04806 1.45591 0.92584 1.27182 1.10370 0.91535 0.92141 1.70864 1.09451 1.28517 1.46199 0.82961 0.69935 0.76479 0.77067 1.20251 1.19339 1.21449 1.46826 1.10013 1.54127 1.18432 1.18672 0.87273 0.87036 0.87310 1.67161 1.03869 1.29693 1.30388 1.19546 0.85681 0.86372 0.86042 1.86236 1.39514 1.73211 1.22140 1.23258 1.01526 0.97379 0.84054 1.15149 0.91559 1.16567 0.95211 1.24899 0.91696 0.91809 0.92554 1.81193 1.12185 1.12371 1.08863 1.21217 0.88354 0.91553 0.98219 1.17522 0.91736 1.14760 0.86779 1.91451 1.67908 1.95847 1.56335 0.94132 0.92366 0.93003 0.92280 0.93422 0.92446 0.75933 0.91382 0.85477 0.93038 0.79442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.45 71.98 0.61 -3.57 16 2 C -0.11 -4.14 5.58 30.59 0.17 -3.97 16 3 C 0.25 10.80 1.80 44.25 0.08 10.88 16 4 H 0.04 1.73 6.32 -2.39 -0.02 1.72 16 5 C -0.62 -29.92 8.50 25.60 0.22 -29.70 16 6 H 0.06 2.69 7.81 -2.91 -0.02 2.67 16 7 C -0.01 -0.44 5.45 84.65 0.46 0.02 16 8 N -0.92 -50.49 13.63 21.45 0.29 -50.20 16 9 Si 1.11 45.26 29.91 68.60 2.05 47.31 16 10 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 12 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.67 -26.45 5.14 -327.97 -1.69 -28.13 16 14 C 0.44 15.72 6.06 133.23 0.81 16.53 16 15 N -0.58 -19.83 5.22 -305.33 -1.59 -21.43 16 16 C 0.41 12.78 7.50 85.15 0.64 13.42 16 17 O -0.31 -8.95 9.91 -88.09 -0.87 -9.83 16 18 C 0.03 0.78 10.38 113.37 1.18 1.96 16 19 C -0.17 -4.90 5.77 -21.02 -0.12 -5.02 16 20 C 0.30 8.92 14.90 88.33 1.32 10.23 16 21 N -0.47 -15.12 18.54 19.00 0.35 -14.77 16 22 C 0.03 0.85 9.87 22.73 0.22 1.07 16 23 C -0.08 -2.50 7.33 22.53 0.17 -2.33 16 24 F -0.14 -4.25 16.61 44.97 0.75 -3.50 16 25 H 0.04 1.33 5.58 -2.39 -0.01 1.31 16 26 H 0.06 1.83 5.35 -2.38 -0.01 1.82 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.26 14.85 6.78 -92.71 -0.63 14.22 16 31 H 0.40 15.87 8.03 -92.71 -0.74 15.13 16 32 H 0.07 1.66 5.75 -2.39 -0.01 1.65 16 33 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 1.42 8.10 -2.39 -0.02 1.41 16 35 H 0.19 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -56.63 306.24 5.59 -51.04 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.55 Total: 19.98 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.75 Total: 9.52 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -2.64 Total: -114.53 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.87 Total: -9.83 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.75 Total: -3.50 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.05 Total: 47.31 kcal Total: -56.63 5.59 -51.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.104 kcal (2) G-P(sol) polarization free energy of solvation -56.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.34 seconds