Wall clock time and date at job start Tue Mar 31 2020 00:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47290 * 2 1 4 4 N 1.46497 * 109.47241 * 120.00336 * 2 1 3 5 5 C 1.38752 * 120.00487 * 63.24010 * 4 2 1 6 6 C 1.38677 * 120.27936 * 1.12956 * 5 4 2 7 7 C 1.38315 * 120.01428 * 179.97438 * 6 5 4 8 8 Cl 1.73598 * 119.70117 * 179.74460 * 7 6 5 9 9 C 1.39053 * 120.59544 * 0.02562 * 7 6 5 10 10 C 1.36412 * 120.57740 * 0.02562 * 9 7 6 11 11 C 1.40750 * 119.96204 * 359.97438 * 10 9 7 12 12 C 1.41017 * 120.29218 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00305 * 150.17762 * 12 11 10 14 14 C 1.39918 * 119.99727 * 330.17654 * 12 11 10 15 15 N 1.30893 * 119.99913 * 344.84475 * 14 12 11 16 16 Si 1.86801 * 119.99826 * 164.84772 * 14 12 11 17 17 H 1.48504 * 109.46899 * 90.00161 * 16 14 12 18 18 H 1.48497 * 109.46657 * 209.99658 * 16 14 12 19 19 H 1.48495 * 109.47303 * 329.99980 * 16 14 12 20 20 C 1.52997 * 109.47338 * 240.00144 * 2 1 3 21 21 C 1.52997 * 117.50298 * 123.61965 * 20 2 1 22 22 C 1.52998 * 60.00073 * 252.51053 * 21 20 2 23 23 H 1.09004 * 109.47039 * 306.31161 * 1 2 3 24 24 H 1.09003 * 109.46783 * 66.31181 * 1 2 3 25 25 H 1.08999 * 109.47021 * 186.31578 * 1 2 3 26 26 H 1.08997 * 109.46708 * 177.64697 * 3 2 1 27 27 H 1.08996 * 109.46999 * 297.64703 * 3 2 1 28 28 H 1.09002 * 109.46743 * 57.64800 * 3 2 1 29 29 H 0.97010 * 119.99659 * 243.24654 * 4 2 1 30 30 H 1.08000 * 119.99492 * 0.02611 * 6 5 4 31 31 H 1.07994 * 119.71666 * 179.97438 * 9 7 6 32 32 H 1.08003 * 120.02072 * 180.02562 * 10 9 7 33 33 H 0.96999 * 119.99900 * 180.02562 * 15 14 12 34 34 H 1.09005 * 115.55263 * 269.33469 * 20 2 1 35 35 H 1.09006 * 117.49706 * 0.02562 * 21 20 2 36 36 H 1.08999 * 117.50189 * 145.02065 * 21 20 2 37 37 H 1.08997 * 117.50000 * 252.49986 * 22 21 20 38 38 H 1.09003 * 117.49221 * 107.48769 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7396 -2.0371 1.3823 6 6 1.0192 -2.7404 0.4286 7 6 0.7448 -4.0825 0.6196 8 17 -0.1634 -4.9535 -0.5764 9 6 1.1850 -4.7391 1.7636 10 6 1.8946 -4.0706 2.7177 11 6 2.1872 -2.7043 2.5478 12 6 2.9208 -2.0066 3.5294 13 1 3.5467 -1.1735 3.2454 14 6 2.8377 -2.3935 4.8715 15 7 1.8759 -3.1895 5.2648 16 14 4.0994 -1.7741 6.1019 17 1 3.6250 -0.4995 6.6981 18 1 4.2820 -2.7846 7.1746 19 1 5.3939 -1.5460 5.4111 20 6 2.0400 -0.7212 -1.2492 21 6 2.9840 0.0497 -2.1742 22 6 1.5416 -0.2213 -2.6066 23 1 -0.3633 0.6086 0.8281 24 1 -0.3633 0.4129 -0.9411 25 1 -0.3633 -1.0214 0.1131 26 1 3.1292 1.4427 0.0422 27 1 1.7116 1.9440 -0.9103 28 1 1.6427 1.9684 0.8682 29 1 2.5366 -0.2066 1.8580 30 1 0.6729 -2.2402 -0.4638 31 1 0.9624 -5.7872 1.8984 32 1 2.2324 -4.5895 3.6026 33 1 1.8180 -3.4574 6.1952 34 1 2.2076 -1.7926 -1.1382 35 1 3.2420 1.0706 -1.8925 36 1 3.7729 -0.5143 -2.6717 37 1 1.3816 -0.9634 -3.3886 38 1 0.8504 0.6216 -2.6096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162523624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:08 Heat of formation + Delta-G solvation = 29.114348 kcal Electronic energy + Delta-G solvation = -20029.705084 eV Core-core repulsion = 17090.913826 eV Total energy + Delta-G solvation = -2938.791257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 8.11 seconds Orbital eigenvalues (eV) -40.84070 -38.91346 -37.07723 -35.69727 -35.16852 -32.41984 -31.33327 -29.32243 -28.13458 -26.75631 -24.70443 -22.98457 -22.59616 -22.15980 -19.84707 -18.93405 -18.00654 -17.49415 -16.66920 -16.07729 -16.03371 -15.31997 -14.92585 -14.70407 -14.51563 -14.06250 -13.56934 -13.48888 -13.32355 -13.16513 -13.09147 -12.87102 -12.78484 -12.47472 -12.33242 -12.13737 -11.94164 -11.78935 -11.66433 -11.49632 -11.35047 -10.99417 -10.91634 -10.70510 -10.39052 -9.13628 -8.58521 -8.04173 -6.07557 0.89200 1.26085 1.41450 1.48138 1.54506 1.71997 2.24777 2.77533 2.84832 3.14765 3.69714 3.82787 4.07578 4.20051 4.23729 4.39381 4.48310 4.60334 4.63687 4.79623 4.79894 4.89271 4.97147 5.04048 5.12199 5.14581 5.18410 5.29376 5.35064 5.36358 5.42286 5.51483 5.57364 5.60902 5.90557 6.08692 6.24321 6.50304 6.86964 6.98075 7.20426 7.34298 8.45621 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.007405 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.709286 B = 3780.108089 C = 5396.005350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.209 3.791 3 C -0.147 4.147 4 N -0.732 5.732 5 C 0.139 3.861 6 C -0.178 4.178 7 C -0.104 4.104 8 Cl -0.109 7.109 9 C -0.145 4.145 10 C -0.151 4.151 11 C 0.039 3.961 12 C -0.485 4.485 13 H 0.078 0.922 14 C 0.035 3.965 15 N -0.836 5.836 16 Si 0.974 3.026 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.187 4.187 21 C -0.176 4.176 22 C -0.163 4.163 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.395 0.605 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.283 0.717 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 7.864 -9.420 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.123 3.877 3 C -0.204 4.204 4 N -0.363 5.363 5 C 0.036 3.964 6 C -0.202 4.202 7 C -0.132 4.132 8 Cl -0.081 7.081 9 C -0.166 4.166 10 C -0.173 4.173 11 C 0.034 3.966 12 C -0.516 4.516 13 H 0.096 0.904 14 C -0.178 4.178 15 N -0.463 5.463 16 Si 0.796 3.204 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.206 4.206 21 C -0.213 4.213 22 C -0.200 4.200 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.230 0.770 30 H 0.156 0.844 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.186 7.751 -9.476 12.244 hybrid contribution 0.424 -0.388 1.136 1.273 sum 0.611 7.364 -8.341 11.143 Atomic orbital electron populations 1.22389 0.95698 1.02112 1.02163 1.19659 0.92911 0.91913 0.83253 1.22086 1.01672 0.93288 1.03387 1.44254 1.61552 1.06480 1.24038 1.17812 0.98132 0.85246 0.95166 1.20500 1.06341 0.92504 1.00847 1.20197 1.06930 0.93141 0.92935 1.98217 1.74659 1.77341 1.57861 1.20263 1.02979 0.98951 0.94392 1.20570 1.03859 0.94192 0.98633 1.17621 0.94778 0.92037 0.92137 1.19356 1.25198 1.15255 0.91773 0.90369 1.26566 0.96249 0.94027 1.00933 1.69905 1.28303 1.29467 1.18672 0.85319 0.79086 0.78597 0.77386 1.19003 1.19987 1.18348 1.22893 1.06333 0.99725 0.91693 1.23179 0.93279 1.02017 1.02778 1.23008 0.97368 1.03527 0.96102 0.93116 0.90022 0.93325 0.91648 0.89128 0.92069 0.76967 0.84449 0.87988 0.88212 0.90695 0.89262 0.86902 0.89442 0.88803 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.82 8.21 71.98 0.59 -4.22 16 2 C 0.21 6.12 0.92 3.61 0.00 6.13 16 3 C -0.15 -3.27 7.17 71.98 0.52 -2.76 16 4 N -0.73 -27.72 5.16 -298.11 -1.54 -29.26 16 5 C 0.14 6.30 6.20 38.97 0.24 6.55 16 6 C -0.18 -7.68 6.21 22.39 0.14 -7.54 16 7 C -0.10 -4.66 6.33 22.48 0.14 -4.51 16 8 Cl -0.11 -4.12 28.94 -2.72 -0.08 -4.20 16 9 C -0.15 -6.99 9.74 22.04 0.21 -6.77 16 10 C -0.15 -7.95 8.60 22.46 0.19 -7.76 16 11 C 0.04 2.01 5.53 -21.16 -0.12 1.90 16 12 C -0.49 -24.63 8.41 23.36 0.20 -24.43 16 13 H 0.08 3.73 6.83 -2.91 -0.02 3.71 16 14 C 0.04 1.75 5.15 85.24 0.44 2.19 16 15 N -0.84 -43.75 11.16 21.83 0.24 -43.50 16 16 Si 0.97 37.79 29.59 68.60 2.03 39.82 16 17 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 18 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 20 C -0.19 -5.32 4.05 -10.80 -0.04 -5.36 16 21 C -0.18 -3.92 9.51 30.59 0.29 -3.63 16 22 C -0.16 -3.50 9.31 30.59 0.28 -3.21 16 23 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.08 1.88 6.77 -2.39 -0.02 1.86 16 25 H 0.05 1.68 5.17 -2.39 -0.01 1.67 16 26 H 0.06 1.43 7.39 -2.39 -0.02 1.41 16 27 H 0.09 1.56 7.00 -2.39 -0.02 1.55 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.39 15.05 6.77 -92.70 -0.63 14.42 16 30 H 0.14 5.35 3.95 -2.91 -0.01 5.34 16 31 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 32 H 0.10 5.52 6.46 -2.91 -0.02 5.50 16 33 H 0.28 13.61 8.30 -92.71 -0.77 12.84 16 34 H 0.09 3.17 5.52 -2.38 -0.01 3.16 16 35 H 0.11 2.14 5.83 -2.38 -0.01 2.12 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.11 1.96 7.03 -2.39 -0.02 1.94 16 Total: -1.00 -56.15 309.13 4.21 -51.94 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.47 Total: 38.65 kcal Atomic # 6 Polarization: -56.53 SS G_CDS: 3.09 Total: -53.44 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.29 Total: -72.76 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 17 Polarization: -4.12 SS G_CDS: -0.08 Total: -4.20 kcal Total: -56.15 4.21 -51.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162523624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.051 kcal (2) G-P(sol) polarization free energy of solvation -56.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.11 seconds