Wall clock time and date at job start Tue Mar 31 2020 01:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.47164 * 2 1 4 4 C 1.46900 * 110.99972 * 293.18408 * 3 2 1 5 5 C 1.50696 * 109.46974 * 289.24104 * 4 3 2 6 6 H 1.08004 * 120.00641 * 355.21686 * 5 4 3 7 7 C 1.37881 * 119.99853 * 175.22391 * 5 4 3 8 8 N 1.31512 * 119.99779 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47164 * 89.99765 * 9 7 5 11 11 H 1.48493 * 109.47076 * 209.99942 * 9 7 5 12 12 H 1.48504 * 109.46967 * 329.99889 * 9 7 5 13 13 C 1.38684 * 110.99848 * 57.14249 * 3 2 1 14 14 N 1.32526 * 119.49715 * 235.77201 * 13 3 2 15 15 C 1.32144 * 121.73501 * 179.70803 * 14 13 3 16 16 O 1.35499 * 119.74165 * 180.29056 * 15 14 13 17 17 C 1.42894 * 116.99959 * 0.27474 * 16 15 14 18 18 C 1.40308 * 120.51818 * 0.56838 * 15 14 13 19 19 C 1.43197 * 120.51279 * 179.70085 * 18 15 14 20 20 N 7.35492 * 74.61511 * 46.74713 * 2 1 3 21 21 C 1.40329 * 118.97055 * 359.72253 * 18 15 14 22 22 C 1.38040 * 118.41111 * 0.02562 * 21 18 15 23 23 F 1.35104 * 120.31655 * 180.02562 * 22 21 18 24 24 H 1.09005 * 109.47446 * 184.49155 * 1 2 3 25 25 H 1.09005 * 109.47328 * 304.48597 * 1 2 3 26 26 H 1.09001 * 109.47186 * 64.48496 * 1 2 3 27 27 H 1.09004 * 109.47338 * 239.99821 * 2 1 3 28 28 H 1.09004 * 109.46819 * 119.99818 * 2 1 3 29 29 H 1.09002 * 109.46995 * 49.23492 * 4 3 2 30 30 H 1.08997 * 109.46986 * 169.23640 * 4 3 2 31 31 H 0.97002 * 119.99686 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47528 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47286 * 299.99556 * 17 16 15 34 34 H 1.08998 * 109.47661 * 60.00240 * 17 16 15 35 35 H 1.08000 * 120.79287 * 180.02562 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6861 2.0613 -1.2607 5 6 2.5266 1.4914 -2.3741 6 1 3.2911 0.7609 -2.1541 7 6 2.3198 1.9027 -3.6738 8 7 1.3887 2.7919 -3.9418 9 14 3.3622 1.1968 -5.0539 10 1 2.7063 -0.0197 -5.5970 11 1 3.5038 2.2066 -6.1334 12 1 4.7051 0.8424 -4.5283 13 6 1.5230 2.0877 1.0876 14 7 0.8548 3.2144 0.8866 15 6 0.3577 3.9161 1.8899 16 8 -0.3240 5.0597 1.6377 17 6 -0.4698 5.4393 0.2678 18 6 0.5351 3.4894 3.2147 19 6 0.0017 4.2532 4.3022 20 7 -0.4213 4.8591 5.1649 21 6 1.2436 2.3027 3.4574 22 6 1.7397 1.6012 2.3770 23 9 2.4271 0.4536 2.5663 24 1 -0.3634 -1.0245 0.0805 25 1 -0.3634 0.5819 0.8471 26 1 -0.3633 0.4427 -0.9274 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 0.6309 1.9080 -1.4871 30 1 1.8857 3.1285 -1.1643 31 1 1.2429 3.0810 -4.8562 32 1 -1.0333 6.3704 0.2067 33 1 0.5153 5.5815 -0.1767 34 1 -1.0022 4.6560 -0.2717 35 1 1.3972 1.9467 4.4655 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591070.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:37 Heat of formation + Delta-G solvation = 2.670657 kcal Electronic energy + Delta-G solvation = -21895.248505 eV Core-core repulsion = 18423.433845 eV Total energy + Delta-G solvation = -3471.814660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.72132 -40.80709 -38.58080 -37.02899 -36.02334 -32.82126 -32.43405 -30.40994 -29.52102 -27.57607 -26.56383 -24.06518 -23.84374 -22.44879 -20.68650 -19.32600 -18.13803 -17.67663 -16.47296 -16.34697 -16.01081 -15.45191 -15.22847 -14.94040 -14.57800 -14.24168 -13.77079 -13.66868 -13.57577 -13.19317 -12.95116 -12.80746 -12.45441 -12.30648 -12.04526 -11.73109 -11.63858 -11.27914 -11.01880 -10.88367 -10.73789 -10.43588 -10.25726 -9.95843 -9.58600 -9.44162 -8.80252 -8.51888 -7.54494 -6.17314 -4.20428 0.64911 1.13939 2.71722 2.96074 3.00273 3.23259 3.30683 3.33985 3.68954 3.80018 4.01457 4.31194 4.32808 4.58201 4.98411 5.11800 5.19140 5.38485 5.45480 5.52094 5.57333 5.58074 5.66061 5.77173 5.91003 6.04436 6.29473 6.35022 6.54331 6.89811 7.00510 7.22991 7.44225 7.58870 7.62903 7.88079 7.95398 8.23794 8.85706 9.43927 10.92722 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005655 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.347784 B = 4949.755070 C = 5889.316109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.053 3.947 3 N -0.461 5.461 4 C 0.195 3.805 5 C -0.523 4.523 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.388 3.612 14 N -0.542 5.542 15 C 0.396 3.604 16 O -0.302 6.302 17 C 0.037 3.963 18 C -0.141 4.141 19 C 0.282 3.718 20 N -0.432 5.432 21 C -0.008 4.008 22 C -0.022 4.022 23 F -0.122 7.122 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.263 0.737 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 -1.937 9.421 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.072 4.072 3 N -0.173 5.173 4 C 0.072 3.928 5 C -0.561 4.561 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.150 3.850 14 N -0.272 5.272 15 C 0.211 3.789 16 O -0.207 6.207 17 C -0.058 4.058 18 C -0.150 4.150 19 C -0.033 4.033 20 N -0.109 5.109 21 C -0.036 4.036 22 C -0.047 4.047 23 F -0.101 7.101 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.892 -0.519 9.833 10.262 hybrid contribution 0.368 -0.887 -0.783 1.239 sum -2.524 -1.406 9.050 9.500 Atomic orbital electron populations 1.22427 0.97105 1.01984 1.02580 1.22357 0.93383 0.86806 1.04690 1.59072 1.49594 1.04035 1.04647 1.19956 0.96653 0.95126 0.81072 1.21126 1.18857 1.25187 0.90946 0.91738 1.24920 0.95389 0.95029 0.98683 1.69949 1.32078 1.30779 1.20161 0.86490 0.80736 0.78713 0.81477 1.20601 1.21169 1.19711 1.20106 0.84843 0.89009 0.91031 1.67744 1.16323 1.10512 1.32587 1.19586 0.86562 0.85141 0.87612 1.86206 1.68137 1.35367 1.30959 1.23033 1.03415 1.00756 0.78592 1.15342 1.13665 0.99162 0.86831 1.24929 0.92912 0.93002 0.92444 1.81190 1.10238 1.09078 1.10388 1.21104 0.92098 0.90934 0.99464 1.17573 1.05731 0.88774 0.92660 1.91449 1.77399 1.45802 1.95444 0.91926 0.93720 0.90942 0.87852 0.90022 0.95738 0.93328 0.92727 0.88527 0.91176 0.91267 0.82421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.36 37.15 0.35 -2.50 16 2 C 0.05 0.89 5.59 -3.83 -0.02 0.87 16 3 N -0.46 -9.12 4.64 -174.51 -0.81 -9.93 16 4 C 0.19 4.58 3.96 -4.98 -0.02 4.56 16 5 C -0.52 -13.46 8.40 -34.44 -0.29 -13.74 16 6 H 0.06 1.65 7.63 -52.48 -0.40 1.25 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.39 6.84 4.82 -155.08 -0.75 6.09 16 14 N -0.54 -9.63 7.30 -12.14 -0.09 -9.72 16 15 C 0.40 6.23 7.50 -16.64 -0.12 6.10 16 16 O -0.30 -4.58 9.91 -18.19 -0.18 -4.76 16 17 C 0.04 0.50 10.38 101.05 1.05 1.55 16 18 C -0.14 -1.96 5.77 -106.41 -0.61 -2.57 16 19 C 0.28 4.07 14.90 -22.48 -0.33 3.73 16 20 N -0.43 -6.85 18.54 41.84 0.78 -6.07 16 21 C -0.01 -0.10 9.87 -38.87 -0.38 -0.48 16 22 C -0.02 -0.33 6.87 -39.18 -0.27 -0.60 16 23 F -0.12 -1.78 14.77 2.25 0.03 -1.74 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.68 6.90 -51.93 -0.36 0.32 16 26 H 0.07 1.30 6.58 -51.93 -0.34 0.95 16 27 H 0.10 1.85 7.15 -51.93 -0.37 1.48 16 28 H 0.08 1.23 5.79 -51.93 -0.30 0.93 16 29 H 0.02 0.62 6.18 -51.93 -0.32 0.29 16 30 H 0.05 1.25 7.27 -51.93 -0.38 0.87 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 35 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -28.18 308.54 -5.13 -33.30 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.72 Total: -1.80 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.51 Total: 4.54 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.61 Total: -49.47 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.18 Total: -4.76 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.03 Total: -1.74 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.18 -5.13 -33.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591070.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.975 kcal (2) G-P(sol) polarization free energy of solvation -28.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds