Wall clock time and date at job start Tue Mar 31 2020 01:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.47164 * 2 1 4 4 C 1.46900 * 110.99972 * 293.18408 * 3 2 1 5 5 C 1.50696 * 109.46974 * 289.24104 * 4 3 2 6 6 H 1.08004 * 120.00641 * 355.21686 * 5 4 3 7 7 C 1.37881 * 119.99853 * 175.22391 * 5 4 3 8 8 N 1.31512 * 119.99779 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47164 * 89.99765 * 9 7 5 11 11 H 1.48493 * 109.47076 * 209.99942 * 9 7 5 12 12 H 1.48504 * 109.46967 * 329.99889 * 9 7 5 13 13 C 1.38684 * 110.99848 * 57.14249 * 3 2 1 14 14 N 1.32526 * 119.49715 * 235.77201 * 13 3 2 15 15 C 1.32144 * 121.73501 * 179.70803 * 14 13 3 16 16 O 1.35499 * 119.74165 * 180.29056 * 15 14 13 17 17 C 1.42894 * 116.99959 * 0.27474 * 16 15 14 18 18 C 1.40308 * 120.51818 * 0.56838 * 15 14 13 19 19 C 1.43197 * 120.51279 * 179.70085 * 18 15 14 20 20 N 7.35492 * 74.61511 * 46.74713 * 2 1 3 21 21 C 1.40329 * 118.97055 * 359.72253 * 18 15 14 22 22 C 1.38040 * 118.41111 * 0.02562 * 21 18 15 23 23 F 1.35104 * 120.31655 * 180.02562 * 22 21 18 24 24 H 1.09005 * 109.47446 * 184.49155 * 1 2 3 25 25 H 1.09005 * 109.47328 * 304.48597 * 1 2 3 26 26 H 1.09001 * 109.47186 * 64.48496 * 1 2 3 27 27 H 1.09004 * 109.47338 * 239.99821 * 2 1 3 28 28 H 1.09004 * 109.46819 * 119.99818 * 2 1 3 29 29 H 1.09002 * 109.46995 * 49.23492 * 4 3 2 30 30 H 1.08997 * 109.46986 * 169.23640 * 4 3 2 31 31 H 0.97002 * 119.99686 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47528 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.47286 * 299.99556 * 17 16 15 34 34 H 1.08998 * 109.47661 * 60.00240 * 17 16 15 35 35 H 1.08000 * 120.79287 * 180.02562 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6861 2.0613 -1.2607 5 6 2.5266 1.4914 -2.3741 6 1 3.2911 0.7609 -2.1541 7 6 2.3198 1.9027 -3.6738 8 7 1.3887 2.7919 -3.9418 9 14 3.3622 1.1968 -5.0539 10 1 2.7063 -0.0197 -5.5970 11 1 3.5038 2.2066 -6.1334 12 1 4.7051 0.8424 -4.5283 13 6 1.5230 2.0877 1.0876 14 7 0.8548 3.2144 0.8866 15 6 0.3577 3.9161 1.8899 16 8 -0.3240 5.0597 1.6377 17 6 -0.4698 5.4393 0.2678 18 6 0.5351 3.4894 3.2147 19 6 0.0017 4.2532 4.3022 20 7 -0.4213 4.8591 5.1649 21 6 1.2436 2.3027 3.4574 22 6 1.7397 1.6012 2.3770 23 9 2.4271 0.4536 2.5663 24 1 -0.3634 -1.0245 0.0805 25 1 -0.3634 0.5819 0.8471 26 1 -0.3633 0.4427 -0.9274 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 0.6309 1.9080 -1.4871 30 1 1.8857 3.1285 -1.1643 31 1 1.2429 3.0810 -4.8562 32 1 -1.0333 6.3704 0.2067 33 1 0.5153 5.5815 -0.1767 34 1 -1.0022 4.6560 -0.2717 35 1 1.3972 1.9467 4.4655 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591070.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:35 Heat of formation + Delta-G solvation = -15.474467 kcal Electronic energy + Delta-G solvation = -21896.035337 eV Core-core repulsion = 18423.433845 eV Total energy + Delta-G solvation = -3472.601492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -49.88881 -42.07352 -39.89795 -38.29492 -37.31177 -34.77027 -33.68273 -31.66156 -31.03191 -29.08033 -27.93938 -25.43735 -25.36784 -23.79548 -22.18568 -20.52227 -19.39264 -18.96781 -18.32660 -17.61773 -17.38385 -16.74444 -16.56906 -16.49243 -15.86609 -15.74359 -14.95391 -14.86469 -14.83519 -14.62070 -14.24399 -14.15863 -13.86188 -13.62633 -13.51528 -13.20054 -12.89858 -12.81765 -12.67661 -12.51909 -12.25096 -12.06855 -11.76450 -11.39920 -11.12356 -10.87268 -10.57086 -10.16518 -8.92328 -8.18463 -6.28344 -0.57343 -0.01961 1.44229 1.45656 1.53193 1.56067 1.74690 1.83963 2.35709 2.49314 2.59642 2.79482 3.10423 3.15695 3.30120 3.81545 3.95180 4.12504 4.25660 4.29136 4.39706 4.40712 4.49679 4.55787 4.77263 4.78771 4.92614 5.06620 5.15310 5.36850 5.40723 5.58436 5.81637 5.93535 6.00675 6.39109 6.40554 6.64607 6.88135 7.40175 8.91659 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.005655 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.347784 B = 4949.755070 C = 5889.316109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.052 3.948 3 N -0.477 5.477 4 C 0.220 3.780 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.013 3.987 8 N -0.924 5.924 9 Si 0.963 3.037 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.366 3.634 14 N -0.568 5.568 15 C 0.384 3.616 16 O -0.306 6.306 17 C 0.041 3.959 18 C -0.126 4.126 19 C 0.299 3.701 20 N -0.450 5.450 21 C 0.022 3.978 22 C -0.017 4.017 23 F -0.118 7.118 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.001 0.999 30 H 0.018 0.982 31 H 0.264 0.736 32 H 0.131 0.869 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 -2.875 11.100 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.073 4.073 3 N -0.190 5.190 4 C 0.095 3.905 5 C -0.572 4.572 6 H 0.082 0.918 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.788 3.212 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.129 3.871 14 N -0.298 5.298 15 C 0.199 3.801 16 O -0.211 6.211 17 C -0.054 4.054 18 C -0.135 4.135 19 C -0.016 4.016 20 N -0.127 5.127 21 C -0.005 4.005 22 C -0.042 4.042 23 F -0.096 7.096 24 H 0.110 0.890 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.019 0.981 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.549 -1.465 11.542 11.911 hybrid contribution 0.208 -0.545 -1.193 1.328 sum -2.341 -2.011 10.349 10.799 Atomic orbital electron populations 1.22309 0.96270 1.03519 1.00938 1.22441 0.94130 0.85649 1.05052 1.59063 1.51334 1.04968 1.03659 1.19367 0.94795 0.93546 0.82761 1.21452 1.18903 1.24952 0.91934 0.91843 1.25736 0.96475 0.95314 1.01100 1.70071 1.33614 1.32086 1.20636 0.85483 0.79254 0.78094 0.78400 1.19714 1.21116 1.19156 1.20174 0.86112 0.89253 0.91523 1.67619 1.17105 1.10986 1.34095 1.19795 0.86850 0.85347 0.88067 1.86211 1.68087 1.35287 1.31488 1.23076 1.02666 1.01748 0.77871 1.15374 1.13000 0.99337 0.85743 1.24773 0.92343 0.92486 0.91959 1.81226 1.10747 1.09539 1.11198 1.21467 0.89294 0.89085 1.00681 1.17476 1.05797 0.89048 0.91882 1.91461 1.77333 1.45550 1.95286 0.88975 0.93439 0.94114 0.89352 0.87590 0.98101 0.96432 0.92701 0.85088 0.92956 0.92753 0.77921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 9.36 71.98 0.67 -4.65 16 2 C 0.05 1.74 5.59 86.30 0.48 2.22 16 3 N -0.48 -19.16 4.64 -706.03 -3.28 -22.43 16 4 C 0.22 10.82 3.96 85.56 0.34 11.15 16 5 C -0.53 -28.26 8.40 25.60 0.22 -28.05 16 6 H 0.06 3.29 7.63 -2.91 -0.02 3.27 16 7 C 0.01 0.70 5.46 84.66 0.46 1.16 16 8 N -0.92 -52.38 13.29 21.45 0.28 -52.10 16 9 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 C 0.37 12.79 4.82 133.22 0.64 13.44 16 14 N -0.57 -20.55 7.30 -305.34 -2.23 -22.78 16 15 C 0.38 11.85 7.50 85.15 0.64 12.49 16 16 O -0.31 -9.16 9.91 -88.00 -0.87 -10.03 16 17 C 0.04 1.13 10.38 113.37 1.18 2.31 16 18 C -0.13 -3.18 5.77 -21.02 -0.12 -3.30 16 19 C 0.30 7.83 14.90 88.33 1.32 9.14 16 20 N -0.45 -13.20 18.54 19.00 0.35 -12.84 16 21 C 0.02 0.46 9.87 22.73 0.22 0.69 16 22 C -0.02 -0.46 6.87 22.53 0.15 -0.31 16 23 F -0.12 -3.07 14.77 44.97 0.66 -2.41 16 24 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.05 1.42 6.90 -2.38 -0.02 1.40 16 26 H 0.04 1.51 6.58 -2.39 -0.02 1.49 16 27 H 0.09 3.20 7.15 -2.39 -0.02 3.19 16 28 H 0.11 3.02 5.79 -2.39 -0.01 3.00 16 29 H 0.00 0.06 6.18 -2.39 -0.01 0.05 16 30 H 0.02 0.96 7.27 -2.39 -0.02 0.94 16 31 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.13 2.65 8.14 -2.38 -0.02 2.63 16 33 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 34 H 0.05 1.65 8.11 -2.39 -0.02 1.63 16 35 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -62.26 308.54 4.29 -57.98 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.13 Total: 4.27 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.20 Total: 16.30 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.87 Total: -110.15 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.87 Total: -10.03 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.66 Total: -2.41 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -62.26 4.29 -57.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591070.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.501 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds