Wall clock time and date at job start Tue Mar 31 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76202 * 100.00085 * 2 1 4 4 N 1.32558 * 119.18261 * 0.02562 * 3 2 1 5 5 C 1.32472 * 120.93089 * 179.97438 * 4 3 2 6 6 C 1.38151 * 119.29246 * 359.74003 * 5 4 3 7 7 C 1.39660 * 118.49917 * 0.50170 * 6 5 4 8 8 N 1.38535 * 120.47918 * 179.77910 * 7 6 5 9 9 C 1.46847 * 111.00230 * 55.76680 * 8 7 6 10 10 C 1.53044 * 109.51335 * 185.83358 * 9 8 7 11 11 C 1.53117 * 109.27792 * 300.82256 * 10 9 8 12 12 C 1.53127 * 109.15989 * 57.65607 * 11 10 9 13 13 H 1.08997 * 109.50037 * 62.28538 * 12 11 10 14 14 C 1.50698 * 109.50246 * 182.40233 * 12 11 10 15 15 H 1.07995 * 119.99723 * 119.99836 * 14 12 11 16 16 C 1.37871 * 120.00046 * 300.00305 * 14 12 11 17 17 N 1.31516 * 120.00227 * 179.97438 * 16 14 12 18 18 Si 1.86800 * 120.00150 * 359.97438 * 16 14 12 19 19 H 1.48502 * 109.46937 * 90.00064 * 18 16 14 20 20 H 1.48494 * 109.47244 * 210.00062 * 18 16 14 21 21 H 1.48495 * 109.47221 * 330.00543 * 18 16 14 22 22 C 1.46830 * 110.98211 * 179.97438 * 8 7 6 23 23 N 1.32501 * 119.18638 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47421 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47497 * 299.99905 * 1 2 3 26 26 H 1.09001 * 109.47073 * 60.00244 * 1 2 3 27 27 H 1.07990 * 120.35747 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.75082 * 180.25323 * 6 5 4 29 29 H 1.09002 * 109.46448 * 65.82080 * 9 8 7 30 30 H 1.08994 * 109.45958 * 305.84445 * 9 8 7 31 31 H 1.09001 * 109.49858 * 60.76701 * 10 9 8 32 32 H 1.09000 * 109.49965 * 180.88251 * 10 9 8 33 33 H 1.08997 * 109.52073 * 177.56286 * 11 10 9 34 34 H 1.08998 * 109.52156 * 297.68928 * 11 10 9 35 35 H 0.97003 * 120.00257 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.46742 * 54.13763 * 22 8 7 37 37 H 1.09004 * 109.45381 * 294.16097 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0885 2.5727 0.0005 5 6 1.2786 3.8838 0.0010 6 6 2.5680 4.3797 0.0065 7 6 3.6306 3.4735 0.0006 8 7 4.9400 3.9259 0.0011 9 6 5.1871 4.8210 1.1387 10 6 6.5936 5.4138 1.0267 11 6 7.6210 4.2786 1.0137 12 6 7.3120 3.3343 -0.1514 13 1 7.4037 3.8759 -1.0929 14 6 8.2829 2.1819 -0.1362 15 1 7.9186 1.1702 -0.0359 16 6 9.6362 2.4192 -0.2504 17 7 10.4837 1.4136 -0.2366 18 14 10.2663 4.1691 -0.4246 19 1 10.5327 4.7356 0.9220 20 1 11.5217 4.1666 -1.2177 21 1 9.2453 4.9963 -1.1163 22 6 5.8846 2.8019 -0.0051 23 7 3.3674 2.1707 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.4348 4.5576 0.0019 28 1 2.7501 5.4442 0.0112 29 1 5.1030 4.2584 2.0685 30 1 4.4522 5.6260 1.1337 31 1 6.6739 5.9881 0.1037 32 1 6.7826 6.0660 1.8794 33 1 8.6212 4.6940 0.8905 34 1 7.5682 3.7287 1.9533 35 1 11.4358 1.5805 -0.3173 36 1 5.6565 2.1403 -0.8407 37 1 5.7972 2.2490 0.9302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:00 Heat of formation + Delta-G solvation = 37.067864 kcal Electronic energy + Delta-G solvation = -19594.034933 eV Core-core repulsion = 16689.925024 eV Total energy + Delta-G solvation = -2904.109909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.17255 -39.94388 -36.22076 -34.60856 -33.76207 -32.13368 -31.91489 -29.72670 -27.24373 -26.33766 -25.48955 -23.66861 -22.94349 -20.74945 -19.60032 -18.88629 -18.41330 -17.50403 -16.66764 -16.46648 -16.20105 -15.71115 -15.63179 -15.29570 -15.01185 -14.85106 -14.55258 -14.27162 -14.16812 -13.88812 -13.48995 -12.97393 -12.91718 -12.40261 -12.19356 -12.11516 -11.90283 -11.81131 -11.55774 -11.44718 -11.38708 -11.04599 -10.96317 -10.65869 -10.33769 -9.63675 -8.81557 -8.31565 -6.37215 -0.21908 0.12209 0.22380 1.25771 1.29447 1.36869 1.48037 2.32101 2.35320 2.68531 3.03292 3.25498 3.63835 3.79985 3.93941 3.99187 4.15747 4.26375 4.35626 4.36378 4.39561 4.44998 4.48261 4.64278 4.71194 4.83897 4.91779 4.94443 4.99181 5.11852 5.19975 5.38454 5.45048 5.61828 5.72659 5.99428 6.09600 6.28122 6.68904 6.91806 7.28047 8.85744 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.004830 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.194346 B = 5796.281284 C = 6747.924792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.044 6.044 3 C 0.304 3.696 4 N -0.553 5.553 5 C 0.176 3.824 6 C -0.243 4.243 7 C 0.350 3.650 8 N -0.476 5.476 9 C 0.066 3.934 10 C -0.113 4.113 11 C -0.126 4.126 12 C 0.019 3.981 13 H 0.029 0.971 14 C -0.524 4.524 15 H 0.025 0.975 16 C 0.012 3.988 17 N -0.951 5.951 18 Si 0.956 3.044 19 H -0.260 1.260 20 H -0.299 1.299 21 H -0.243 1.243 22 C 0.108 3.892 23 N -0.577 5.577 24 H 0.130 0.870 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.218 0.782 28 H 0.182 0.818 29 H 0.040 0.960 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.267 0.733 36 H 0.051 0.949 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.985 9.612 2.939 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.189 5.811 3 C -0.073 4.073 4 N -0.274 5.274 5 C 0.010 3.990 6 C -0.271 4.271 7 C 0.107 3.893 8 N -0.193 5.193 9 C -0.058 4.058 10 C -0.151 4.151 11 C -0.164 4.164 12 C 0.000 4.000 13 H 0.047 0.953 14 C -0.563 4.563 15 H 0.043 0.957 16 C -0.185 4.185 17 N -0.591 5.591 18 Si 0.782 3.218 19 H -0.185 1.185 20 H -0.227 1.227 21 H -0.167 1.167 22 C -0.019 4.019 23 N -0.301 5.301 24 H 0.148 0.852 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.235 0.765 28 H 0.200 0.800 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -21.119 7.885 2.524 22.684 hybrid contribution 0.464 1.243 0.271 1.354 sum -20.655 9.128 2.795 22.754 Atomic orbital electron populations 1.23576 0.90620 1.07835 1.07222 1.86139 1.10569 0.93925 1.90473 1.24907 0.86565 1.01241 0.94618 1.68811 1.33118 1.05457 1.20032 1.23752 0.97350 0.90864 0.86991 1.22613 0.92488 1.02880 1.09148 1.20611 0.91718 0.88400 0.88544 1.58969 0.99634 1.19051 1.41606 1.22405 0.99651 0.95427 0.88353 1.21698 0.92195 0.97237 1.03965 1.21973 0.98258 0.96955 0.99216 1.19134 0.91301 0.94228 0.95319 0.95295 1.21225 0.91791 0.93057 1.50191 0.95688 1.25917 0.96827 1.01829 0.93896 1.70065 1.03112 1.33715 1.52199 0.85731 0.77303 0.79924 0.78835 1.18544 1.22724 1.16695 1.21575 0.90893 0.89882 0.99551 1.68468 1.23026 1.17423 1.21150 0.85190 0.88863 0.88991 0.76512 0.80044 0.94163 0.85982 0.90564 0.87952 0.93818 0.93127 0.92440 0.93085 0.95696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.62 113.37 1.09 -0.96 16 2 S -0.04 -1.21 22.89 -56.49 -1.29 -2.50 16 3 C 0.30 9.62 7.85 180.44 1.42 11.04 16 4 N -0.55 -14.06 9.13 -196.71 -1.80 -15.86 16 5 C 0.18 3.38 11.28 84.58 0.95 4.33 16 6 C -0.24 -5.34 9.26 22.59 0.21 -5.13 16 7 C 0.35 11.32 6.41 133.20 0.85 12.17 16 8 N -0.48 -16.47 4.68 -701.50 -3.28 -19.75 16 9 C 0.07 1.78 5.25 86.33 0.45 2.24 16 10 C -0.11 -3.24 6.09 30.65 0.19 -3.05 16 11 C -0.13 -5.12 4.73 30.68 0.15 -4.97 16 12 C 0.02 0.94 1.85 -11.48 -0.02 0.91 16 13 H 0.03 1.43 7.21 -2.39 -0.02 1.41 16 14 C -0.52 -31.24 9.15 25.60 0.23 -31.01 16 15 H 0.02 1.67 7.99 -2.91 -0.02 1.65 16 16 C 0.01 0.73 5.45 84.65 0.46 1.19 16 17 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 18 Si 0.96 45.17 24.35 68.60 1.67 46.84 16 19 H -0.26 -11.41 6.89 99.48 0.69 -10.72 16 20 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 21 H -0.24 -10.58 6.53 99.48 0.65 -9.93 16 22 C 0.11 4.80 3.89 86.33 0.34 5.13 16 23 N -0.58 -21.42 8.80 -194.02 -1.71 -23.12 16 24 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.09 1.49 8.11 -2.39 -0.02 1.47 16 26 H 0.09 1.50 8.11 -2.39 -0.02 1.48 16 27 H 0.22 1.88 8.06 -2.92 -0.02 1.85 16 28 H 0.18 2.61 7.22 -2.91 -0.02 2.59 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.12 2.22 6.74 -2.39 -0.02 2.20 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.04 1.83 3.34 -2.39 -0.01 1.82 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 36 H 0.05 2.52 7.73 -2.39 -0.02 2.50 16 37 H 0.02 1.19 8.12 -2.38 -0.02 1.17 16 Total: -1.00 -76.30 306.81 1.20 -75.10 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.99 Total: 8.15 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 6.32 Total: -8.10 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -6.49 Total: -119.48 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -1.29 Total: -2.50 kcal Total: -76.30 1.20 -75.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.167 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds