Wall clock time and date at job start Tue Mar 31 2020 01:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76207 * 99.99780 * 2 1 4 4 C 1.39247 * 120.49083 * 180.02562 * 3 2 1 5 5 C 1.39097 * 118.26289 * 179.97438 * 4 3 2 6 6 N 1.38640 * 120.48275 * 180.02562 * 5 4 3 7 7 C 1.46847 * 110.99866 * 56.04345 * 6 5 4 8 8 C 1.53034 * 109.51345 * 185.84678 * 7 6 5 9 9 C 1.53123 * 109.27992 * 300.80438 * 8 7 6 10 10 C 1.53127 * 109.15019 * 57.67185 * 9 8 7 11 11 H 1.08999 * 109.50124 * 62.28085 * 10 9 8 12 12 C 1.50695 * 109.50372 * 182.39855 * 10 9 8 13 13 H 1.07998 * 119.99836 * 119.79929 * 12 10 9 14 14 C 1.37876 * 120.00238 * 299.80684 * 12 10 9 15 15 N 1.31516 * 120.00302 * 180.02562 * 14 12 10 16 16 Si 1.86806 * 119.99895 * 359.97438 * 14 12 10 17 17 H 1.48501 * 109.46808 * 90.00053 * 16 14 12 18 18 H 1.48501 * 109.47297 * 210.00234 * 16 14 12 19 19 H 1.48502 * 109.46930 * 330.00196 * 16 14 12 20 20 C 1.46843 * 110.99937 * 180.25601 * 6 5 4 21 21 N 1.33223 * 119.03688 * 0.27328 * 5 4 3 22 22 C 1.31740 * 120.89074 * 359.44028 * 21 5 4 23 23 N 1.31741 * 121.92160 * 0.58025 * 22 21 5 24 24 H 1.08996 * 109.47122 * 299.99915 * 1 2 3 25 25 H 1.08996 * 109.46869 * 60.00002 * 1 2 3 26 26 H 1.09004 * 109.46873 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.86560 * 359.95388 * 4 3 2 28 28 H 1.09002 * 109.46481 * 305.85830 * 7 6 5 29 29 H 1.08994 * 109.46283 * 65.83683 * 7 6 5 30 30 H 1.08997 * 109.50952 * 60.75924 * 8 7 6 31 31 H 1.08998 * 109.50459 * 180.87821 * 8 7 6 32 32 H 1.09003 * 109.53012 * 297.76758 * 9 8 7 33 33 H 1.08997 * 109.57453 * 177.60035 * 9 8 7 34 34 H 0.96995 * 120.00116 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.46313 * 294.17516 * 20 6 5 36 36 H 1.09004 * 109.46429 * 54.14867 * 20 6 5 37 37 H 1.08001 * 119.03814 * 180.31196 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4203 2.2228 -0.0005 5 6 3.6083 3.6010 -0.0011 6 7 4.8872 4.1363 -0.0021 7 6 5.6675 3.6328 -1.1397 8 6 7.1113 4.1274 -1.0282 9 6 7.1218 5.6586 -1.0161 10 6 6.2627 6.1576 0.1491 11 1 6.6921 5.8152 1.0905 12 6 6.2194 7.6639 0.1332 13 1 5.2741 8.1758 0.0297 14 6 7.3865 8.3884 0.2507 15 7 7.3487 9.7029 0.2374 16 14 9.0215 7.5028 0.4302 17 1 9.6017 7.2573 -0.9145 18 1 9.9538 8.3412 1.2260 19 1 8.8087 6.2061 1.1219 20 6 4.8433 5.6041 0.0036 21 7 2.5417 4.3992 0.0045 22 6 1.3228 3.8993 -0.0006 23 7 1.1026 2.6004 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.2638 1.5484 -0.0002 28 1 5.6555 2.5429 -1.1344 29 1 5.2299 3.9962 -2.0695 30 1 7.5541 3.7531 -0.1051 31 1 7.6866 3.7665 -1.8808 32 1 6.7147 6.0331 -1.9554 33 1 8.1442 6.0159 -0.8940 34 1 8.1698 10.2126 0.3204 35 1 4.4095 5.9581 -0.9315 36 1 4.2328 5.9459 0.8394 37 1 0.4795 4.5740 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166741174.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:33 Heat of formation + Delta-G solvation = 57.023931 kcal Electronic energy + Delta-G solvation = -19496.472948 eV Core-core repulsion = 16593.228399 eV Total energy + Delta-G solvation = -2903.244549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03153 -38.57425 -34.67504 -33.11432 -32.20716 -30.71936 -30.37986 -29.14528 -25.51865 -25.04125 -24.05426 -22.52575 -21.34651 -19.16357 -18.37126 -17.48834 -16.63045 -16.13570 -15.45568 -15.21084 -15.06797 -14.44618 -14.12446 -13.97075 -13.94740 -13.62647 -13.32625 -12.97138 -12.63909 -12.52227 -12.34844 -11.42132 -11.21551 -11.08910 -11.01178 -10.74749 -10.65999 -10.31114 -10.17818 -10.00448 -9.74851 -9.31041 -9.19904 -8.98190 -8.55225 -8.30091 -7.92911 -6.09145 -4.09007 0.89986 1.08367 1.23610 1.91697 3.24911 3.36958 3.39106 3.53724 3.84601 4.23768 4.39198 4.57207 4.88276 4.93728 4.97352 5.12908 5.20846 5.25643 5.34665 5.39766 5.56192 5.59429 5.75180 5.99662 6.04106 6.12436 6.21464 6.33087 6.54266 6.57411 6.65342 6.82275 7.10427 7.18300 7.33857 7.52421 7.74349 8.16339 8.49194 8.94704 9.52487 11.03980 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038277 B = 0.004093 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.327292 B = 6839.749621 C = 7384.960444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.061 6.061 3 C 0.171 3.829 4 C -0.230 4.230 5 C 0.381 3.619 6 N -0.474 5.474 7 C 0.068 3.932 8 C -0.122 4.122 9 C -0.127 4.127 10 C 0.016 3.984 11 H 0.036 0.964 12 C -0.513 4.513 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.900 5.900 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.297 1.297 19 H -0.264 1.264 20 C 0.086 3.914 21 N -0.554 5.554 22 C 0.335 3.665 23 N -0.558 5.558 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.147 0.853 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.264 0.736 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.735 -19.069 -2.479 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.177 5.823 3 C -0.084 4.084 4 C -0.263 4.263 5 C 0.140 3.860 6 N -0.190 5.190 7 C -0.057 4.057 8 C -0.160 4.160 9 C -0.164 4.164 10 C -0.003 4.003 11 H 0.054 0.946 12 C -0.552 4.552 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.225 1.225 19 H -0.189 1.189 20 C -0.039 4.039 21 N -0.275 5.275 22 C 0.042 3.958 23 N -0.279 5.279 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.165 0.835 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.360 -19.434 -2.046 21.667 hybrid contribution 0.455 0.508 -0.415 0.798 sum -8.905 -18.926 -2.461 21.060 Atomic orbital electron populations 1.23427 0.93707 1.05910 1.07172 1.85750 1.08180 0.97490 1.90923 1.23151 0.91649 0.99017 0.94564 1.21799 0.97390 0.95731 1.11349 1.20149 0.89754 0.89336 0.86810 1.58890 1.07123 1.13059 1.39900 1.22213 0.94562 0.99359 0.89562 1.21718 0.93874 0.98437 1.01923 1.22103 1.00692 0.92165 1.01470 1.19266 0.90286 0.96451 0.94298 0.94608 1.20921 0.95430 0.88229 1.50590 0.90655 1.24976 0.98976 0.94657 0.94410 1.69892 1.28151 1.05346 1.50387 0.86853 0.83865 0.79764 0.77856 1.20612 1.22494 1.18861 1.22158 0.99950 0.79705 1.02072 1.68557 0.99396 1.40272 1.19314 1.24743 0.93576 0.89040 0.88392 1.68695 1.33825 1.04551 1.20865 0.89164 0.89187 0.88181 0.83508 0.90583 0.93418 0.91311 0.91664 0.92099 0.93035 0.92611 0.93330 0.89943 0.78713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.68 101.05 0.98 -0.07 16 2 S -0.06 -0.62 22.73 -107.50 -2.44 -3.07 16 3 C 0.17 2.27 7.00 -16.57 -0.12 2.15 16 4 C -0.23 -3.26 9.04 -38.89 -0.35 -3.61 16 5 C 0.38 6.28 6.40 -154.68 -0.99 5.29 16 6 N -0.47 -8.35 4.68 -173.13 -0.81 -9.16 16 7 C 0.07 1.04 5.25 -3.84 -0.02 1.02 16 8 C -0.12 -1.97 6.09 -26.65 -0.16 -2.14 16 9 C -0.13 -2.61 4.74 -26.60 -0.13 -2.74 16 10 C 0.02 0.38 1.85 -91.69 -0.17 0.21 16 11 H 0.04 0.87 7.19 -51.93 -0.37 0.50 16 12 C -0.51 -14.21 9.14 -34.44 -0.31 -14.53 16 13 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 14 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 15 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 16 Si 0.89 21.63 24.36 -169.99 -4.14 17.49 16 17 H -0.28 -6.59 6.89 56.52 0.39 -6.20 16 18 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 19 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 20 C 0.09 1.78 3.89 -3.83 -0.01 1.76 16 21 N -0.55 -9.22 8.84 -13.88 -0.12 -9.35 16 22 C 0.34 4.64 12.28 -92.25 -1.13 3.51 16 23 N -0.56 -7.52 9.30 -13.45 -0.13 -7.65 16 24 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.10 0.55 8.14 -51.91 -0.42 0.13 16 27 H 0.15 1.83 7.23 -52.49 -0.38 1.45 16 28 H 0.08 0.95 6.75 -51.93 -0.35 0.60 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.13 3.37 -51.93 -0.17 0.95 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.08 1.80 7.73 -51.93 -0.40 1.40 16 37 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -30.73 306.95 -9.84 -40.57 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.08 Total: 0.30 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -2.52 Total: -7.20 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.28 Total: -52.72 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -2.44 Total: -3.07 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.73 -9.84 -40.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741174.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.598 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds