Wall clock time and date at job start Tue Mar 31 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76207 * 99.99780 * 2 1 4 4 C 1.39247 * 120.49083 * 180.02562 * 3 2 1 5 5 C 1.39097 * 118.26289 * 179.97438 * 4 3 2 6 6 N 1.38640 * 120.48275 * 180.02562 * 5 4 3 7 7 C 1.46847 * 110.99866 * 56.04345 * 6 5 4 8 8 C 1.53034 * 109.51345 * 185.84678 * 7 6 5 9 9 C 1.53123 * 109.27992 * 300.80438 * 8 7 6 10 10 C 1.53127 * 109.15019 * 57.67185 * 9 8 7 11 11 H 1.08999 * 109.50124 * 62.28085 * 10 9 8 12 12 C 1.50695 * 109.50372 * 182.39855 * 10 9 8 13 13 H 1.07998 * 119.99836 * 119.79929 * 12 10 9 14 14 C 1.37876 * 120.00238 * 299.80684 * 12 10 9 15 15 N 1.31516 * 120.00302 * 180.02562 * 14 12 10 16 16 Si 1.86806 * 119.99895 * 359.97438 * 14 12 10 17 17 H 1.48501 * 109.46808 * 90.00053 * 16 14 12 18 18 H 1.48501 * 109.47297 * 210.00234 * 16 14 12 19 19 H 1.48502 * 109.46930 * 330.00196 * 16 14 12 20 20 C 1.46843 * 110.99937 * 180.25601 * 6 5 4 21 21 N 1.33223 * 119.03688 * 0.27328 * 5 4 3 22 22 C 1.31740 * 120.89074 * 359.44028 * 21 5 4 23 23 N 1.31741 * 121.92160 * 0.58025 * 22 21 5 24 24 H 1.08996 * 109.47122 * 299.99915 * 1 2 3 25 25 H 1.08996 * 109.46869 * 60.00002 * 1 2 3 26 26 H 1.09004 * 109.46873 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.86560 * 359.95388 * 4 3 2 28 28 H 1.09002 * 109.46481 * 305.85830 * 7 6 5 29 29 H 1.08994 * 109.46283 * 65.83683 * 7 6 5 30 30 H 1.08997 * 109.50952 * 60.75924 * 8 7 6 31 31 H 1.08998 * 109.50459 * 180.87821 * 8 7 6 32 32 H 1.09003 * 109.53012 * 297.76758 * 9 8 7 33 33 H 1.08997 * 109.57453 * 177.60035 * 9 8 7 34 34 H 0.96995 * 120.00116 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.46313 * 294.17516 * 20 6 5 36 36 H 1.09004 * 109.46429 * 54.14867 * 20 6 5 37 37 H 1.08001 * 119.03814 * 180.31196 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4203 2.2228 -0.0005 5 6 3.6083 3.6010 -0.0011 6 7 4.8872 4.1363 -0.0021 7 6 5.6675 3.6328 -1.1397 8 6 7.1113 4.1274 -1.0282 9 6 7.1218 5.6586 -1.0161 10 6 6.2627 6.1576 0.1491 11 1 6.6921 5.8152 1.0905 12 6 6.2194 7.6639 0.1332 13 1 5.2741 8.1758 0.0297 14 6 7.3865 8.3884 0.2507 15 7 7.3487 9.7029 0.2374 16 14 9.0215 7.5028 0.4302 17 1 9.6017 7.2573 -0.9145 18 1 9.9538 8.3412 1.2260 19 1 8.8087 6.2061 1.1219 20 6 4.8433 5.6041 0.0036 21 7 2.5417 4.3992 0.0045 22 6 1.3228 3.8993 -0.0006 23 7 1.1026 2.6004 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.2638 1.5484 -0.0002 28 1 5.6555 2.5429 -1.1344 29 1 5.2299 3.9962 -2.0695 30 1 7.5541 3.7531 -0.1051 31 1 7.6866 3.7665 -1.8808 32 1 6.7147 6.0331 -1.9554 33 1 8.1442 6.0159 -0.8940 34 1 8.1698 10.2126 0.3204 35 1 4.4095 5.9581 -0.9315 36 1 4.2328 5.9459 0.8394 37 1 0.4795 4.5740 -0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741174.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:31 Heat of formation + Delta-G solvation = 37.933831 kcal Electronic energy + Delta-G solvation = -19497.300757 eV Core-core repulsion = 16593.228399 eV Total energy + Delta-G solvation = -2904.072358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.18747 -39.94494 -36.21149 -34.59331 -33.77779 -32.13246 -31.85333 -29.79619 -27.24670 -26.39740 -25.35157 -23.81874 -22.88398 -20.75586 -19.59770 -18.84759 -18.41999 -17.33126 -16.60475 -16.46214 -16.35207 -15.77578 -15.58731 -15.35851 -14.99381 -14.85358 -14.70996 -14.30836 -14.17470 -13.84546 -13.37018 -12.97066 -12.91633 -12.39423 -12.29044 -12.10820 -11.94851 -11.81300 -11.67039 -11.51000 -11.34248 -11.01277 -10.95980 -10.64643 -10.33057 -9.57040 -8.79649 -8.30617 -6.35648 -0.15952 -0.04829 0.34424 1.18555 1.30517 1.37782 1.48575 2.32927 2.34479 2.70234 3.04527 3.20017 3.42461 3.82591 3.90177 3.97961 4.11268 4.22680 4.34002 4.35707 4.39123 4.44749 4.49184 4.63063 4.69815 4.83893 4.93119 4.96208 5.01464 5.08474 5.14015 5.39520 5.45753 5.63137 5.72543 5.99718 6.01552 6.28972 6.70726 7.06040 7.29719 8.86390 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038277 B = 0.004093 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.327292 B = 6839.749621 C = 7384.960444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.037 6.037 3 C 0.160 3.840 4 C -0.229 4.229 5 C 0.360 3.640 6 N -0.479 5.479 7 C 0.066 3.934 8 C -0.114 4.114 9 C -0.126 4.126 10 C 0.018 3.982 11 H 0.028 0.972 12 C -0.521 4.521 13 H 0.029 0.971 14 C 0.013 3.987 15 N -0.950 5.950 16 Si 0.953 3.047 17 H -0.261 1.261 18 H -0.300 1.300 19 H -0.245 1.245 20 C 0.107 3.893 21 N -0.589 5.589 22 C 0.331 3.669 23 N -0.554 5.554 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.129 0.871 27 H 0.167 0.833 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.031 0.969 36 H 0.058 0.942 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 -23.078 -2.960 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.200 5.800 3 C -0.095 4.095 4 C -0.261 4.261 5 C 0.120 3.880 6 N -0.195 5.195 7 C -0.059 4.059 8 C -0.151 4.151 9 C -0.164 4.164 10 C -0.001 4.001 11 H 0.046 0.954 12 C -0.560 4.560 13 H 0.048 0.952 14 C -0.184 4.184 15 N -0.591 5.591 16 Si 0.779 3.221 17 H -0.187 1.187 18 H -0.228 1.228 19 H -0.168 1.168 20 C -0.019 4.019 21 N -0.312 5.312 22 C 0.038 3.962 23 N -0.276 5.276 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.147 0.853 27 H 0.184 0.816 28 H 0.131 0.869 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.060 -23.485 -2.537 25.299 hybrid contribution 0.113 1.702 -0.264 1.726 sum -8.946 -21.783 -2.801 23.715 Atomic orbital electron populations 1.23554 0.91823 1.07726 1.06954 1.85719 1.10195 0.94248 1.89849 1.23706 0.91475 1.00880 0.93414 1.21927 0.98506 0.94700 1.10954 1.20253 0.89191 0.90433 0.88146 1.58908 1.08579 1.10492 1.41540 1.22374 0.93477 1.01388 0.88618 1.21690 0.95111 0.94482 1.03838 1.21977 0.99047 0.95916 0.99449 1.19148 0.92474 0.93296 0.95204 0.95416 1.21225 0.93720 0.91132 1.49885 0.95217 1.25886 1.03240 0.95275 0.94043 1.70053 1.29378 1.07323 1.52301 0.85775 0.78497 0.79020 0.78770 1.18654 1.22826 1.16833 1.21632 0.97700 0.82470 1.00130 1.68522 1.00502 1.41507 1.20636 1.25270 0.93442 0.89820 0.87633 1.68803 1.33863 1.04361 1.20578 0.89450 0.89300 0.85322 0.81566 0.86916 0.93717 0.90780 0.88079 0.92869 0.93905 0.92480 0.95055 0.92348 0.76212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.68 113.37 1.10 -0.55 16 2 S -0.04 -0.65 22.73 -56.49 -1.28 -1.94 16 3 C 0.16 3.89 7.00 84.72 0.59 4.48 16 4 C -0.23 -5.97 9.04 22.72 0.21 -5.76 16 5 C 0.36 11.57 6.40 132.93 0.85 12.42 16 6 N -0.48 -16.47 4.68 -701.68 -3.28 -19.75 16 7 C 0.07 1.83 5.25 86.32 0.45 2.28 16 8 C -0.11 -3.30 6.09 30.65 0.19 -3.12 16 9 C -0.13 -5.05 4.74 30.68 0.15 -4.91 16 10 C 0.02 0.85 1.85 -11.49 -0.02 0.83 16 11 H 0.03 1.35 7.19 -2.39 -0.02 1.33 16 12 C -0.52 -30.29 9.14 25.60 0.23 -30.05 16 13 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 14 C 0.01 0.74 5.45 84.65 0.46 1.20 16 15 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 16 Si 0.95 44.81 24.36 68.60 1.67 46.48 16 17 H -0.26 -11.44 6.89 99.48 0.69 -10.75 16 18 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 19 H -0.24 -10.65 6.53 99.48 0.65 -10.00 16 20 C 0.11 4.57 3.89 86.33 0.34 4.90 16 21 N -0.59 -19.76 8.84 -197.84 -1.75 -21.51 16 22 C 0.33 8.92 12.28 180.92 2.22 11.14 16 23 N -0.55 -14.01 9.30 -196.46 -1.83 -15.84 16 24 H 0.09 1.20 8.14 -2.40 -0.02 1.18 16 25 H 0.09 1.19 8.14 -2.40 -0.02 1.17 16 26 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.17 3.56 7.23 -2.91 -0.02 3.54 16 28 H 0.11 2.34 6.75 -2.39 -0.02 2.32 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.04 1.78 3.37 -2.39 -0.01 1.77 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.03 1.40 8.12 -2.39 -0.02 1.38 16 36 H 0.06 2.70 7.73 -2.38 -0.02 2.69 16 37 H 0.22 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -70.07 306.95 1.58 -68.50 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.99 Total: 11.06 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 6.76 Total: -7.13 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -6.56 Total: -116.96 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.48 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -1.28 Total: -1.94 kcal Total: -70.07 1.58 -68.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741174.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.431 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds