Wall clock time and date at job start Tue Mar 31 2020 00:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.95798 * 2 1 4 4 C 1.38385 * 120.13697 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 119.97650 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.04823 * 359.68662 * 4 3 2 7 7 C 1.38871 * 119.90784 * 0.61222 * 6 4 3 8 8 N 1.39673 * 120.06564 * 179.67838 * 7 6 4 9 9 C 1.46500 * 120.00033 * 359.73018 * 8 7 6 10 10 H 1.08999 * 109.35190 * 35.17421 * 9 8 7 11 11 C 1.52961 * 109.41292 * 154.99712 * 9 8 7 12 12 C 1.53225 * 109.40481 * 183.70152 * 11 9 8 13 13 C 1.51271 * 108.53890 * 305.37474 * 12 11 9 14 14 C 1.37871 * 120.84844 * 231.32519 * 13 12 11 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 13 12 16 16 Si 1.86803 * 119.99886 * 179.72715 * 14 13 12 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 13 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 13 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 13 20 20 C 1.51268 * 118.29624 * 51.59717 * 13 12 11 21 21 C 1.52955 * 109.41225 * 275.35298 * 9 8 7 22 22 C 1.38091 * 119.95108 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47229 * 269.97796 * 1 2 3 24 24 H 1.09007 * 109.46799 * 29.97674 * 1 2 3 25 25 H 1.08997 * 109.47152 * 149.96998 * 1 2 3 26 26 H 1.07999 * 119.93311 * 0.02562 * 3 2 1 27 27 H 1.07991 * 120.04750 * 180.31881 * 6 4 3 28 28 H 0.97003 * 119.99771 * 179.72969 * 8 7 6 29 29 H 1.09001 * 109.48201 * 63.72671 * 11 9 8 30 30 H 1.08997 * 109.48590 * 303.68421 * 11 9 8 31 31 H 1.09001 * 109.62986 * 185.65653 * 12 11 9 32 32 H 1.09002 * 109.62566 * 65.09094 * 12 11 9 33 33 H 0.96999 * 120.00235 * 179.72806 * 15 14 13 34 34 H 1.08999 * 109.63123 * 68.11720 * 20 13 12 35 35 H 1.09002 * 109.62283 * 188.68554 * 20 13 12 36 36 H 1.09006 * 109.48244 * 296.27345 * 21 9 8 37 37 H 1.08995 * 109.48742 * 56.30025 * 21 9 8 38 38 H 1.07999 * 120.02856 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1981 0.0000 4 6 3.5814 1.2024 -0.0005 5 17 4.4441 2.7089 -0.0012 6 6 4.2774 0.0079 0.0055 7 6 3.5859 -1.1964 -0.0008 8 7 4.2858 -2.4051 -0.0016 9 6 5.7508 -2.4033 -0.0017 10 1 6.1110 -1.5626 0.5912 11 6 6.2609 -3.7105 0.6073 12 6 7.7902 -3.6699 0.6921 13 6 8.3404 -3.3669 -0.6841 14 6 9.3202 -4.1590 -1.2439 15 7 9.7890 -5.1930 -0.5800 16 14 9.9772 -3.7676 -2.9482 17 1 9.1622 -4.4760 -3.9676 18 1 9.9009 -2.3033 -3.1839 19 1 11.3904 -4.2121 -3.0481 20 6 7.7923 -2.1691 -1.4277 21 6 6.2589 -2.2673 -1.4379 22 6 2.1965 -1.1965 -0.0005 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8897 -0.5143 26 1 1.6558 2.1323 0.0004 27 1 5.3573 0.0113 0.0103 28 1 3.8018 -3.2458 -0.0020 29 1 5.9537 -4.5477 -0.0194 30 1 5.8445 -3.8326 1.6072 31 1 8.1639 -4.6361 1.0312 32 1 8.0977 -2.8903 1.3891 33 1 10.4756 -5.7526 -0.9755 34 1 8.0999 -1.2529 -0.9235 35 1 8.1673 -2.1705 -2.4512 36 1 5.9517 -3.1387 -2.0163 37 1 5.8409 -1.3668 -1.8877 38 1 1.6561 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:09 Heat of formation + Delta-G solvation = -7.351146 kcal Electronic energy + Delta-G solvation = -19328.539532 eV Core-core repulsion = 16388.167012 eV Total energy + Delta-G solvation = -2940.372520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.61524 -37.45526 -36.35928 -34.50056 -32.24950 -31.70849 -29.83788 -29.13824 -26.97577 -26.56086 -22.48131 -22.35155 -21.44659 -20.48375 -19.39615 -17.16086 -16.28389 -15.89518 -15.56065 -14.52566 -14.43897 -14.17250 -14.06029 -13.41851 -13.24226 -12.92086 -12.68959 -12.45344 -12.38699 -12.20880 -11.89131 -11.59516 -11.38346 -11.22714 -11.03685 -10.84486 -10.80552 -10.65400 -10.15848 -10.05679 -9.81968 -9.44400 -9.02175 -8.69790 -8.52892 -8.51575 -7.17100 -6.15196 -4.06378 1.34715 1.64875 2.25498 3.23957 3.33360 3.35053 3.75185 3.84375 4.34599 4.79702 5.11897 5.15609 5.23486 5.32965 5.49382 5.52780 5.56095 5.66735 5.79112 5.87441 5.89361 6.08451 6.33546 6.41481 6.44212 6.56569 6.59498 6.64602 6.71838 6.80953 6.91007 6.98308 7.05478 7.35732 7.55327 7.64292 7.67047 7.77182 8.04244 8.32358 8.91092 9.49706 10.94300 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.004434 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.353387 B = 6313.135754 C = 6947.725163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.030 4.030 3 C -0.187 4.187 4 C 0.022 3.978 5 Cl -0.081 7.081 6 C -0.199 4.199 7 C 0.246 3.754 8 N -0.735 5.735 9 C 0.157 3.843 10 H 0.070 0.930 11 C -0.113 4.113 12 C 0.013 3.987 13 C -0.490 4.490 14 C 0.077 3.923 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.266 1.266 19 H -0.290 1.290 20 C -0.014 4.014 21 C -0.119 4.119 22 C -0.205 4.205 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.123 0.877 27 H 0.136 0.864 28 H 0.396 0.604 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.006 0.994 33 H 0.265 0.735 34 H 0.018 0.982 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.300 8.991 1.091 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.031 4.031 3 C -0.208 4.208 4 C -0.005 4.005 5 Cl -0.052 7.052 6 C -0.222 4.222 7 C 0.138 3.862 8 N -0.359 5.359 9 C 0.053 3.947 10 H 0.088 0.912 11 C -0.152 4.152 12 C -0.025 4.025 13 C -0.509 4.509 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.191 1.191 19 H -0.216 1.216 20 C -0.052 4.052 21 C -0.158 4.158 22 C -0.228 4.228 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.153 0.847 28 H 0.231 0.769 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.847 8.951 1.093 17.371 hybrid contribution 0.353 -0.119 -0.992 1.059 sum -14.493 8.832 0.101 16.973 Atomic orbital electron populations 1.20774 0.91055 1.02698 1.02306 1.19445 0.95533 0.91938 0.96188 1.20501 0.91635 0.98093 1.10542 1.20556 0.91988 0.86244 1.01736 1.98352 1.77448 1.32499 1.96869 1.20581 1.00688 0.89564 1.11378 1.17698 0.90668 0.86658 0.91131 1.45326 1.06820 1.04331 1.79450 1.21065 0.76600 0.99721 0.97278 0.91233 1.21902 1.00877 0.94948 0.97444 1.19341 0.88531 0.98889 0.95737 1.20028 1.19837 1.09683 1.01366 1.24839 0.95731 0.94541 0.97493 1.69829 1.28651 1.16359 1.37862 0.86667 0.78066 0.78970 0.84719 1.20426 1.19145 1.21602 1.19810 0.91092 0.97309 0.97034 1.22094 0.99071 0.99425 0.95239 1.20499 0.91978 0.98066 1.12284 0.91085 0.91525 0.91497 0.85920 0.84660 0.76938 0.92756 0.94588 0.92101 0.97602 0.92542 0.96335 0.94998 0.92810 0.94589 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.03 -0.36 5.88 -104.66 -0.61 -0.97 16 3 C -0.19 -2.36 9.48 -39.51 -0.37 -2.74 16 4 C 0.02 0.31 6.32 -39.52 -0.25 0.06 16 5 Cl -0.08 -1.08 28.95 -51.86 -1.50 -2.58 16 6 C -0.20 -3.09 8.60 -39.34 -0.34 -3.43 16 7 C 0.25 3.67 6.63 -83.79 -0.56 3.12 16 8 N -0.73 -11.28 5.25 -52.21 -0.27 -11.55 16 9 C 0.16 2.86 2.05 -67.97 -0.14 2.72 16 10 H 0.07 1.32 6.47 -51.93 -0.34 0.98 16 11 C -0.11 -2.25 5.40 -26.63 -0.14 -2.39 16 12 C 0.01 0.31 5.97 -27.49 -0.16 0.14 16 13 C -0.49 -12.52 5.50 -98.92 -0.54 -13.07 16 14 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 15 N -0.89 -25.11 12.73 55.43 0.71 -24.40 16 16 Si 0.89 20.87 27.28 -169.99 -4.64 16.23 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.11 6.45 56.52 0.36 -5.74 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 C -0.01 -0.33 5.62 -27.26 -0.15 -0.48 16 21 C -0.12 -2.36 5.45 -26.41 -0.14 -2.51 16 22 C -0.21 -2.64 9.55 -39.37 -0.38 -3.01 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.14 2.25 6.18 -52.49 -0.32 1.93 16 28 H 0.40 5.41 8.61 -40.82 -0.35 5.05 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.60 7.07 -51.93 -0.37 1.24 16 32 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.03 0.73 4.77 -51.93 -0.25 0.48 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -26.98 317.10 -9.89 -36.86 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.42 Total: 1.85 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -3.54 Total: -21.18 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.43 Total: -35.95 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.64 Total: 16.23 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.98 -9.89 -36.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.511 kcal (2) G-P(sol) polarization free energy of solvation -26.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds