Wall clock time and date at job start Tue Mar 31 2020 00:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.95798 * 2 1 4 4 C 1.38385 * 120.13697 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 119.97650 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.04823 * 359.68662 * 4 3 2 7 7 C 1.38871 * 119.90784 * 0.61222 * 6 4 3 8 8 N 1.39673 * 120.06564 * 179.67838 * 7 6 4 9 9 C 1.46500 * 120.00033 * 359.73018 * 8 7 6 10 10 H 1.08999 * 109.35190 * 35.17421 * 9 8 7 11 11 C 1.52961 * 109.41292 * 154.99712 * 9 8 7 12 12 C 1.53225 * 109.40481 * 183.70152 * 11 9 8 13 13 C 1.51271 * 108.53890 * 305.37474 * 12 11 9 14 14 C 1.37871 * 120.84844 * 231.32519 * 13 12 11 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 13 12 16 16 Si 1.86803 * 119.99886 * 179.72715 * 14 13 12 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 13 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 13 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 13 20 20 C 1.51268 * 118.29624 * 51.59717 * 13 12 11 21 21 C 1.52955 * 109.41225 * 275.35298 * 9 8 7 22 22 C 1.38091 * 119.95108 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47229 * 269.97796 * 1 2 3 24 24 H 1.09007 * 109.46799 * 29.97674 * 1 2 3 25 25 H 1.08997 * 109.47152 * 149.96998 * 1 2 3 26 26 H 1.07999 * 119.93311 * 0.02562 * 3 2 1 27 27 H 1.07991 * 120.04750 * 180.31881 * 6 4 3 28 28 H 0.97003 * 119.99771 * 179.72969 * 8 7 6 29 29 H 1.09001 * 109.48201 * 63.72671 * 11 9 8 30 30 H 1.08997 * 109.48590 * 303.68421 * 11 9 8 31 31 H 1.09001 * 109.62986 * 185.65653 * 12 11 9 32 32 H 1.09002 * 109.62566 * 65.09094 * 12 11 9 33 33 H 0.96999 * 120.00235 * 179.72806 * 15 14 13 34 34 H 1.08999 * 109.63123 * 68.11720 * 20 13 12 35 35 H 1.09002 * 109.62283 * 188.68554 * 20 13 12 36 36 H 1.09006 * 109.48244 * 296.27345 * 21 9 8 37 37 H 1.08995 * 109.48742 * 56.30025 * 21 9 8 38 38 H 1.07999 * 120.02856 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1981 0.0000 4 6 3.5814 1.2024 -0.0005 5 17 4.4441 2.7089 -0.0012 6 6 4.2774 0.0079 0.0055 7 6 3.5859 -1.1964 -0.0008 8 7 4.2858 -2.4051 -0.0016 9 6 5.7508 -2.4033 -0.0017 10 1 6.1110 -1.5626 0.5912 11 6 6.2609 -3.7105 0.6073 12 6 7.7902 -3.6699 0.6921 13 6 8.3404 -3.3669 -0.6841 14 6 9.3202 -4.1590 -1.2439 15 7 9.7890 -5.1930 -0.5800 16 14 9.9772 -3.7676 -2.9482 17 1 9.1622 -4.4760 -3.9676 18 1 9.9009 -2.3033 -3.1839 19 1 11.3904 -4.2121 -3.0481 20 6 7.7923 -2.1691 -1.4277 21 6 6.2589 -2.2673 -1.4379 22 6 2.1965 -1.1965 -0.0005 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8897 -0.5143 26 1 1.6558 2.1323 0.0004 27 1 5.3573 0.0113 0.0103 28 1 3.8018 -3.2458 -0.0020 29 1 5.9537 -4.5477 -0.0194 30 1 5.8445 -3.8326 1.6072 31 1 8.1639 -4.6361 1.0312 32 1 8.0977 -2.8903 1.3891 33 1 10.4756 -5.7526 -0.9755 34 1 8.0999 -1.2529 -0.9235 35 1 8.1673 -2.1705 -2.4512 36 1 5.9517 -3.1387 -2.0163 37 1 5.8409 -1.3668 -1.8877 38 1 1.6561 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:09 Heat of formation + Delta-G solvation = -20.319297 kcal Electronic energy + Delta-G solvation = -19329.101873 eV Core-core repulsion = 16388.167012 eV Total energy + Delta-G solvation = -2940.934861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73058 -38.91680 -37.43814 -35.95244 -33.81096 -32.90194 -31.54082 -30.56023 -28.20378 -27.75170 -24.06705 -23.63149 -23.03273 -21.80240 -20.91725 -18.50923 -17.72545 -17.24553 -16.68879 -16.41189 -15.67714 -15.35739 -15.19646 -14.90051 -14.60664 -14.30465 -14.05942 -13.89777 -13.67433 -13.48757 -13.11709 -12.98093 -12.76694 -12.63100 -12.42468 -12.32063 -12.25912 -11.89480 -11.85945 -11.63980 -11.46966 -10.96772 -10.77975 -10.55952 -10.42220 -9.54247 -8.33682 -8.18470 -6.12415 0.31271 0.60961 1.20397 1.36545 1.40696 1.48650 2.39464 2.51455 2.80714 3.11104 3.87415 4.02653 4.19295 4.23239 4.31558 4.42986 4.46625 4.52461 4.67920 4.70845 4.90699 4.92491 4.94557 4.97069 5.06723 5.11801 5.21963 5.23132 5.29608 5.32895 5.42225 5.56007 5.61164 5.66444 5.74466 5.80963 5.87699 6.33133 6.39696 6.91139 6.94191 7.45845 8.92240 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.004434 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.353387 B = 6313.135754 C = 6947.725163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.027 4.027 3 C -0.185 4.185 4 C 0.010 3.990 5 Cl -0.080 7.080 6 C -0.220 4.220 7 C 0.231 3.769 8 N -0.732 5.732 9 C 0.173 3.827 10 H 0.062 0.938 11 C -0.101 4.101 12 C 0.009 3.991 13 C -0.498 4.498 14 C 0.024 3.976 15 N -0.930 5.930 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.256 1.256 19 H -0.292 1.292 20 C -0.017 4.017 21 C -0.110 4.110 22 C -0.202 4.202 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.142 0.858 27 H 0.117 0.883 28 H 0.406 0.594 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.000 1.000 33 H 0.263 0.737 34 H 0.019 0.981 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.112 10.181 0.503 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.028 4.028 3 C -0.206 4.206 4 C -0.017 4.017 5 Cl -0.051 7.051 6 C -0.244 4.244 7 C 0.125 3.875 8 N -0.359 5.359 9 C 0.068 3.932 10 H 0.080 0.920 11 C -0.139 4.139 12 C -0.029 4.029 13 C -0.517 4.517 14 C -0.174 4.174 15 N -0.570 5.570 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.181 1.181 19 H -0.219 1.219 20 C -0.055 4.055 21 C -0.149 4.149 22 C -0.225 4.225 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.160 0.840 27 H 0.135 0.865 28 H 0.242 0.758 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.019 0.981 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.696 10.169 0.501 20.416 hybrid contribution 1.143 -0.397 -0.736 1.416 sum -16.554 9.771 -0.235 19.224 Atomic orbital electron populations 1.20855 0.88279 1.03999 1.03528 1.19880 0.97472 0.91122 0.94362 1.20832 0.91024 0.99447 1.09248 1.20704 0.92766 0.85976 1.02237 1.98348 1.77628 1.32244 1.96885 1.20549 1.00028 0.90629 1.13173 1.17839 0.91561 0.85965 0.92160 1.44951 1.05300 1.05176 1.80486 1.20621 0.78589 0.98171 0.95831 0.92025 1.21671 0.97744 0.95836 0.98697 1.19300 0.91628 0.96903 0.95111 1.20615 1.19127 1.10024 1.01951 1.25565 0.96413 0.94781 1.00689 1.69958 1.29808 1.17782 1.39458 0.85849 0.77289 0.79254 0.81176 1.19920 1.18071 1.21886 1.19825 0.93238 0.95994 0.96455 1.21953 0.96806 0.99708 0.96456 1.20786 0.91087 0.99532 1.11054 0.89741 0.90236 0.90299 0.84022 0.86465 0.75810 0.93235 0.92720 0.95175 0.98146 0.92797 0.96269 0.95133 0.93339 0.93368 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 2 C -0.03 -0.55 5.88 -19.89 -0.12 -0.67 16 3 C -0.18 -4.15 9.48 22.32 0.21 -3.94 16 4 C 0.01 0.28 6.32 22.31 0.14 0.42 16 5 Cl -0.08 -2.06 28.95 -2.72 -0.08 -2.14 16 6 C -0.22 -6.63 8.60 22.42 0.19 -6.44 16 7 C 0.23 6.44 6.63 38.21 0.25 6.69 16 8 N -0.73 -21.20 5.25 -319.10 -1.67 -22.87 16 9 C 0.17 6.15 2.05 44.96 0.09 6.24 16 10 H 0.06 2.32 6.47 -2.39 -0.02 2.30 16 11 C -0.10 -3.98 5.40 30.66 0.17 -3.81 16 12 C 0.01 0.42 5.97 30.10 0.18 0.60 16 13 C -0.50 -25.75 5.50 -16.17 -0.09 -25.84 16 14 C 0.02 1.30 5.46 84.65 0.46 1.76 16 15 N -0.93 -54.11 12.73 21.45 0.27 -53.84 16 16 Si 0.94 43.13 27.28 68.60 1.87 45.00 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.26 -11.24 6.45 99.48 0.64 -10.59 16 19 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 20 C -0.02 -0.77 5.62 30.25 0.17 -0.60 16 21 C -0.11 -4.26 5.45 30.80 0.17 -4.09 16 22 C -0.20 -4.56 9.55 22.40 0.21 -4.35 16 23 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.83 8.08 -2.38 -0.02 0.81 16 25 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 26 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 27 H 0.12 3.89 6.18 -2.91 -0.02 3.88 16 28 H 0.41 10.17 8.61 -92.71 -0.80 9.37 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.03 1.63 7.07 -2.39 -0.02 1.62 16 32 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.03 1.36 4.77 -2.39 -0.01 1.35 16 36 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.05 1.74 7.75 -2.39 -0.02 1.73 16 38 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -58.49 317.10 3.35 -55.14 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.20 Total: 13.39 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 2.76 Total: -34.68 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -1.40 Total: -76.71 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.87 Total: 45.00 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -58.49 3.35 -55.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.819 kcal (2) G-P(sol) polarization free energy of solvation -58.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds