Wall clock time and date at job start Tue Mar 31 2020 01:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 C 1.50699 * 109.46610 * 184.99834 * 4 2 1 6 6 C 1.38249 * 119.98621 * 269.72496 * 5 4 2 7 7 C 1.38215 * 120.01134 * 179.73166 * 6 5 4 8 8 C 1.38349 * 119.98840 * 0.54591 * 7 6 5 9 9 Cl 1.73594 * 120.01577 * 179.70431 * 8 7 6 10 10 C 1.38352 * 119.97310 * 359.72783 * 8 7 6 11 11 C 1.38222 * 119.98777 * 359.97438 * 10 8 7 12 12 N 1.46898 * 109.47222 * 239.99546 * 2 1 3 13 13 C 1.47478 * 111.00236 * 155.97588 * 12 2 1 14 14 C 1.53518 * 87.93115 * 221.29828 * 13 12 2 15 15 C 1.50701 * 114.16923 * 139.67273 * 14 13 12 16 16 H 1.08007 * 119.99328 * 266.15966 * 15 14 13 17 17 C 1.37876 * 120.00403 * 86.15618 * 15 14 13 18 18 N 1.31510 * 119.99993 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99702 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46833 * 90.00015 * 19 17 15 21 21 H 1.48501 * 109.46868 * 209.99749 * 19 17 15 22 22 H 1.48500 * 109.47281 * 330.00006 * 19 17 15 23 23 C 1.47483 * 110.99873 * 60.00206 * 12 2 1 24 24 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 25 25 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 27 27 H 1.08992 * 109.47046 * 304.99570 * 4 2 1 28 28 H 1.08997 * 109.47395 * 65.00111 * 4 2 1 29 29 H 1.07998 * 119.99050 * 359.97438 * 6 5 4 30 30 H 1.07998 * 120.00641 * 180.26941 * 7 6 5 31 31 H 1.08000 * 120.01069 * 179.97438 * 10 8 7 32 32 H 1.07999 * 119.99372 * 179.97438 * 11 10 8 33 33 H 1.08998 * 113.47206 * 336.06141 * 13 12 2 34 34 H 1.09004 * 113.47632 * 106.53170 * 13 12 2 35 35 H 1.08993 * 114.16952 * 272.37573 * 14 13 12 36 36 H 0.97006 * 119.99657 * 179.97438 * 18 17 15 37 37 H 1.08999 * 113.47469 * 253.46858 * 23 12 2 38 38 H 1.08995 * 113.47275 * 23.87692 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6150 1.3128 6 6 4.3288 -1.5849 0.7202 7 6 5.7063 -1.4850 0.7733 8 6 6.2976 -0.4201 1.4293 9 17 8.0277 -0.2980 1.5030 10 6 5.5095 0.5473 2.0270 11 6 4.1320 0.4496 1.9680 12 7 2.0197 -0.6926 -1.1994 13 6 3.3815 -0.2467 -1.5482 14 6 2.9446 -0.2472 -3.0199 15 6 3.4687 0.9178 -3.8194 16 1 2.8688 1.8089 -3.9319 17 6 4.7138 0.8461 -4.4073 18 7 5.1708 1.8626 -5.1054 19 14 5.7515 -0.6949 -4.2121 20 1 5.4490 -1.6387 -5.3180 21 1 7.1906 -0.3308 -4.2517 22 1 5.4396 -1.3402 -2.9114 23 6 1.5468 -0.0239 -2.4259 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6053 -0.2617 2.1370 28 1 1.7515 -1.7715 1.2057 29 1 3.8670 -2.4188 0.2124 30 1 6.3210 -2.2405 0.3067 31 1 5.9705 1.3786 2.5396 32 1 3.5167 1.2045 2.4349 33 1 3.6243 0.7454 -1.1677 34 1 4.1511 -0.9852 -1.3234 35 1 3.0682 -1.2068 -3.5218 36 1 6.0470 1.8122 -5.5187 37 1 0.7616 -0.5735 -2.9449 38 1 1.2991 1.0274 -2.2793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168168616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:23 Heat of formation + Delta-G solvation = 46.362904 kcal Electronic energy + Delta-G solvation = -19993.663443 eV Core-core repulsion = 17055.620139 eV Total energy + Delta-G solvation = -2938.043304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -40.07731 -38.65122 -36.41401 -34.42514 -32.33963 -31.05639 -30.86512 -27.78302 -26.45023 -24.80431 -23.66104 -22.71142 -21.48853 -19.85854 -18.68205 -17.03880 -16.87208 -15.86405 -15.35829 -15.09055 -14.61834 -14.02604 -13.79076 -13.72446 -13.41921 -13.20279 -12.85552 -12.59923 -12.05912 -11.94804 -11.83723 -11.59516 -11.43858 -11.26809 -11.17673 -10.87725 -10.76954 -10.68928 -10.25100 -9.94747 -9.83349 -9.40837 -9.17747 -8.77096 -8.54865 -8.35723 -8.03266 -6.08748 -4.08455 1.26559 1.43020 2.24155 3.30874 3.39788 3.43361 3.73615 4.43985 4.65372 4.82153 4.89287 4.99811 5.14319 5.25465 5.36357 5.43704 5.45991 5.59920 5.74751 5.78236 5.84850 5.93979 5.97416 6.04533 6.08456 6.24612 6.32268 6.35307 6.36448 6.46585 6.51407 6.54426 6.71815 6.82313 6.91964 7.03621 7.38039 7.71693 7.90147 8.50688 8.94090 9.54768 11.03901 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.008620 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.862555 B = 3247.480944 C = 5107.653075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.068 4.068 5 C -0.072 4.072 6 C -0.081 4.081 7 C -0.114 4.114 8 C -0.036 4.036 9 Cl -0.081 7.081 10 C -0.113 4.113 11 C -0.107 4.107 12 N -0.478 5.478 13 C -0.006 4.006 14 C -0.003 4.003 15 C -0.510 4.510 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.899 5.899 19 Si 0.873 3.127 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.256 1.256 23 C 0.011 3.989 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.264 0.736 37 H 0.064 0.936 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -5.601 15.637 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 H 0.066 0.934 4 C -0.105 4.105 5 C -0.072 4.072 6 C -0.099 4.099 7 C -0.133 4.133 8 C -0.062 4.062 9 Cl -0.052 7.052 10 C -0.132 4.132 11 C -0.125 4.125 12 N -0.201 5.201 13 C -0.135 4.135 14 C -0.023 4.023 15 C -0.548 4.548 16 H 0.090 0.910 17 C -0.128 4.128 18 N -0.537 5.537 19 Si 0.700 3.300 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.180 1.180 23 C -0.117 4.117 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.545 -6.218 15.706 17.083 hybrid contribution 1.057 0.328 -0.085 1.110 sum -1.488 -5.890 15.621 16.761 Atomic orbital electron populations 1.21824 0.94681 1.02143 1.01494 1.22190 0.95188 0.96362 0.92327 0.93448 1.20620 0.90355 1.02141 0.97420 1.19951 0.96241 0.94357 0.96641 1.21023 0.92329 0.99350 0.97173 1.21034 0.95288 0.97661 0.99318 1.20861 0.84065 0.98221 1.03068 1.98352 1.11471 1.98020 1.97404 1.20934 0.93532 0.98276 1.00472 1.20948 0.93782 0.97951 0.99861 1.68906 1.06167 1.44716 1.00309 1.24513 0.90923 0.98396 0.99661 1.20544 0.91969 0.97808 0.91968 1.20910 1.02198 1.00546 1.31103 0.90953 1.24989 0.97589 0.96074 0.94102 1.69908 1.19031 1.30902 1.33833 0.86904 0.79526 0.83951 0.79607 1.20397 1.21497 1.18013 1.23720 0.99588 0.96988 0.91426 0.92313 0.92145 0.92836 0.91070 0.90263 0.84802 0.85296 0.85351 0.85544 0.92219 0.91219 0.92816 0.92656 0.91788 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.09 37.16 0.34 -1.47 16 2 C 0.05 0.72 1.98 -67.71 -0.13 0.59 16 3 H 0.05 0.77 7.52 -51.93 -0.39 0.38 16 4 C -0.07 -0.85 5.03 -27.88 -0.14 -0.99 16 5 C -0.07 -0.99 4.07 -104.62 -0.43 -1.42 16 6 C -0.08 -1.18 6.23 -39.59 -0.25 -1.43 16 7 C -0.11 -1.70 9.70 -39.55 -0.38 -2.08 16 8 C -0.04 -0.52 6.32 -39.50 -0.25 -0.77 16 9 Cl -0.08 -1.13 28.96 -51.86 -1.50 -2.64 16 10 C -0.11 -1.54 9.83 -39.55 -0.39 -1.93 16 11 C -0.11 -1.41 9.70 -39.59 -0.38 -1.79 16 12 N -0.48 -8.50 6.04 -236.57 -1.43 -9.93 16 13 C -0.01 -0.13 4.45 -7.54 -0.03 -0.16 16 14 C 0.00 -0.08 2.96 -91.24 -0.27 -0.35 16 15 C -0.51 -14.13 9.37 -34.44 -0.32 -14.45 16 16 H 0.07 2.18 8.06 -52.48 -0.42 1.75 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 19 Si 0.87 21.51 27.14 -169.99 -4.61 16.89 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.26 -5.95 5.68 56.52 0.32 -5.63 16 23 C 0.01 0.22 6.01 -7.54 -0.05 0.18 16 24 H 0.06 0.78 7.03 -51.93 -0.37 0.41 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 29 H 0.13 1.92 7.97 -52.49 -0.42 1.50 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.06 1.33 7.49 -51.93 -0.39 0.95 16 34 H 0.07 1.45 4.40 -51.93 -0.23 1.22 16 35 H 0.05 1.27 7.04 -51.93 -0.37 0.90 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.19 7.61 -51.93 -0.40 0.79 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -29.41 316.40 -10.35 -39.76 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.57 Total: 1.83 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -2.78 Total: -24.03 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.66 Total: -36.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.61 Total: 16.89 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.41 -10.35 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168168616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.122 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds