Wall clock time and date at job start Tue Mar 31 2020 01:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 C 1.50699 * 109.46610 * 184.99834 * 4 2 1 6 6 C 1.38249 * 119.98621 * 269.72496 * 5 4 2 7 7 C 1.38215 * 120.01134 * 179.73166 * 6 5 4 8 8 C 1.38349 * 119.98840 * 0.54591 * 7 6 5 9 9 Cl 1.73594 * 120.01577 * 179.70431 * 8 7 6 10 10 C 1.38352 * 119.97310 * 359.72783 * 8 7 6 11 11 C 1.38222 * 119.98777 * 359.97438 * 10 8 7 12 12 N 1.46898 * 109.47222 * 239.99546 * 2 1 3 13 13 C 1.47478 * 111.00236 * 155.97588 * 12 2 1 14 14 C 1.53518 * 87.93115 * 221.29828 * 13 12 2 15 15 C 1.50701 * 114.16923 * 139.67273 * 14 13 12 16 16 H 1.08007 * 119.99328 * 266.15966 * 15 14 13 17 17 C 1.37876 * 120.00403 * 86.15618 * 15 14 13 18 18 N 1.31510 * 119.99993 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99702 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46833 * 90.00015 * 19 17 15 21 21 H 1.48501 * 109.46868 * 209.99749 * 19 17 15 22 22 H 1.48500 * 109.47281 * 330.00006 * 19 17 15 23 23 C 1.47483 * 110.99873 * 60.00206 * 12 2 1 24 24 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 25 25 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 27 27 H 1.08992 * 109.47046 * 304.99570 * 4 2 1 28 28 H 1.08997 * 109.47395 * 65.00111 * 4 2 1 29 29 H 1.07998 * 119.99050 * 359.97438 * 6 5 4 30 30 H 1.07998 * 120.00641 * 180.26941 * 7 6 5 31 31 H 1.08000 * 120.01069 * 179.97438 * 10 8 7 32 32 H 1.07999 * 119.99372 * 179.97438 * 11 10 8 33 33 H 1.08998 * 113.47206 * 336.06141 * 13 12 2 34 34 H 1.09004 * 113.47632 * 106.53170 * 13 12 2 35 35 H 1.08993 * 114.16952 * 272.37573 * 14 13 12 36 36 H 0.97006 * 119.99657 * 179.97438 * 18 17 15 37 37 H 1.08999 * 113.47469 * 253.46858 * 23 12 2 38 38 H 1.08995 * 113.47275 * 23.87692 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6150 1.3128 6 6 4.3288 -1.5849 0.7202 7 6 5.7063 -1.4850 0.7733 8 6 6.2976 -0.4201 1.4293 9 17 8.0277 -0.2980 1.5030 10 6 5.5095 0.5473 2.0270 11 6 4.1320 0.4496 1.9680 12 7 2.0197 -0.6926 -1.1994 13 6 3.3815 -0.2467 -1.5482 14 6 2.9446 -0.2472 -3.0199 15 6 3.4687 0.9178 -3.8194 16 1 2.8688 1.8089 -3.9319 17 6 4.7138 0.8461 -4.4073 18 7 5.1708 1.8626 -5.1054 19 14 5.7515 -0.6949 -4.2121 20 1 5.4490 -1.6387 -5.3180 21 1 7.1906 -0.3308 -4.2517 22 1 5.4396 -1.3402 -2.9114 23 6 1.5468 -0.0239 -2.4259 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6053 -0.2617 2.1370 28 1 1.7515 -1.7715 1.2057 29 1 3.8670 -2.4188 0.2124 30 1 6.3210 -2.2405 0.3067 31 1 5.9705 1.3786 2.5396 32 1 3.5167 1.2045 2.4349 33 1 3.6243 0.7454 -1.1677 34 1 4.1511 -0.9852 -1.3234 35 1 3.0682 -1.2068 -3.5218 36 1 6.0470 1.8122 -5.5187 37 1 0.7616 -0.5735 -2.9449 38 1 1.2991 1.0274 -2.2793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168168616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:21 Heat of formation + Delta-G solvation = 28.810001 kcal Electronic energy + Delta-G solvation = -19994.424594 eV Core-core repulsion = 17055.620139 eV Total energy + Delta-G solvation = -2938.804455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41800 -39.90276 -37.50831 -35.75922 -34.36811 -32.14349 -31.98888 -29.55604 -27.56428 -26.33390 -25.43683 -23.77043 -22.61441 -21.15078 -20.42983 -18.96796 -18.05986 -17.20449 -16.63467 -16.36477 -16.11763 -15.56598 -15.24360 -15.03630 -14.64130 -14.43469 -14.34247 -13.99684 -13.43053 -13.16899 -13.09137 -13.05818 -12.93589 -12.65707 -12.35246 -12.25168 -12.07980 -11.85531 -11.75561 -11.64042 -11.46719 -11.18336 -11.01666 -10.64151 -9.91623 -9.68271 -9.35804 -8.30120 -6.33579 0.19258 0.37378 1.16128 1.34476 1.37653 1.49038 2.36030 2.67104 3.04644 3.27615 3.77350 3.84406 3.98131 4.04651 4.14896 4.30369 4.37584 4.41709 4.43038 4.51706 4.61021 4.69024 4.78216 4.82089 4.92189 4.99781 5.02085 5.09412 5.13705 5.20550 5.28303 5.29907 5.30981 5.52223 5.55836 5.64346 5.67407 5.91214 6.29539 6.37815 6.71554 7.32765 8.86042 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.008620 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.862555 B = 3247.480944 C = 5107.653075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.045 3.955 3 H 0.032 0.968 4 C -0.061 4.061 5 C -0.080 4.080 6 C -0.093 4.093 7 C -0.129 4.129 8 C -0.052 4.052 9 Cl -0.081 7.081 10 C -0.120 4.120 11 C -0.109 4.109 12 N -0.462 5.462 13 C 0.013 3.987 14 C -0.023 4.023 15 C -0.510 4.510 16 H 0.032 0.968 17 C 0.017 3.983 18 N -0.949 5.949 19 Si 0.934 3.066 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.234 1.234 23 C 0.021 3.979 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.265 0.735 37 H 0.080 0.920 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -7.079 17.683 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 H 0.050 0.950 4 C -0.098 4.098 5 C -0.080 4.080 6 C -0.111 4.111 7 C -0.148 4.148 8 C -0.078 4.078 9 Cl -0.053 7.053 10 C -0.138 4.138 11 C -0.127 4.127 12 N -0.185 5.185 13 C -0.117 4.117 14 C -0.042 4.042 15 C -0.549 4.549 16 H 0.050 0.950 17 C -0.180 4.180 18 N -0.589 5.589 19 Si 0.758 3.242 20 H -0.194 1.194 21 H -0.219 1.219 22 H -0.157 1.157 23 C -0.108 4.108 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.565 -7.709 17.771 19.696 hybrid contribution 1.294 0.880 -0.701 1.715 sum -2.271 -6.829 17.070 18.525 Atomic orbital electron populations 1.21797 0.92552 1.02944 1.02329 1.22307 0.96900 0.95477 0.91709 0.94997 1.20628 0.89396 1.02607 0.97183 1.20193 0.97071 0.94319 0.96458 1.21146 0.92388 0.99858 0.97704 1.21200 0.95728 0.98072 0.99796 1.21061 0.84321 0.98749 1.03669 1.98347 1.11458 1.98031 1.97428 1.21226 0.93948 0.98442 1.00210 1.21277 0.93882 0.98164 0.99363 1.68874 1.04078 1.44546 1.00998 1.24133 0.92694 0.97516 0.97312 1.20594 0.94918 0.95897 0.92812 1.21160 1.01718 1.00701 1.31275 0.95018 1.25839 0.99029 0.99231 0.93935 1.70055 1.19717 1.33375 1.35735 0.85917 0.77278 0.80180 0.80793 1.19448 1.21852 1.15672 1.23560 0.98035 0.97010 0.92171 0.93437 0.91307 0.90172 0.88101 0.89484 0.84646 0.84889 0.83769 0.83132 0.94285 0.90811 0.92582 0.92650 0.90140 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.09 71.98 0.65 -2.34 16 2 C 0.05 1.21 1.98 44.92 0.09 1.29 16 3 H 0.03 0.98 7.52 -2.39 -0.02 0.96 16 4 C -0.06 -1.30 5.03 29.85 0.15 -1.15 16 5 C -0.08 -2.01 4.07 -19.86 -0.08 -2.09 16 6 C -0.09 -2.54 6.23 22.27 0.14 -2.40 16 7 C -0.13 -3.67 9.70 22.29 0.22 -3.45 16 8 C -0.05 -1.45 6.32 22.32 0.14 -1.31 16 9 Cl -0.08 -2.19 28.96 -2.72 -0.08 -2.27 16 10 C -0.12 -3.02 9.83 22.29 0.22 -2.80 16 11 C -0.11 -2.57 9.70 22.27 0.22 -2.36 16 12 N -0.46 -15.42 6.04 -902.39 -5.45 -20.87 16 13 C 0.01 0.50 4.45 83.58 0.37 0.87 16 14 C -0.02 -1.05 2.96 -11.19 -0.03 -1.08 16 15 C -0.51 -28.97 9.37 25.60 0.24 -28.73 16 16 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 17 C 0.02 0.99 5.47 84.66 0.46 1.46 16 18 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 19 Si 0.93 44.45 27.14 68.60 1.86 46.31 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 H -0.23 -10.16 5.68 99.48 0.57 -9.59 16 23 C 0.02 0.80 6.01 83.58 0.50 1.31 16 24 H 0.05 1.14 7.03 -2.39 -0.02 1.12 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 28 H 0.09 1.77 8.08 -2.39 -0.02 1.76 16 29 H 0.14 3.58 7.97 -2.91 -0.02 3.56 16 30 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 31 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.04 1.73 7.49 -2.39 -0.02 1.71 16 34 H 0.07 2.92 4.40 -2.39 -0.01 2.91 16 35 H 0.06 2.56 7.04 -2.39 -0.02 2.54 16 36 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.05 1.99 7.61 -2.39 -0.02 1.98 16 Total: -1.00 -64.59 316.40 0.82 -63.78 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.90 Total: 15.18 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.29 Total: -42.78 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -5.15 Total: -80.22 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.86 Total: 46.31 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -64.59 0.82 -63.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168168616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.587 kcal (2) G-P(sol) polarization free energy of solvation -64.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds