Wall clock time and date at job start Tue Mar 31 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 H 1.08994 * 109.47293 * 54.53486 * 3 2 1 5 5 C 1.50699 * 109.46951 * 174.53437 * 3 2 1 6 6 H 1.08008 * 120.00177 * 119.99726 * 5 3 2 7 7 C 1.37877 * 120.00263 * 300.00200 * 5 3 2 8 8 N 1.31518 * 119.99393 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00273 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47002 * 89.99447 * 9 7 5 11 11 H 1.48498 * 109.47071 * 209.99578 * 9 7 5 12 12 H 1.48500 * 109.46970 * 329.99824 * 9 7 5 13 13 N 1.46902 * 109.47008 * 294.53309 * 3 2 1 14 14 C 1.46896 * 110.99927 * 153.18100 * 13 3 2 15 15 H 1.09005 * 110.72934 * 33.15454 * 14 13 3 16 16 C 1.54344 * 110.99429 * 269.62660 * 14 13 3 17 17 C 1.51373 * 105.10941 * 215.14099 * 16 14 13 18 18 C 1.38508 * 130.37935 * 196.75035 * 17 16 14 19 19 C 1.38109 * 120.23964 * 180.35881 * 18 17 16 20 20 C 1.38229 * 119.95280 * 0.27242 * 19 18 17 21 21 C 1.38229 * 119.91910 * 359.97438 * 20 19 18 22 22 Cl 1.73593 * 119.90511 * 180.02562 * 21 20 19 23 23 C 1.38198 * 109.75463 * 17.57922 * 17 16 14 24 24 C 1.51361 * 109.76617 * 359.58952 * 23 17 16 25 25 H 1.08996 * 109.47440 * 300.62771 * 1 2 3 26 26 H 1.08998 * 109.47086 * 60.62878 * 1 2 3 27 27 H 1.09007 * 109.46708 * 180.62559 * 1 2 3 28 28 H 1.08998 * 109.47288 * 239.99663 * 2 1 3 29 29 H 1.08996 * 109.47046 * 119.99833 * 2 1 3 30 30 H 0.97003 * 119.99093 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00130 * 29.22775 * 13 3 2 32 32 H 1.09001 * 110.30245 * 334.28794 * 16 14 13 33 33 H 1.09007 * 110.30231 * 96.33112 * 16 14 13 34 34 H 1.08002 * 119.87954 * 0.62806 * 18 17 16 35 35 H 1.07998 * 120.02506 * 180.24354 * 19 18 17 36 36 H 1.07999 * 120.04137 * 180.02562 * 20 19 18 37 37 H 1.09001 * 110.30334 * 101.99898 * 24 23 17 38 38 H 1.09000 * 110.30494 * 224.05136 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9838 0.8369 5 6 3.5409 1.4447 0.1353 6 1 4.1522 1.8871 -0.6374 7 6 4.1338 0.8817 1.2455 8 7 3.3894 0.3433 2.1866 9 14 5.9943 0.8850 1.4136 10 1 6.4255 2.1200 2.1167 11 1 6.4229 -0.3039 2.1933 12 1 6.6132 0.8418 0.0644 13 7 1.6610 2.0958 -1.2600 14 6 1.5388 3.5490 -1.0835 15 1 2.2539 3.9093 -0.3439 16 6 0.0984 3.9390 -0.6893 17 6 -0.1486 5.2709 -1.3646 18 6 -1.1209 6.2292 -1.1303 19 6 -1.1570 7.3832 -1.8881 20 6 -0.2235 7.5817 -2.8881 21 6 0.7447 6.6246 -3.1273 22 17 1.9172 6.8745 -4.3828 23 6 0.7817 5.4657 -2.3678 24 6 1.7240 4.2827 -2.4287 25 1 -0.3634 0.5235 0.8842 26 1 -0.3633 0.5040 -0.8956 27 1 -0.3633 -1.0277 0.0112 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8066 -0.0524 2.9679 31 1 0.8076 1.7033 -1.6284 32 1 -0.6080 3.1910 -1.0495 33 1 0.0177 4.0441 0.3927 34 1 -1.8509 6.0753 -0.3493 35 1 -1.9142 8.1299 -1.6998 36 1 -0.2502 8.4838 -3.4813 37 1 1.4550 3.6272 -3.2571 38 1 2.7535 4.6242 -2.5364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168699730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:03 Heat of formation + Delta-G solvation = 5.983499 kcal Electronic energy + Delta-G solvation = -19386.059500 eV Core-core repulsion = 16446.265214 eV Total energy + Delta-G solvation = -2939.794286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11867 -37.08763 -36.31487 -34.66949 -31.99854 -31.10145 -30.65664 -27.70006 -27.12151 -25.91263 -22.91571 -21.91754 -21.07425 -20.19986 -19.61396 -16.51648 -16.23149 -15.88318 -15.23185 -15.14304 -14.48307 -14.05149 -13.64686 -13.57410 -13.04318 -12.96981 -12.64809 -12.54012 -11.96151 -11.79628 -11.61251 -11.43498 -11.20943 -11.07493 -11.02976 -10.79721 -10.69705 -10.65270 -10.57225 -9.96293 -9.69950 -9.61280 -9.10443 -8.63025 -8.50084 -8.35629 -7.27915 -5.97267 -4.01196 1.17107 1.27735 2.19835 3.32809 3.39618 3.44533 3.60989 4.44022 4.49690 4.70608 4.86225 5.12206 5.25189 5.30287 5.36770 5.39294 5.58549 5.72938 5.85288 6.01836 6.06447 6.11496 6.13618 6.15740 6.22649 6.30847 6.38317 6.45093 6.61745 6.65152 6.81470 6.82498 7.05918 7.14731 7.48016 7.76552 7.91936 8.27139 8.38228 8.72475 9.07072 9.64089 11.08049 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.004644 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.814146 B = 6028.018860 C = 6794.329461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.102 3.898 15 H 0.095 0.905 16 C -0.114 4.114 17 C -0.074 4.074 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.024 4.024 22 Cl -0.077 7.077 23 C -0.080 4.080 24 C -0.073 4.073 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.259 0.741 31 H 0.320 0.680 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 11.191 -7.836 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.305 5.305 14 C -0.009 4.009 15 H 0.113 0.887 16 C -0.153 4.153 17 C -0.075 4.075 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.137 4.137 21 C -0.050 4.050 22 Cl -0.048 7.048 23 C -0.081 4.081 24 C -0.111 4.111 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.479 11.107 -8.001 16.102 hybrid contribution 0.146 0.171 0.571 0.613 sum -8.333 11.278 -7.430 15.869 Atomic orbital electron populations 1.21892 0.99633 0.99639 0.99600 1.21789 0.91193 1.00431 1.03168 1.19177 0.95471 0.89923 0.84238 0.97749 1.21231 0.91252 1.36417 1.04314 0.91998 1.24949 0.98065 0.95615 0.95864 1.69873 1.34687 1.39528 1.09571 0.86564 0.85854 0.77324 0.78067 1.20900 1.21402 1.19882 1.60695 1.36926 1.00531 1.32373 1.22157 0.93285 0.90366 0.95123 0.88728 1.22026 1.00048 0.92553 1.00636 1.20674 0.94400 0.96417 0.96016 1.20766 0.98316 0.93495 0.99972 1.20920 0.98940 0.97660 0.95777 1.20886 0.94816 0.98683 0.99332 1.20535 0.94367 0.96094 0.94036 1.98355 1.58082 1.96671 1.51741 1.20649 0.98110 0.94513 0.94808 1.21163 0.97827 0.92292 0.99784 0.93846 0.94669 0.94400 0.94029 0.88183 0.93109 0.86135 0.90193 0.90564 0.85836 0.85288 0.85194 0.89479 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.74 37.16 0.36 -2.41 16 2 C -0.13 -2.89 5.35 -26.73 -0.14 -3.03 16 3 C 0.22 5.19 1.90 -68.86 -0.13 5.06 16 4 H 0.00 0.13 7.83 -51.93 -0.41 -0.28 16 5 C -0.49 -13.25 8.64 -34.44 -0.30 -13.55 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.02 11.29 55.43 0.63 -24.39 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.50 6.14 -99.48 -0.61 -14.11 16 14 C 0.10 1.83 3.13 -66.30 -0.21 1.62 16 15 H 0.09 1.92 7.78 -51.93 -0.40 1.52 16 16 C -0.11 -1.74 6.46 -26.85 -0.17 -1.91 16 17 C -0.07 -1.06 6.14 -104.21 -0.64 -1.69 16 18 C -0.11 -1.29 10.04 -39.53 -0.40 -1.69 16 19 C -0.11 -1.22 10.04 -39.63 -0.40 -1.62 16 20 C -0.12 -1.36 9.82 -39.59 -0.39 -1.75 16 21 C -0.02 -0.32 6.32 -39.45 -0.25 -0.57 16 22 Cl -0.08 -0.99 28.71 -51.86 -1.49 -2.48 16 23 C -0.08 -1.17 6.05 -104.17 -0.63 -1.80 16 24 C -0.07 -1.16 6.20 -26.85 -0.17 -1.33 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.58 6.48 -51.93 -0.34 0.24 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.32 5.83 5.89 -39.29 -0.23 5.60 16 32 H 0.08 1.17 7.59 -51.93 -0.39 0.77 16 33 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -27.45 322.73 -10.61 -38.07 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.43 Total: 5.05 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.55 Total: -23.27 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.02 Total: -38.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.49 Total: -2.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.45 -10.61 -38.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168699730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.051 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds