Wall clock time and date at job start Tue Mar 31 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 H 1.08994 * 109.47293 * 54.53486 * 3 2 1 5 5 C 1.50699 * 109.46951 * 174.53437 * 3 2 1 6 6 H 1.08008 * 120.00177 * 119.99726 * 5 3 2 7 7 C 1.37877 * 120.00263 * 300.00200 * 5 3 2 8 8 N 1.31518 * 119.99393 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00273 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47002 * 89.99447 * 9 7 5 11 11 H 1.48498 * 109.47071 * 209.99578 * 9 7 5 12 12 H 1.48500 * 109.46970 * 329.99824 * 9 7 5 13 13 N 1.46902 * 109.47008 * 294.53309 * 3 2 1 14 14 C 1.46896 * 110.99927 * 153.18100 * 13 3 2 15 15 H 1.09005 * 110.72934 * 33.15454 * 14 13 3 16 16 C 1.54344 * 110.99429 * 269.62660 * 14 13 3 17 17 C 1.51373 * 105.10941 * 215.14099 * 16 14 13 18 18 C 1.38508 * 130.37935 * 196.75035 * 17 16 14 19 19 C 1.38109 * 120.23964 * 180.35881 * 18 17 16 20 20 C 1.38229 * 119.95280 * 0.27242 * 19 18 17 21 21 C 1.38229 * 119.91910 * 359.97438 * 20 19 18 22 22 Cl 1.73593 * 119.90511 * 180.02562 * 21 20 19 23 23 C 1.38198 * 109.75463 * 17.57922 * 17 16 14 24 24 C 1.51361 * 109.76617 * 359.58952 * 23 17 16 25 25 H 1.08996 * 109.47440 * 300.62771 * 1 2 3 26 26 H 1.08998 * 109.47086 * 60.62878 * 1 2 3 27 27 H 1.09007 * 109.46708 * 180.62559 * 1 2 3 28 28 H 1.08998 * 109.47288 * 239.99663 * 2 1 3 29 29 H 1.08996 * 109.47046 * 119.99833 * 2 1 3 30 30 H 0.97003 * 119.99093 * 180.02562 * 8 7 5 31 31 H 1.00895 * 111.00130 * 29.22775 * 13 3 2 32 32 H 1.09001 * 110.30245 * 334.28794 * 16 14 13 33 33 H 1.09007 * 110.30231 * 96.33112 * 16 14 13 34 34 H 1.08002 * 119.87954 * 0.62806 * 18 17 16 35 35 H 1.07998 * 120.02506 * 180.24354 * 19 18 17 36 36 H 1.07999 * 120.04137 * 180.02562 * 20 19 18 37 37 H 1.09001 * 110.30334 * 101.99898 * 24 23 17 38 38 H 1.09000 * 110.30494 * 224.05136 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9838 0.8369 5 6 3.5409 1.4447 0.1353 6 1 4.1522 1.8871 -0.6374 7 6 4.1338 0.8817 1.2455 8 7 3.3894 0.3433 2.1866 9 14 5.9943 0.8850 1.4136 10 1 6.4255 2.1200 2.1167 11 1 6.4229 -0.3039 2.1933 12 1 6.6132 0.8418 0.0644 13 7 1.6610 2.0958 -1.2600 14 6 1.5388 3.5490 -1.0835 15 1 2.2539 3.9093 -0.3439 16 6 0.0984 3.9390 -0.6893 17 6 -0.1486 5.2709 -1.3646 18 6 -1.1209 6.2292 -1.1303 19 6 -1.1570 7.3832 -1.8881 20 6 -0.2235 7.5817 -2.8881 21 6 0.7447 6.6246 -3.1273 22 17 1.9172 6.8745 -4.3828 23 6 0.7817 5.4657 -2.3678 24 6 1.7240 4.2827 -2.4287 25 1 -0.3634 0.5235 0.8842 26 1 -0.3633 0.5040 -0.8956 27 1 -0.3633 -1.0277 0.0112 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8066 -0.0524 2.9679 31 1 0.8076 1.7033 -1.6284 32 1 -0.6080 3.1910 -1.0495 33 1 0.0177 4.0441 0.3927 34 1 -1.8509 6.0753 -0.3493 35 1 -1.9142 8.1299 -1.6998 36 1 -0.2502 8.4838 -3.4813 37 1 1.4550 3.6272 -3.2571 38 1 2.7535 4.6242 -2.5364 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168699730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:03 Heat of formation + Delta-G solvation = -7.746043 kcal Electronic energy + Delta-G solvation = -19386.654857 eV Core-core repulsion = 16446.265214 eV Total energy + Delta-G solvation = -2940.389644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22071 -38.51549 -37.39537 -36.13739 -33.93139 -32.15678 -32.11153 -29.19751 -28.27103 -27.63918 -24.68184 -23.04153 -22.08983 -21.61739 -21.39665 -18.28848 -17.52418 -17.16854 -16.75497 -16.19831 -16.13865 -15.58286 -15.01335 -14.77746 -14.56198 -14.18014 -14.02353 -13.83589 -13.56474 -13.26088 -12.98587 -12.85656 -12.61873 -12.57645 -12.46665 -12.39928 -12.05769 -11.94987 -11.91434 -11.71717 -11.51298 -11.34770 -11.01786 -10.41808 -9.60260 -9.54746 -8.98124 -8.05447 -6.16606 0.20155 0.30028 1.20489 1.40805 1.42516 1.52764 2.44751 2.64394 3.19412 3.33466 3.52045 3.80616 3.98492 4.12614 4.20520 4.34241 4.46541 4.53092 4.54992 4.59319 4.72473 4.73971 4.81612 4.86616 4.94656 5.08203 5.16251 5.20341 5.26084 5.28861 5.39273 5.40973 5.58118 5.63732 5.77956 5.88206 5.92863 6.38675 6.53730 6.97065 7.01702 7.52411 8.97361 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.004644 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.814146 B = 6028.018860 C = 6794.329461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.228 3.772 4 H -0.024 1.024 5 C -0.511 4.511 6 H 0.047 0.953 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.099 3.901 15 H 0.060 0.940 16 C -0.102 4.102 17 C -0.090 4.090 18 C -0.108 4.108 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.036 4.036 22 Cl -0.079 7.079 23 C -0.100 4.100 24 C -0.062 4.062 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.260 0.740 31 H 0.332 0.668 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 12.686 -8.604 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.120 3.880 4 H -0.007 1.007 5 C -0.550 4.550 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.308 5.308 14 C -0.012 4.012 15 H 0.078 0.922 16 C -0.141 4.141 17 C -0.090 4.090 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.134 4.134 21 C -0.063 4.063 22 Cl -0.050 7.050 23 C -0.101 4.101 24 C -0.100 4.100 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.163 0.837 35 H 0.185 0.815 36 H 0.173 0.827 37 H 0.105 0.895 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.092 12.612 -8.783 18.386 hybrid contribution 0.620 -0.216 0.789 1.026 sum -9.472 12.396 -7.994 17.530 Atomic orbital electron populations 1.21754 0.96142 1.01204 1.00523 1.21614 0.94338 0.99019 1.01206 1.18900 0.93746 0.90588 0.84758 1.00653 1.21502 0.93064 1.36345 1.04109 0.93472 1.25613 1.01913 0.95414 0.95670 1.69992 1.36049 1.39965 1.09837 0.85674 0.81295 0.77425 0.77930 1.20533 1.20796 1.19780 1.60560 1.37915 1.01770 1.30518 1.22035 0.94465 0.89053 0.95655 0.92173 1.21788 0.98049 0.93978 1.00317 1.20621 0.95671 0.96491 0.96253 1.21075 0.97835 0.93171 1.00477 1.21367 0.98891 0.97561 0.94235 1.21269 0.93848 0.98796 0.99443 1.20716 0.95131 0.96247 0.94160 1.98352 1.58308 1.96620 1.51710 1.20515 0.98444 0.94851 0.96270 1.20937 0.97765 0.92968 0.98341 0.94240 0.92390 0.92485 0.94599 0.91404 0.93120 0.84837 0.89305 0.91299 0.83688 0.81499 0.82686 0.89487 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.74 71.98 0.70 -4.29 16 2 C -0.12 -5.69 5.35 30.60 0.16 -5.52 16 3 C 0.23 11.19 1.90 44.17 0.08 11.27 16 4 H -0.02 -1.30 7.83 -2.39 -0.02 -1.32 16 5 C -0.51 -28.45 8.64 25.60 0.22 -28.23 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 7 C 0.01 0.67 5.29 84.65 0.45 1.12 16 8 N -0.92 -52.51 11.29 21.45 0.24 -52.27 16 9 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 N -0.68 -27.69 6.14 -468.65 -2.88 -30.57 16 14 C 0.10 3.66 3.13 45.83 0.14 3.81 16 15 H 0.06 2.61 7.78 -2.38 -0.02 2.59 16 16 C -0.10 -3.12 6.46 30.52 0.20 -2.93 16 17 C -0.09 -2.43 6.14 -19.60 -0.12 -2.55 16 18 C -0.11 -2.26 10.04 22.30 0.22 -2.04 16 19 C -0.10 -1.77 10.04 22.24 0.22 -1.54 16 20 C -0.12 -2.26 9.82 22.27 0.22 -2.04 16 21 C -0.04 -0.91 6.32 22.36 0.14 -0.77 16 22 Cl -0.08 -1.94 28.71 -2.72 -0.08 -2.02 16 23 C -0.10 -2.87 6.05 -19.57 -0.12 -2.99 16 24 C -0.06 -2.03 6.20 30.52 0.19 -1.84 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.80 6.48 -2.39 -0.02 1.79 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 3.59 5.94 -2.39 -0.01 3.58 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.33 12.01 5.89 -89.70 -0.53 11.48 16 32 H 0.09 2.51 7.59 -2.39 -0.02 2.49 16 33 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.09 2.77 8.08 -2.39 -0.02 2.75 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -60.79 322.73 2.56 -58.24 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.53 Total: 18.65 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 2.72 Total: -38.56 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -2.64 Total: -82.84 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.02 kcal Total: -60.79 2.56 -58.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168699730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.492 kcal (2) G-P(sol) polarization free energy of solvation -60.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds