Wall clock time and date at job start Tue Mar 31 2020 00:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 H 1.09004 * 109.47136 * 305.69230 * 3 2 1 5 5 C 1.50698 * 109.47038 * 185.69617 * 3 2 1 6 6 H 1.08005 * 120.00238 * 240.00107 * 5 3 2 7 7 C 1.37883 * 120.00148 * 59.99552 * 5 3 2 8 8 N 1.31507 * 119.99684 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99857 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46900 * 90.00660 * 9 7 5 11 11 H 1.48500 * 109.47155 * 210.00467 * 9 7 5 12 12 H 1.48495 * 109.47703 * 330.00550 * 9 7 5 13 13 N 1.46900 * 109.47055 * 65.69611 * 3 2 1 14 14 C 1.46897 * 110.99979 * 260.32348 * 13 3 2 15 15 H 1.08996 * 110.72940 * 33.76642 * 14 13 3 16 16 C 1.54348 * 110.82587 * 270.14366 * 14 13 3 17 17 C 1.51367 * 105.10517 * 215.21889 * 16 14 13 18 18 C 1.38508 * 130.38052 * 196.74294 * 17 16 14 19 19 C 1.38105 * 120.24683 * 180.35784 * 18 17 16 20 20 C 1.38232 * 119.95028 * 0.27597 * 19 18 17 21 21 C 1.38231 * 119.91774 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 119.90716 * 180.02562 * 21 20 19 23 23 C 1.38202 * 109.76098 * 17.57575 * 17 16 14 24 24 C 1.51365 * 109.76154 * 359.59148 * 23 17 16 25 25 H 1.09003 * 109.47058 * 57.07054 * 1 2 3 26 26 H 1.09006 * 109.46919 * 177.06187 * 1 2 3 27 27 H 1.08995 * 109.47157 * 297.06571 * 1 2 3 28 28 H 1.09001 * 109.47485 * 239.99690 * 2 1 3 29 29 H 1.08995 * 109.46880 * 120.00029 * 2 1 3 30 30 H 0.97004 * 119.99847 * 179.97438 * 8 7 5 31 31 H 1.00907 * 110.99830 * 136.37122 * 13 3 2 32 32 H 1.09004 * 110.29882 * 334.35977 * 16 14 13 33 33 H 1.09000 * 110.30370 * 96.40910 * 16 14 13 34 34 H 1.07999 * 119.87661 * 0.63963 * 18 17 16 35 35 H 1.07999 * 120.03292 * 180.25119 * 19 18 17 36 36 H 1.07996 * 120.04332 * 180.02562 * 20 19 18 37 37 H 1.09000 * 110.30532 * 102.00114 * 24 23 17 38 38 H 1.09000 * 110.29998 * 224.05331 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5403 1.4448 -0.1410 6 1 4.1546 1.8863 0.6299 7 6 4.1291 0.8833 -1.2542 8 7 3.3812 0.3462 -2.1932 9 14 5.9888 0.8869 -1.4293 10 1 6.5458 -0.3470 -0.8190 11 1 6.3504 0.9339 -2.8688 12 1 6.5488 2.0766 -0.7393 13 7 1.6657 2.0941 1.2622 14 6 0.4723 2.9327 1.0882 15 1 -0.2038 2.4939 0.3544 16 6 0.8655 4.3704 0.6874 17 6 -0.1534 5.2614 1.3651 18 6 -0.4867 6.5848 1.1284 19 6 -1.4589 7.2041 1.8889 20 6 -2.0989 6.5037 2.8943 21 6 -1.7645 5.1844 3.1359 22 17 -2.5689 4.3049 4.3981 23 6 -0.7886 4.5619 2.3736 24 6 -0.2472 3.1497 2.4363 25 1 -0.3633 0.5587 -0.8626 26 1 -0.3633 -1.0264 -0.0527 27 1 -0.3633 0.4676 0.9151 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7953 -0.0485 -2.9765 31 1 2.4346 2.6320 1.6333 32 1 1.8702 4.6005 1.0421 33 1 0.8105 4.4899 -0.3946 34 1 0.0125 7.1331 0.3431 35 1 -1.7189 8.2350 1.6987 36 1 -2.8597 6.9864 3.4896 37 1 0.4580 3.0513 3.2615 38 1 -1.0636 2.4365 2.5501 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168699732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:14 Heat of formation + Delta-G solvation = 4.121447 kcal Electronic energy + Delta-G solvation = -19411.154293 eV Core-core repulsion = 16471.279262 eV Total energy + Delta-G solvation = -2939.875031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13827 -37.09946 -36.33177 -34.57097 -32.00843 -31.12279 -30.53040 -28.03344 -27.10479 -25.72770 -22.85863 -21.91133 -21.07489 -20.25746 -19.48470 -16.72856 -16.51593 -15.67963 -15.22072 -15.14913 -14.52645 -13.94843 -13.63427 -13.41503 -12.99136 -12.88926 -12.59864 -12.36125 -12.17280 -11.69421 -11.64909 -11.45043 -11.21151 -11.07997 -11.06832 -10.79914 -10.75189 -10.69525 -10.62457 -10.12749 -9.68696 -9.44750 -8.86277 -8.64007 -8.51733 -8.46675 -7.31232 -6.05817 -4.13748 1.16191 1.26706 2.17062 3.26951 3.34011 3.36175 3.60274 4.35979 4.47741 4.70620 4.86032 5.11986 5.23313 5.24801 5.35152 5.38021 5.57305 5.71686 5.84619 6.02968 6.06677 6.10837 6.21695 6.29916 6.34286 6.40233 6.42095 6.54922 6.61234 6.63087 6.81573 7.05355 7.13400 7.42718 7.55257 7.74299 7.91610 8.23949 8.35422 8.62705 8.98244 9.52524 10.98927 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.004253 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.389443 B = 6581.610587 C = 7193.968402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.218 3.782 4 H 0.010 0.990 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.095 3.905 15 H 0.088 0.912 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.024 4.024 22 Cl -0.078 7.078 23 C -0.082 4.082 24 C -0.073 4.073 25 H 0.035 0.965 26 H 0.028 0.972 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.037 0.963 30 H 0.261 0.739 31 H 0.334 0.666 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.954 10.739 7.753 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C 0.111 3.889 4 H 0.028 0.972 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.307 5.307 14 C -0.017 4.017 15 H 0.106 0.894 16 C -0.151 4.151 17 C -0.074 4.074 18 C -0.126 4.126 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.050 4.050 22 Cl -0.050 7.050 23 C -0.083 4.083 24 C -0.111 4.111 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.107 0.893 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.343 9.983 7.906 16.406 hybrid contribution 1.221 0.769 -0.555 1.546 sum -9.121 10.753 7.351 15.902 Atomic orbital electron populations 1.21846 0.99665 0.98864 0.99773 1.21548 0.91475 0.99596 1.01902 1.19137 0.94279 0.91148 0.84374 0.97201 1.21416 0.91518 1.38543 1.05062 0.92362 1.24903 0.98102 0.95049 0.95679 1.69885 1.34797 1.38428 1.09323 0.86574 0.85656 0.78474 0.77142 1.20608 1.21288 1.19991 1.60739 1.06032 1.32311 1.31640 1.22324 0.94682 0.89900 0.94785 0.89416 1.22017 0.97109 0.95315 1.00698 1.20733 0.97036 0.93696 0.95930 1.20785 0.97851 0.93914 1.00005 1.20930 0.96732 0.99866 0.95677 1.20882 1.01244 0.92350 0.99327 1.20528 0.97588 0.93049 0.93845 1.98353 1.78905 1.76362 1.51335 1.20620 0.94708 0.98072 0.94933 1.21160 0.99739 0.90312 0.99860 0.94563 0.95275 0.93690 0.89270 0.94437 0.92878 0.84745 0.89613 0.90521 0.85768 0.85274 0.85202 0.89311 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.68 37.16 0.32 -2.58 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.17 2.13 -68.87 -0.15 5.03 16 4 H 0.01 0.27 7.58 -51.93 -0.39 -0.13 16 5 C -0.53 -13.76 8.60 -34.44 -0.30 -14.05 16 6 H 0.06 1.50 7.42 -52.48 -0.39 1.11 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.68 -13.43 5.96 -99.48 -0.59 -14.02 16 14 C 0.09 1.62 2.29 -66.30 -0.15 1.46 16 15 H 0.09 1.60 6.22 -51.93 -0.32 1.28 16 16 C -0.11 -1.76 6.45 -26.85 -0.17 -1.93 16 17 C -0.07 -1.04 6.14 -104.21 -0.64 -1.68 16 18 C -0.11 -1.30 10.04 -39.53 -0.40 -1.70 16 19 C -0.11 -1.21 10.04 -39.63 -0.40 -1.61 16 20 C -0.12 -1.35 9.83 -39.59 -0.39 -1.74 16 21 C -0.02 -0.31 6.32 -39.45 -0.25 -0.56 16 22 Cl -0.08 -0.97 28.71 -51.86 -1.49 -2.46 16 23 C -0.08 -1.18 6.05 -104.17 -0.63 -1.81 16 24 C -0.07 -1.11 6.20 -26.85 -0.17 -1.27 16 25 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.85 6.80 -51.93 -0.35 0.50 16 28 H 0.09 2.36 5.94 -51.93 -0.31 2.05 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.33 6.55 7.32 -39.29 -0.29 6.26 16 32 H 0.09 1.35 7.59 -51.93 -0.39 0.96 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -26.81 320.34 -10.58 -37.39 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.38 Total: 5.95 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -3.55 Total: -23.46 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.03 Total: -37.91 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.49 Total: -2.46 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.81 -10.58 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168699732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.516 kcal (2) G-P(sol) polarization free energy of solvation -26.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds