Wall clock time and date at job start Tue Mar 31 2020 00:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 H 1.09004 * 109.47136 * 305.69230 * 3 2 1 5 5 C 1.50698 * 109.47038 * 185.69617 * 3 2 1 6 6 H 1.08005 * 120.00238 * 240.00107 * 5 3 2 7 7 C 1.37883 * 120.00148 * 59.99552 * 5 3 2 8 8 N 1.31507 * 119.99684 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99857 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46900 * 90.00660 * 9 7 5 11 11 H 1.48500 * 109.47155 * 210.00467 * 9 7 5 12 12 H 1.48495 * 109.47703 * 330.00550 * 9 7 5 13 13 N 1.46900 * 109.47055 * 65.69611 * 3 2 1 14 14 C 1.46897 * 110.99979 * 260.32348 * 13 3 2 15 15 H 1.08996 * 110.72940 * 33.76642 * 14 13 3 16 16 C 1.54348 * 110.82587 * 270.14366 * 14 13 3 17 17 C 1.51367 * 105.10517 * 215.21889 * 16 14 13 18 18 C 1.38508 * 130.38052 * 196.74294 * 17 16 14 19 19 C 1.38105 * 120.24683 * 180.35784 * 18 17 16 20 20 C 1.38232 * 119.95028 * 0.27597 * 19 18 17 21 21 C 1.38231 * 119.91774 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 119.90716 * 180.02562 * 21 20 19 23 23 C 1.38202 * 109.76098 * 17.57575 * 17 16 14 24 24 C 1.51365 * 109.76154 * 359.59148 * 23 17 16 25 25 H 1.09003 * 109.47058 * 57.07054 * 1 2 3 26 26 H 1.09006 * 109.46919 * 177.06187 * 1 2 3 27 27 H 1.08995 * 109.47157 * 297.06571 * 1 2 3 28 28 H 1.09001 * 109.47485 * 239.99690 * 2 1 3 29 29 H 1.08995 * 109.46880 * 120.00029 * 2 1 3 30 30 H 0.97004 * 119.99847 * 179.97438 * 8 7 5 31 31 H 1.00907 * 110.99830 * 136.37122 * 13 3 2 32 32 H 1.09004 * 110.29882 * 334.35977 * 16 14 13 33 33 H 1.09000 * 110.30370 * 96.40910 * 16 14 13 34 34 H 1.07999 * 119.87661 * 0.63963 * 18 17 16 35 35 H 1.07999 * 120.03292 * 180.25119 * 19 18 17 36 36 H 1.07996 * 120.04332 * 180.02562 * 20 19 18 37 37 H 1.09000 * 110.30532 * 102.00114 * 24 23 17 38 38 H 1.09000 * 110.29998 * 224.05331 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5403 1.4448 -0.1410 6 1 4.1546 1.8863 0.6299 7 6 4.1291 0.8833 -1.2542 8 7 3.3812 0.3462 -2.1932 9 14 5.9888 0.8869 -1.4293 10 1 6.5458 -0.3470 -0.8190 11 1 6.3504 0.9339 -2.8688 12 1 6.5488 2.0766 -0.7393 13 7 1.6657 2.0941 1.2622 14 6 0.4723 2.9327 1.0882 15 1 -0.2038 2.4939 0.3544 16 6 0.8655 4.3704 0.6874 17 6 -0.1534 5.2614 1.3651 18 6 -0.4867 6.5848 1.1284 19 6 -1.4589 7.2041 1.8889 20 6 -2.0989 6.5037 2.8943 21 6 -1.7645 5.1844 3.1359 22 17 -2.5689 4.3049 4.3981 23 6 -0.7886 4.5619 2.3736 24 6 -0.2472 3.1497 2.4363 25 1 -0.3633 0.5587 -0.8626 26 1 -0.3633 -1.0264 -0.0527 27 1 -0.3633 0.4676 0.9151 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7953 -0.0485 -2.9765 31 1 2.4346 2.6320 1.6333 32 1 1.8702 4.6005 1.0421 33 1 0.8105 4.4899 -0.3946 34 1 0.0125 7.1331 0.3431 35 1 -1.7189 8.2350 1.6987 36 1 -2.8597 6.9864 3.4896 37 1 0.4580 3.0513 3.2615 38 1 -1.0636 2.4365 2.5501 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168699732.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:13 Heat of formation + Delta-G solvation = -8.899741 kcal Electronic energy + Delta-G solvation = -19411.718934 eV Core-core repulsion = 16471.279262 eV Total energy + Delta-G solvation = -2940.439672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22667 -38.49820 -37.38216 -36.07018 -33.86380 -32.21648 -32.04578 -29.51778 -28.24550 -27.40604 -24.65991 -23.03162 -22.08374 -21.60026 -21.34246 -18.60065 -17.51157 -17.12925 -16.60887 -16.19384 -16.14552 -15.50897 -14.88256 -14.74204 -14.29204 -14.21542 -14.00405 -13.76028 -13.73229 -13.35118 -13.08945 -12.79304 -12.62445 -12.54325 -12.51988 -12.35903 -12.10602 -11.98907 -11.90149 -11.71162 -11.52617 -11.23570 -10.81700 -10.49123 -9.60333 -9.54702 -8.99254 -8.09503 -6.24280 0.19994 0.29975 1.20323 1.42391 1.44117 1.52885 2.42596 2.64236 3.17342 3.33183 3.53313 3.83297 3.99000 4.11958 4.20207 4.31906 4.46144 4.53416 4.62535 4.70757 4.75635 4.81045 4.86019 4.87896 4.94283 5.10739 5.15405 5.21202 5.25896 5.36316 5.41064 5.54699 5.58553 5.68294 5.73857 5.87632 5.96242 6.30882 6.50231 6.81487 7.06068 7.45942 8.94060 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.004253 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.389443 B = 6581.610587 C = 7193.968402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C 0.227 3.773 4 H -0.020 1.020 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.674 5.674 14 C 0.093 3.907 15 H 0.073 0.927 16 C -0.106 4.106 17 C -0.090 4.090 18 C -0.110 4.110 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.035 4.035 22 Cl -0.076 7.076 23 C -0.099 4.099 24 C -0.062 4.062 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.335 0.665 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 12.582 8.706 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C 0.119 3.881 4 H -0.002 1.002 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.781 3.219 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.303 5.303 14 C -0.018 4.018 15 H 0.092 0.908 16 C -0.144 4.144 17 C -0.091 4.091 18 C -0.128 4.128 19 C -0.121 4.121 20 C -0.133 4.133 21 C -0.061 4.061 22 Cl -0.047 7.047 23 C -0.100 4.100 24 C -0.099 4.099 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.104 0.896 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.064 11.838 8.877 18.476 hybrid contribution 1.381 0.258 -0.830 1.632 sum -9.683 12.097 8.047 17.460 Atomic orbital electron populations 1.21697 0.96973 1.00040 1.00176 1.21409 0.93899 0.98991 0.99903 1.18879 0.93058 0.91248 0.84934 1.00190 1.21775 0.92915 1.38317 1.05112 0.92375 1.25648 1.02239 0.94807 0.95484 1.70018 1.36399 1.39116 1.09719 0.85598 0.80679 0.78555 0.77021 1.20385 1.21110 1.19249 1.60661 1.06816 1.33316 1.29522 1.22273 0.93321 0.90292 0.95916 0.90839 1.21806 0.97596 0.94876 1.00167 1.20631 0.97295 0.94756 0.96410 1.21068 0.98168 0.93051 1.00563 1.21350 0.95154 1.01297 0.94266 1.21268 1.01264 0.91495 0.99320 1.20690 0.97522 0.93922 0.93971 1.98352 1.78729 1.76511 1.51124 1.20519 0.95960 0.97466 0.96039 1.20951 0.99354 0.91462 0.98171 0.94937 0.93587 0.92523 0.92220 0.95285 0.92963 0.84685 0.90160 0.91606 0.84113 0.81633 0.82630 0.89646 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.68 71.98 0.62 -4.68 16 2 C -0.10 -5.00 5.45 30.59 0.17 -4.83 16 3 C 0.23 11.11 2.13 44.17 0.09 11.21 16 4 H -0.02 -1.06 7.58 -2.39 -0.02 -1.08 16 5 C -0.54 -28.93 8.60 25.60 0.22 -28.71 16 6 H 0.06 3.03 7.42 -2.91 -0.02 3.00 16 7 C 0.02 0.97 5.29 84.66 0.45 1.41 16 8 N -0.91 -51.77 11.29 21.45 0.24 -51.53 16 9 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 N -0.67 -27.31 5.96 -468.65 -2.79 -30.10 16 14 C 0.09 3.24 2.29 45.83 0.10 3.34 16 15 H 0.07 2.76 6.22 -2.39 -0.01 2.75 16 16 C -0.11 -3.35 6.45 30.52 0.20 -3.16 16 17 C -0.09 -2.48 6.14 -19.60 -0.12 -2.60 16 18 C -0.11 -2.41 10.04 22.30 0.22 -2.18 16 19 C -0.10 -1.80 10.04 22.24 0.22 -1.57 16 20 C -0.12 -2.21 9.83 22.27 0.22 -1.99 16 21 C -0.03 -0.84 6.32 22.36 0.14 -0.70 16 22 Cl -0.08 -1.76 28.71 -2.72 -0.08 -1.83 16 23 C -0.10 -2.74 6.05 -19.57 -0.12 -2.86 16 24 C -0.06 -1.86 6.20 30.52 0.19 -1.67 16 25 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 26 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.06 2.13 6.80 -2.39 -0.02 2.11 16 28 H 0.06 3.26 5.94 -2.39 -0.01 3.24 16 29 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.33 13.40 7.32 -89.69 -0.66 12.75 16 32 H 0.08 2.58 7.59 -2.39 -0.02 2.57 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.09 2.60 8.08 -2.39 -0.02 2.58 16 38 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -58.10 320.34 2.42 -55.68 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.40 Total: 21.93 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 2.61 Total: -38.99 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -2.55 Total: -81.63 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.83 kcal Total: -58.10 2.42 -55.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168699732.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.779 kcal (2) G-P(sol) polarization free energy of solvation -58.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds