Wall clock time and date at job start Tue Mar 31 2020 01:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47170 * 2 1 4 4 C 1.46901 * 110.99896 * 195.74251 * 3 2 1 5 5 C 1.50698 * 109.47106 * 76.31013 * 4 3 2 6 6 H 1.07993 * 120.00251 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99675 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99468 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00338 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47353 * 270.00084 * 9 7 5 11 11 H 1.48501 * 109.47124 * 30.00307 * 9 7 5 12 12 H 1.48505 * 109.47385 * 149.99974 * 9 7 5 13 13 C 1.46899 * 110.99701 * 71.78981 * 3 2 1 14 14 H 1.08998 * 110.73469 * 310.65542 * 13 3 2 15 15 C 1.54353 * 110.82151 * 187.03491 * 13 3 2 16 16 C 1.51372 * 105.16883 * 215.43289 * 15 13 3 17 17 C 1.38514 * 130.37983 * 197.17093 * 16 15 13 18 18 C 1.38105 * 120.24371 * 180.02562 * 17 16 15 19 19 C 1.38241 * 119.94603 * 359.97438 * 18 17 16 20 20 C 1.38217 * 119.92164 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 119.90294 * 180.02562 * 20 19 18 22 22 C 1.38195 * 109.76320 * 17.19208 * 16 15 13 23 23 C 1.51374 * 109.76146 * 359.97438 * 22 16 15 24 24 H 1.09000 * 109.47426 * 174.28951 * 1 2 3 25 25 H 1.09000 * 109.47290 * 294.29542 * 1 2 3 26 26 H 1.09000 * 109.47260 * 54.29107 * 1 2 3 27 27 H 1.08996 * 109.46983 * 240.00375 * 2 1 3 28 28 H 1.08998 * 109.46939 * 119.99866 * 2 1 3 29 29 H 1.09000 * 109.47230 * 316.30951 * 4 3 2 30 30 H 1.09006 * 109.46758 * 196.31319 * 4 3 2 31 31 H 0.97006 * 119.99843 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.30062 * 334.35497 * 15 13 3 33 33 H 1.08997 * 110.30555 * 96.50744 * 15 13 3 34 34 H 1.07994 * 119.87673 * 0.02562 * 17 16 15 35 35 H 1.07994 * 120.02564 * 179.97438 * 18 17 16 36 36 H 1.08007 * 120.03581 * 180.02562 * 19 18 17 37 37 H 1.09001 * 110.30074 * 223.89772 * 23 22 16 38 38 H 1.08998 * 110.30078 * 101.74664 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4396 1.4413 -0.3721 5 6 3.5768 1.2507 -1.8607 6 1 2.6971 1.1031 -2.4695 7 6 4.8253 1.2660 -2.4454 8 7 4.9449 1.1003 -3.7446 9 14 6.3468 1.5222 -1.3925 10 1 6.6459 2.9738 -1.2996 11 1 6.1045 0.9786 -0.0320 12 1 7.4997 0.8177 -2.0089 13 6 1.7910 2.0241 1.3028 14 1 0.7616 1.8771 1.6294 15 6 2.1442 3.5256 1.2467 16 6 2.7291 3.8459 2.6057 17 6 2.9249 5.0649 3.2337 18 6 3.4855 5.1155 4.4948 19 6 3.8526 3.9462 5.1343 20 6 3.6574 2.7285 4.5101 21 17 4.1180 1.2603 5.3139 22 6 3.0962 2.6764 3.2438 23 6 2.7826 1.4898 2.3578 24 1 -0.3634 -1.0225 -0.1023 25 1 -0.3634 0.4228 0.9366 26 1 -0.3634 0.5998 -0.8344 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9828 0.6515 0.1469 30 1 3.8509 2.4107 -0.0904 31 1 5.8233 1.1114 -4.1562 32 1 2.8802 3.7121 0.4647 33 1 1.2468 4.1190 1.0719 34 1 2.6381 5.9790 2.7353 35 1 3.6369 6.0679 4.9810 36 1 4.2908 3.9841 6.1207 37 1 2.3213 0.6933 2.9417 38 1 3.6903 1.1284 1.8745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168736713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:39 Heat of formation + Delta-G solvation = 21.837712 kcal Electronic energy + Delta-G solvation = -19792.916275 eV Core-core repulsion = 16853.809480 eV Total energy + Delta-G solvation = -2939.106796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.33957 -37.69568 -36.40609 -34.11062 -32.55267 -31.13503 -30.28575 -28.54253 -27.22384 -26.17976 -22.64979 -22.17009 -21.48243 -21.00919 -18.75665 -17.12561 -16.46153 -15.92376 -15.27402 -15.24097 -14.56543 -14.18062 -13.73637 -13.68704 -13.29580 -13.08013 -12.99537 -12.60119 -12.43752 -11.96887 -11.68704 -11.55525 -11.23487 -11.22894 -11.06318 -11.04368 -10.89536 -10.73522 -10.53331 -10.34690 -10.01204 -9.89077 -9.31686 -8.64692 -8.57033 -8.48726 -7.40492 -6.06200 -4.02887 1.15996 1.26347 2.16548 3.26827 3.34857 3.37322 3.60013 4.36791 4.40702 4.52551 4.82446 5.00402 5.12953 5.25268 5.25609 5.30545 5.37644 5.49733 5.69545 5.80521 5.84615 5.90071 6.00603 6.00957 6.04628 6.18699 6.23727 6.27952 6.33508 6.47101 6.56660 6.62010 6.66644 6.81199 6.86240 6.95431 7.62123 7.86950 8.01729 8.64775 9.04951 9.55997 11.06992 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015308 B = 0.006102 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.630850 B = 4587.879842 C = 5092.117697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.513 5.513 4 C 0.157 3.843 5 C -0.505 4.505 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.868 3.132 10 H -0.276 1.276 11 H -0.268 1.268 12 H -0.286 1.286 13 C 0.087 3.913 14 H 0.088 0.912 15 C -0.082 4.082 16 C -0.074 4.074 17 C -0.106 4.106 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.024 4.024 21 Cl -0.079 7.079 22 C -0.079 4.079 23 C -0.122 4.122 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.022 0.978 29 H -0.007 1.007 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 4.735 17.163 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.236 5.236 4 C 0.031 3.969 5 C -0.544 4.544 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.695 3.305 10 H -0.201 1.201 11 H -0.192 1.192 12 H -0.211 1.211 13 C -0.023 4.023 14 H 0.106 0.894 15 C -0.119 4.119 16 C -0.075 4.075 17 C -0.124 4.124 18 C -0.131 4.131 19 C -0.138 4.138 20 C -0.050 4.050 21 Cl -0.051 7.051 22 C -0.080 4.080 23 C -0.161 4.161 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.040 0.960 29 H 0.011 0.989 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.162 4.829 16.699 18.133 hybrid contribution 1.602 -0.398 1.287 2.093 sum -3.560 4.432 17.986 18.863 Atomic orbital electron populations 1.21787 0.96196 1.00716 1.01493 1.21988 0.94648 0.89597 1.01047 1.62124 1.21229 1.16517 1.23702 1.20285 0.83613 0.95588 0.97433 1.21024 0.94362 1.48731 0.90253 0.90035 1.24876 0.98565 0.95013 0.94723 1.69891 1.23831 1.50602 1.09530 0.86978 0.83542 0.78785 0.81202 1.20133 1.19243 1.21143 1.22427 0.97844 0.93347 0.88692 0.89409 1.21262 1.01441 0.96303 0.92855 1.20763 0.97776 0.92343 0.96629 1.20746 0.99529 0.97155 0.94938 1.20936 0.99390 0.97675 0.95084 1.20881 1.01805 0.90586 1.00502 1.20545 1.03469 0.87503 0.93520 1.98351 1.91045 1.36162 1.79499 1.20463 0.97760 0.97403 0.92422 1.21978 1.02087 0.95455 0.96582 0.93163 0.93798 0.91836 0.89497 0.95989 0.98948 0.95521 0.92683 0.87927 0.90195 0.85548 0.85168 0.85164 0.90859 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.87 37.16 0.37 -1.76 16 2 C 0.06 0.99 5.43 -3.83 -0.02 0.97 16 3 N -0.51 -10.09 4.39 -226.40 -0.99 -11.08 16 4 C 0.16 3.63 2.42 -4.98 -0.01 3.62 16 5 C -0.51 -13.99 9.11 -34.44 -0.31 -14.30 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 9 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.09 1.42 3.02 -66.31 -0.20 1.22 16 14 H 0.09 1.31 6.58 -51.93 -0.34 0.97 16 15 C -0.08 -1.27 6.19 -26.84 -0.17 -1.44 16 16 C -0.07 -1.09 6.14 -104.21 -0.64 -1.73 16 17 C -0.11 -1.30 10.04 -39.53 -0.40 -1.69 16 18 C -0.11 -1.24 10.04 -39.63 -0.40 -1.64 16 19 C -0.12 -1.42 9.82 -39.59 -0.39 -1.81 16 20 C -0.02 -0.34 6.32 -39.45 -0.25 -0.59 16 21 Cl -0.08 -1.07 28.71 -51.86 -1.49 -2.56 16 22 C -0.08 -1.22 6.05 -104.17 -0.63 -1.85 16 23 C -0.12 -1.99 5.12 -26.85 -0.14 -2.13 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.58 6.83 -51.93 -0.35 0.23 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.09 1.77 7.37 -51.93 -0.38 1.39 16 28 H 0.02 0.37 7.40 -51.93 -0.38 -0.01 16 29 H -0.01 -0.17 5.81 -51.93 -0.30 -0.47 16 30 H 0.03 0.63 5.23 -51.93 -0.27 0.36 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.10 1.84 5.99 -51.93 -0.31 1.53 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.77 5.66 -51.93 -0.29 1.48 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -29.59 314.31 -10.12 -39.71 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.19 Total: 0.17 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -3.28 Total: -21.23 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.22 Total: -37.59 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.49 Total: -2.56 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.59 -10.12 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168736713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.547 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds