Wall clock time and date at job start Tue Mar 31 2020 01:33:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46899 * 109.47170 * 2 1
4 4 C 1.46901 * 110.99896 * 195.74251 * 3 2 1
5 5 C 1.50698 * 109.47106 * 76.31013 * 4 3 2
6 6 H 1.07993 * 120.00251 * 0.02562 * 5 4 3
7 7 C 1.37877 * 119.99675 * 179.97438 * 5 4 3
8 8 N 1.31518 * 119.99468 * 180.02562 * 7 5 4
9 9 Si 1.86794 * 120.00338 * 0.02562 * 7 5 4
10 10 H 1.48499 * 109.47353 * 270.00084 * 9 7 5
11 11 H 1.48501 * 109.47124 * 30.00307 * 9 7 5
12 12 H 1.48505 * 109.47385 * 149.99974 * 9 7 5
13 13 C 1.46899 * 110.99701 * 71.78981 * 3 2 1
14 14 H 1.08998 * 110.73469 * 310.65542 * 13 3 2
15 15 C 1.54353 * 110.82151 * 187.03491 * 13 3 2
16 16 C 1.51372 * 105.16883 * 215.43289 * 15 13 3
17 17 C 1.38514 * 130.37983 * 197.17093 * 16 15 13
18 18 C 1.38105 * 120.24371 * 180.02562 * 17 16 15
19 19 C 1.38241 * 119.94603 * 359.97438 * 18 17 16
20 20 C 1.38217 * 119.92164 * 359.97438 * 19 18 17
21 21 Cl 1.73599 * 119.90294 * 180.02562 * 20 19 18
22 22 C 1.38195 * 109.76320 * 17.19208 * 16 15 13
23 23 C 1.51374 * 109.76146 * 359.97438 * 22 16 15
24 24 H 1.09000 * 109.47426 * 174.28951 * 1 2 3
25 25 H 1.09000 * 109.47290 * 294.29542 * 1 2 3
26 26 H 1.09000 * 109.47260 * 54.29107 * 1 2 3
27 27 H 1.08996 * 109.46983 * 240.00375 * 2 1 3
28 28 H 1.08998 * 109.46939 * 119.99866 * 2 1 3
29 29 H 1.09000 * 109.47230 * 316.30951 * 4 3 2
30 30 H 1.09006 * 109.46758 * 196.31319 * 4 3 2
31 31 H 0.97006 * 119.99843 * 179.97438 * 8 7 5
32 32 H 1.08998 * 110.30062 * 334.35497 * 15 13 3
33 33 H 1.08997 * 110.30555 * 96.50744 * 15 13 3
34 34 H 1.07994 * 119.87673 * 0.02562 * 17 16 15
35 35 H 1.07994 * 120.02564 * 179.97438 * 18 17 16
36 36 H 1.08007 * 120.03581 * 180.02562 * 19 18 17
37 37 H 1.09001 * 110.30074 * 223.89772 * 23 22 16
38 38 H 1.08998 * 110.30078 * 101.74664 * 23 22 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 3.4396 1.4413 -0.3721
5 6 3.5768 1.2507 -1.8607
6 1 2.6971 1.1031 -2.4695
7 6 4.8253 1.2660 -2.4454
8 7 4.9449 1.1003 -3.7446
9 14 6.3468 1.5222 -1.3925
10 1 6.6459 2.9738 -1.2996
11 1 6.1045 0.9786 -0.0320
12 1 7.4997 0.8177 -2.0089
13 6 1.7910 2.0241 1.3028
14 1 0.7616 1.8771 1.6294
15 6 2.1442 3.5256 1.2467
16 6 2.7291 3.8459 2.6057
17 6 2.9249 5.0649 3.2337
18 6 3.4855 5.1155 4.4948
19 6 3.8526 3.9462 5.1343
20 6 3.6574 2.7285 4.5101
21 17 4.1180 1.2603 5.3139
22 6 3.0962 2.6764 3.2438
23 6 2.7826 1.4898 2.3578
24 1 -0.3634 -1.0225 -0.1023
25 1 -0.3634 0.4228 0.9366
26 1 -0.3634 0.5998 -0.8344
27 1 1.8933 -0.5138 -0.8900
28 1 1.8933 -0.5138 0.8900
29 1 3.9828 0.6515 0.1469
30 1 3.8509 2.4107 -0.0904
31 1 5.8233 1.1114 -4.1562
32 1 2.8802 3.7121 0.4647
33 1 1.2468 4.1190 1.0719
34 1 2.6381 5.9790 2.7353
35 1 3.6369 6.0679 4.9810
36 1 4.2908 3.9841 6.1207
37 1 2.3213 0.6933 2.9417
38 1 3.6903 1.1284 1.8745
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001168736713.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 01:33:38
Heat of formation + Delta-G solvation = 5.164981 kcal
Electronic energy + Delta-G solvation = -19793.639259 eV
Core-core repulsion = 16853.809480 eV
Total energy + Delta-G solvation = -2939.829780 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 279.109 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.47790 -39.00009 -37.44205 -35.43129 -34.58588 -32.16213 -31.82122 -30.00735
-28.36975 -27.73704 -24.12625 -23.77066 -22.63215 -22.04572 -20.22526 -19.14035
-17.55241 -17.24622 -16.61302 -16.32551 -16.22027 -15.73770 -15.11349 -15.02396
-14.56245 -14.45814 -14.35025 -14.11657 -13.75266 -13.36711 -13.09351 -12.77675
-12.62685 -12.59124 -12.51076 -12.20135 -12.19193 -12.04778 -11.91022 -11.89645
-11.76065 -11.41983 -11.38552 -10.77495 -9.62633 -9.56423 -8.98697 -8.29003
-6.30012 0.17899 0.27677 1.15587 1.29609 1.31526 1.40902 2.30867
2.62389 3.02254 3.06510 3.39053 3.72936 3.98038 4.00974 4.05428
4.20212 4.33897 4.43032 4.45259 4.50271 4.60615 4.71590 4.76042
4.81549 4.82120 4.90766 4.94730 5.03397 5.14954 5.21640 5.25720
5.28299 5.39584 5.44657 5.56035 5.58764 5.86620 6.01841 6.42439
6.65860 6.77129 7.32883 8.87884
Molecular weight = 279.11amu
Principal moments of inertia in cm(-1)
A = 0.015308 B = 0.006102 C = 0.005497
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1828.630850 B = 4587.879842 C = 5092.117697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.054 3.946
3 N -0.526 5.526
4 C 0.174 3.826
5 C -0.507 4.507
6 H 0.040 0.960
7 C 0.013 3.987
8 N -0.946 5.946
9 Si 0.933 3.067
10 H -0.265 1.265
11 H -0.258 1.258
12 H -0.281 1.281
13 C 0.087 3.913
14 H 0.109 0.891
15 C -0.079 4.079
16 C -0.089 4.089
17 C -0.106 4.106
18 C -0.101 4.101
19 C -0.117 4.117
20 C -0.038 4.038
21 Cl -0.082 7.082
22 C -0.103 4.103
23 C -0.115 4.115
24 H 0.069 0.931
25 H 0.064 0.936
26 H 0.051 0.949
27 H 0.051 0.949
28 H 0.032 0.968
29 H -0.015 1.015
30 H 0.029 0.971
31 H 0.266 0.734
32 H 0.074 0.926
33 H 0.097 0.903
34 H 0.150 0.850
35 H 0.169 0.831
36 H 0.155 0.845
37 H 0.079 0.921
38 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.110 6.395 20.262 21.853
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.074 4.074
3 N -0.249 5.249
4 C 0.047 3.953
5 C -0.546 4.546
6 H 0.058 0.942
7 C -0.184 4.184
8 N -0.587 5.587
9 Si 0.758 3.242
10 H -0.190 1.190
11 H -0.182 1.182
12 H -0.206 1.206
13 C -0.022 4.022
14 H 0.127 0.873
15 C -0.116 4.116
16 C -0.090 4.090
17 C -0.124 4.124
18 C -0.119 4.119
19 C -0.135 4.135
20 C -0.065 4.065
21 Cl -0.053 7.053
22 C -0.104 4.104
23 C -0.153 4.153
24 H 0.088 0.912
25 H 0.083 0.917
26 H 0.070 0.930
27 H 0.070 0.930
28 H 0.050 0.950
29 H 0.003 0.997
30 H 0.047 0.953
31 H 0.075 0.925
32 H 0.092 0.908
33 H 0.116 0.884
34 H 0.167 0.833
35 H 0.186 0.814
36 H 0.172 0.828
37 H 0.098 0.902
38 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -5.225 6.490 19.816 21.496
hybrid contribution 1.530 -0.891 0.343 1.804
sum -3.695 5.599 20.159 21.246
Atomic orbital electron populations
1.21699 0.93290 1.02031 1.02084 1.21997 0.96991 0.88643 0.99753
1.62032 1.18757 1.17692 1.26395 1.19933 0.86091 0.95124 0.94169
1.21268 0.93041 1.47834 0.92453 0.94156 1.25704 1.01951 0.94883
0.95862 1.70037 1.24783 1.52380 1.11492 0.85918 0.79375 0.79248
0.79691 1.18967 1.18209 1.20636 1.22521 0.99007 0.93714 0.86961
0.87345 1.21159 1.01506 0.95895 0.93003 1.20753 0.98880 0.93265
0.96079 1.21090 0.98796 0.97035 0.95455 1.21391 0.97298 0.98911
0.94306 1.21264 1.00905 0.89980 1.01397 1.20756 1.03954 0.88355
0.93402 1.98347 1.91063 1.36515 1.79359 1.20422 0.99635 0.97028
0.93286 1.21785 1.00578 0.96330 0.96643 0.91182 0.91713 0.92973
0.93010 0.95012 0.99715 0.95325 0.92497 0.90800 0.88445 0.83268
0.81401 0.82779 0.90214 0.91723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.81 9.87 71.98 0.71 -3.10 16
2 C 0.05 1.97 5.43 86.30 0.47 2.44 16
3 N -0.53 -21.01 4.39 -870.20 -3.82 -24.83 16
4 C 0.17 8.26 2.42 85.56 0.21 8.47 16
5 C -0.51 -29.32 9.11 25.60 0.23 -29.09 16
6 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16
7 C 0.01 0.78 5.47 84.65 0.46 1.25 16
8 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16
9 Si 0.93 44.92 27.47 68.60 1.88 46.81 16
10 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16
11 H -0.26 -11.90 6.54 99.48 0.65 -11.25 16
12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16
13 C 0.09 2.78 3.02 45.83 0.14 2.92 16
14 H 0.11 3.02 6.58 -2.39 -0.02 3.00 16
15 C -0.08 -2.37 6.19 30.52 0.19 -2.18 16
16 C -0.09 -2.43 6.14 -19.59 -0.12 -2.55 16
17 C -0.11 -2.23 10.04 22.30 0.22 -2.00 16
18 C -0.10 -1.78 10.04 22.24 0.22 -1.55 16
19 C -0.12 -2.37 9.82 22.27 0.22 -2.15 16
20 C -0.04 -0.99 6.32 22.35 0.14 -0.85 16
21 Cl -0.08 -2.07 28.71 -2.72 -0.08 -2.15 16
22 C -0.10 -3.00 6.05 -19.57 -0.12 -3.12 16
23 C -0.11 -3.66 5.12 30.51 0.16 -3.50 16
24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
25 H 0.06 1.58 6.83 -2.39 -0.02 1.56 16
26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
27 H 0.05 2.23 7.37 -2.39 -0.02 2.21 16
28 H 0.03 1.09 7.40 -2.39 -0.02 1.07 16
29 H -0.01 -0.72 5.81 -2.39 -0.01 -0.73 16
30 H 0.03 1.36 5.23 -2.38 -0.01 1.35 16
31 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16
32 H 0.07 2.65 5.99 -2.39 -0.01 2.64 16
33 H 0.10 2.50 8.14 -2.39 -0.02 2.49 16
34 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16
35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16
36 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16
37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16
38 H 0.06 2.44 5.66 -2.39 -0.01 2.43 16
Total: -1.00 -66.57 314.31 2.42 -64.15
By element:
Atomic # 1 Polarization: 9.11 SS G_CDS: 1.00 Total: 10.11 kcal
Atomic # 6 Polarization: -38.15 SS G_CDS: 3.13 Total: -35.02 kcal
Atomic # 7 Polarization: -80.38 SS G_CDS: -3.52 Total: -83.90 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal
Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal
Total: -66.57 2.42 -64.15 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168736713.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.314 kcal
(2) G-P(sol) polarization free energy of solvation -66.567 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.165 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds