Wall clock time and date at job start Tue Mar 31 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47170 * 2 1 4 4 C 1.46901 * 110.99896 * 195.74251 * 3 2 1 5 5 C 1.50698 * 109.47106 * 76.31013 * 4 3 2 6 6 H 1.07993 * 120.00251 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99675 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99468 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00338 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47353 * 270.00084 * 9 7 5 11 11 H 1.48501 * 109.47124 * 30.00307 * 9 7 5 12 12 H 1.48505 * 109.47385 * 149.99974 * 9 7 5 13 13 C 1.46899 * 110.99701 * 71.78981 * 3 2 1 14 14 H 1.08998 * 110.73469 * 310.65542 * 13 3 2 15 15 C 1.54353 * 110.82151 * 187.03491 * 13 3 2 16 16 C 1.51372 * 105.16883 * 215.43289 * 15 13 3 17 17 C 1.38514 * 130.37983 * 197.17093 * 16 15 13 18 18 C 1.38105 * 120.24371 * 180.02562 * 17 16 15 19 19 C 1.38241 * 119.94603 * 359.97438 * 18 17 16 20 20 C 1.38217 * 119.92164 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 119.90294 * 180.02562 * 20 19 18 22 22 C 1.38195 * 109.76320 * 17.19208 * 16 15 13 23 23 C 1.51374 * 109.76146 * 359.97438 * 22 16 15 24 24 H 1.09000 * 109.47426 * 174.28951 * 1 2 3 25 25 H 1.09000 * 109.47290 * 294.29542 * 1 2 3 26 26 H 1.09000 * 109.47260 * 54.29107 * 1 2 3 27 27 H 1.08996 * 109.46983 * 240.00375 * 2 1 3 28 28 H 1.08998 * 109.46939 * 119.99866 * 2 1 3 29 29 H 1.09000 * 109.47230 * 316.30951 * 4 3 2 30 30 H 1.09006 * 109.46758 * 196.31319 * 4 3 2 31 31 H 0.97006 * 119.99843 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.30062 * 334.35497 * 15 13 3 33 33 H 1.08997 * 110.30555 * 96.50744 * 15 13 3 34 34 H 1.07994 * 119.87673 * 0.02562 * 17 16 15 35 35 H 1.07994 * 120.02564 * 179.97438 * 18 17 16 36 36 H 1.08007 * 120.03581 * 180.02562 * 19 18 17 37 37 H 1.09001 * 110.30074 * 223.89772 * 23 22 16 38 38 H 1.08998 * 110.30078 * 101.74664 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4396 1.4413 -0.3721 5 6 3.5768 1.2507 -1.8607 6 1 2.6971 1.1031 -2.4695 7 6 4.8253 1.2660 -2.4454 8 7 4.9449 1.1003 -3.7446 9 14 6.3468 1.5222 -1.3925 10 1 6.6459 2.9738 -1.2996 11 1 6.1045 0.9786 -0.0320 12 1 7.4997 0.8177 -2.0089 13 6 1.7910 2.0241 1.3028 14 1 0.7616 1.8771 1.6294 15 6 2.1442 3.5256 1.2467 16 6 2.7291 3.8459 2.6057 17 6 2.9249 5.0649 3.2337 18 6 3.4855 5.1155 4.4948 19 6 3.8526 3.9462 5.1343 20 6 3.6574 2.7285 4.5101 21 17 4.1180 1.2603 5.3139 22 6 3.0962 2.6764 3.2438 23 6 2.7826 1.4898 2.3578 24 1 -0.3634 -1.0225 -0.1023 25 1 -0.3634 0.4228 0.9366 26 1 -0.3634 0.5998 -0.8344 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9828 0.6515 0.1469 30 1 3.8509 2.4107 -0.0904 31 1 5.8233 1.1114 -4.1562 32 1 2.8802 3.7121 0.4647 33 1 1.2468 4.1190 1.0719 34 1 2.6381 5.9790 2.7353 35 1 3.6369 6.0679 4.9810 36 1 4.2908 3.9841 6.1207 37 1 2.3213 0.6933 2.9417 38 1 3.6903 1.1284 1.8745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168736713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:38 Heat of formation + Delta-G solvation = 5.164981 kcal Electronic energy + Delta-G solvation = -19793.639259 eV Core-core repulsion = 16853.809480 eV Total energy + Delta-G solvation = -2939.829780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47790 -39.00009 -37.44205 -35.43129 -34.58588 -32.16213 -31.82122 -30.00735 -28.36975 -27.73704 -24.12625 -23.77066 -22.63215 -22.04572 -20.22526 -19.14035 -17.55241 -17.24622 -16.61302 -16.32551 -16.22027 -15.73770 -15.11349 -15.02396 -14.56245 -14.45814 -14.35025 -14.11657 -13.75266 -13.36711 -13.09351 -12.77675 -12.62685 -12.59124 -12.51076 -12.20135 -12.19193 -12.04778 -11.91022 -11.89645 -11.76065 -11.41983 -11.38552 -10.77495 -9.62633 -9.56423 -8.98697 -8.29003 -6.30012 0.17899 0.27677 1.15587 1.29609 1.31526 1.40902 2.30867 2.62389 3.02254 3.06510 3.39053 3.72936 3.98038 4.00974 4.05428 4.20212 4.33897 4.43032 4.45259 4.50271 4.60615 4.71590 4.76042 4.81549 4.82120 4.90766 4.94730 5.03397 5.14954 5.21640 5.25720 5.28299 5.39584 5.44657 5.56035 5.58764 5.86620 6.01841 6.42439 6.65860 6.77129 7.32883 8.87884 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015308 B = 0.006102 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.630850 B = 4587.879842 C = 5092.117697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 N -0.526 5.526 4 C 0.174 3.826 5 C -0.507 4.507 6 H 0.040 0.960 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.933 3.067 10 H -0.265 1.265 11 H -0.258 1.258 12 H -0.281 1.281 13 C 0.087 3.913 14 H 0.109 0.891 15 C -0.079 4.079 16 C -0.089 4.089 17 C -0.106 4.106 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.038 4.038 21 Cl -0.082 7.082 22 C -0.103 4.103 23 C -0.115 4.115 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.032 0.968 29 H -0.015 1.015 30 H 0.029 0.971 31 H 0.266 0.734 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.079 0.921 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 6.395 20.262 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.074 4.074 3 N -0.249 5.249 4 C 0.047 3.953 5 C -0.546 4.546 6 H 0.058 0.942 7 C -0.184 4.184 8 N -0.587 5.587 9 Si 0.758 3.242 10 H -0.190 1.190 11 H -0.182 1.182 12 H -0.206 1.206 13 C -0.022 4.022 14 H 0.127 0.873 15 C -0.116 4.116 16 C -0.090 4.090 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.135 4.135 20 C -0.065 4.065 21 Cl -0.053 7.053 22 C -0.104 4.104 23 C -0.153 4.153 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.003 0.997 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.167 0.833 35 H 0.186 0.814 36 H 0.172 0.828 37 H 0.098 0.902 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.225 6.490 19.816 21.496 hybrid contribution 1.530 -0.891 0.343 1.804 sum -3.695 5.599 20.159 21.246 Atomic orbital electron populations 1.21699 0.93290 1.02031 1.02084 1.21997 0.96991 0.88643 0.99753 1.62032 1.18757 1.17692 1.26395 1.19933 0.86091 0.95124 0.94169 1.21268 0.93041 1.47834 0.92453 0.94156 1.25704 1.01951 0.94883 0.95862 1.70037 1.24783 1.52380 1.11492 0.85918 0.79375 0.79248 0.79691 1.18967 1.18209 1.20636 1.22521 0.99007 0.93714 0.86961 0.87345 1.21159 1.01506 0.95895 0.93003 1.20753 0.98880 0.93265 0.96079 1.21090 0.98796 0.97035 0.95455 1.21391 0.97298 0.98911 0.94306 1.21264 1.00905 0.89980 1.01397 1.20756 1.03954 0.88355 0.93402 1.98347 1.91063 1.36515 1.79359 1.20422 0.99635 0.97028 0.93286 1.21785 1.00578 0.96330 0.96643 0.91182 0.91713 0.92973 0.93010 0.95012 0.99715 0.95325 0.92497 0.90800 0.88445 0.83268 0.81401 0.82779 0.90214 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.87 71.98 0.71 -3.10 16 2 C 0.05 1.97 5.43 86.30 0.47 2.44 16 3 N -0.53 -21.01 4.39 -870.20 -3.82 -24.83 16 4 C 0.17 8.26 2.42 85.56 0.21 8.47 16 5 C -0.51 -29.32 9.11 25.60 0.23 -29.09 16 6 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 7 C 0.01 0.78 5.47 84.65 0.46 1.25 16 8 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 9 Si 0.93 44.92 27.47 68.60 1.88 46.81 16 10 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.26 -11.90 6.54 99.48 0.65 -11.25 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 C 0.09 2.78 3.02 45.83 0.14 2.92 16 14 H 0.11 3.02 6.58 -2.39 -0.02 3.00 16 15 C -0.08 -2.37 6.19 30.52 0.19 -2.18 16 16 C -0.09 -2.43 6.14 -19.59 -0.12 -2.55 16 17 C -0.11 -2.23 10.04 22.30 0.22 -2.00 16 18 C -0.10 -1.78 10.04 22.24 0.22 -1.55 16 19 C -0.12 -2.37 9.82 22.27 0.22 -2.15 16 20 C -0.04 -0.99 6.32 22.35 0.14 -0.85 16 21 Cl -0.08 -2.07 28.71 -2.72 -0.08 -2.15 16 22 C -0.10 -3.00 6.05 -19.57 -0.12 -3.12 16 23 C -0.11 -3.66 5.12 30.51 0.16 -3.50 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.58 6.83 -2.39 -0.02 1.56 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 2.23 7.37 -2.39 -0.02 2.21 16 28 H 0.03 1.09 7.40 -2.39 -0.02 1.07 16 29 H -0.01 -0.72 5.81 -2.39 -0.01 -0.73 16 30 H 0.03 1.36 5.23 -2.38 -0.01 1.35 16 31 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 32 H 0.07 2.65 5.99 -2.39 -0.01 2.64 16 33 H 0.10 2.50 8.14 -2.39 -0.02 2.49 16 34 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.44 5.66 -2.39 -0.01 2.43 16 Total: -1.00 -66.57 314.31 2.42 -64.15 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.00 Total: 10.11 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 3.13 Total: -35.02 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -3.52 Total: -83.90 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -66.57 2.42 -64.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168736713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.314 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds