Wall clock time and date at job start Tue Mar 31 2020 01:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47593 * 2 1 4 4 C 1.53007 * 109.47194 * 239.99879 * 2 1 3 5 5 C 1.50694 * 109.47481 * 175.00088 * 4 2 1 6 6 C 1.38236 * 120.00427 * 99.99559 * 5 4 2 7 7 C 1.38221 * 120.01012 * 180.02562 * 6 5 4 8 8 C 1.38254 * 120.03138 * 0.02562 * 7 6 5 9 9 C 1.38200 * 120.01030 * 359.97438 * 8 7 6 10 10 C 1.38325 * 120.00732 * 279.73252 * 5 4 2 11 11 Cl 1.73604 * 120.01386 * 359.97000 * 10 5 4 12 12 N 1.46899 * 109.47094 * 120.00395 * 2 1 3 13 13 C 1.47478 * 111.00426 * 33.18175 * 12 2 1 14 14 C 1.53512 * 87.93559 * 221.30052 * 13 12 2 15 15 C 1.50701 * 114.17144 * 139.66977 * 14 13 12 16 16 H 1.07992 * 119.99790 * 266.15902 * 15 14 13 17 17 C 1.37880 * 119.99765 * 86.15703 * 15 14 13 18 18 N 1.31505 * 120.00045 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99683 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46811 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46616 * 119.99950 * 19 17 15 22 22 H 1.48496 * 109.47229 * 240.00040 * 19 17 15 23 23 C 1.47482 * 110.99696 * 297.21075 * 12 2 1 24 24 H 1.08998 * 109.46818 * 290.12368 * 1 2 3 25 25 H 1.09003 * 109.46961 * 50.11261 * 1 2 3 26 26 H 1.08992 * 109.47372 * 170.12193 * 1 2 3 27 27 H 1.09002 * 109.46832 * 295.00661 * 4 2 1 28 28 H 1.08998 * 109.46793 * 55.00143 * 4 2 1 29 29 H 1.08001 * 119.99419 * 0.02562 * 6 5 4 30 30 H 1.08007 * 119.98388 * 179.97438 * 7 6 5 31 31 H 1.08004 * 120.00165 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.00304 * 180.02562 * 9 8 7 33 33 H 1.09000 * 113.47475 * 336.06884 * 13 12 2 34 34 H 1.09002 * 113.47747 * 106.53112 * 13 12 2 35 35 H 1.08998 * 114.17028 * 272.37970 * 14 13 12 36 36 H 0.97003 * 119.99854 * 180.02562 * 18 17 15 37 37 H 1.09003 * 113.47973 * 253.46877 * 23 12 2 38 38 H 1.08994 * 113.47928 * 23.88051 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 6 4.3279 -1.6753 -0.9019 7 6 5.7054 -1.5778 -0.9596 8 6 6.2981 -0.4198 -1.4278 9 6 5.5133 0.6409 -1.8388 10 6 4.1341 0.5414 -1.7874 11 17 3.1475 1.8706 -2.3108 12 7 2.0196 -0.6926 1.1994 13 6 1.1094 -1.7864 1.5868 14 6 1.3057 -1.3577 3.0477 15 6 0.0484 -1.3999 3.8774 16 1 -0.5543 -0.5109 3.9899 17 6 -0.3324 -2.5735 4.4928 18 7 0.4018 -3.6559 4.3562 19 14 -1.8906 -2.6255 5.5219 20 1 -2.5315 -1.2859 5.5177 21 1 -2.8287 -3.6243 4.9494 22 1 -1.5507 -3.0078 6.9159 23 6 1.6022 0.0138 2.4249 24 1 -0.3633 0.3536 0.9649 25 1 -0.3633 0.6590 -0.7886 26 1 -0.3634 -1.0123 -0.1763 27 1 1.7515 -1.7716 -1.2056 28 1 1.6054 -0.2618 -2.1370 29 1 3.8655 -2.5801 -0.5357 30 1 6.3192 -2.4063 -0.6381 31 1 7.3745 -0.3439 -1.4723 32 1 5.9764 1.5453 -2.2049 33 1 0.0894 -1.6502 1.2276 34 1 1.5050 -2.7784 1.3684 35 1 2.1628 -1.8202 3.5372 36 1 0.1337 -4.4816 4.7888 37 1 2.4153 0.5474 2.9170 38 1 0.7142 0.6311 2.2892 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170265798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:26 Heat of formation + Delta-G solvation = 51.403816 kcal Electronic energy + Delta-G solvation = -19622.253843 eV Core-core repulsion = 16684.429129 eV Total energy + Delta-G solvation = -2937.824713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.85579 -38.88413 -36.33176 -34.28233 -32.40911 -30.80101 -30.49512 -27.27067 -26.37286 -24.83983 -24.00384 -22.56179 -21.58221 -19.91562 -17.96091 -16.98052 -16.79755 -15.62979 -15.34866 -14.76505 -14.49443 -14.39315 -13.96562 -13.70968 -13.56044 -12.87630 -12.66175 -12.39022 -12.04684 -11.91187 -11.50430 -11.45218 -11.17350 -11.09857 -10.98826 -10.97015 -10.60982 -10.46856 -10.43502 -10.13567 -9.66912 -9.09793 -8.88407 -8.72598 -8.48905 -8.40904 -7.80155 -6.04229 -4.08062 1.28659 1.42740 2.24586 3.27641 3.36244 3.39680 3.76527 4.40756 4.78283 4.85440 5.00519 5.06077 5.24840 5.34301 5.40726 5.47966 5.55395 5.76090 5.77196 5.86638 5.99889 6.05500 6.11272 6.15380 6.25323 6.32046 6.45248 6.51808 6.58515 6.66210 6.67657 6.79951 6.90964 6.94505 7.19864 7.29503 7.75770 7.94543 8.16395 8.40888 8.95375 9.56766 11.05331 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.004461 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.062365 B = 6274.651640 C = 6879.952245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 H 0.073 0.927 4 C -0.071 4.071 5 C -0.043 4.043 6 C -0.083 4.083 7 C -0.115 4.115 8 C -0.121 4.121 9 C -0.115 4.115 10 C -0.038 4.038 11 Cl -0.079 7.079 12 N -0.474 5.474 13 C -0.008 4.008 14 C 0.043 3.957 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.009 4.009 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.666 6.235 -13.538 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.057 4.057 3 H 0.091 0.909 4 C -0.109 4.109 5 C -0.044 4.044 6 C -0.101 4.101 7 C -0.133 4.133 8 C -0.139 4.139 9 C -0.134 4.134 10 C -0.064 4.064 11 Cl -0.050 7.050 12 N -0.197 5.197 13 C -0.137 4.137 14 C 0.024 3.976 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.137 4.137 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.302 6.054 -13.712 17.135 hybrid contribution -1.766 0.239 0.586 1.876 sum 6.536 6.293 -13.127 15.957 Atomic orbital electron populations 1.22481 0.97103 1.02125 1.02378 1.21994 0.92998 0.98303 0.92429 0.90856 1.20652 0.90156 1.02040 0.98049 1.19649 0.96577 0.91979 0.96220 1.21042 0.93162 0.98574 0.97329 1.21232 0.95038 0.97988 0.99030 1.20997 0.99585 0.93265 1.00084 1.20924 0.91441 0.99611 1.01435 1.20792 0.91460 0.89876 1.04322 1.98340 1.70795 1.46718 1.89121 1.69063 1.43312 1.07399 0.99882 1.24277 0.94935 0.94292 1.00175 1.20054 0.97310 0.89200 0.91076 1.21077 1.07632 0.96035 1.30395 0.92519 1.24997 0.96761 0.95803 0.95974 1.69975 1.37991 1.00704 1.43749 0.86607 0.83521 0.78066 0.80237 1.19754 1.21040 1.20954 1.24041 0.97911 0.99672 0.92104 0.91131 0.93241 0.91651 0.90649 0.90822 0.85077 0.85737 0.85706 0.85596 0.91254 0.92381 0.92154 0.93011 0.92477 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 7.72 37.16 0.29 -2.65 16 2 C 0.05 0.87 2.35 -67.71 -0.16 0.71 16 3 H 0.07 1.24 7.33 -51.93 -0.38 0.86 16 4 C -0.07 -1.05 4.40 -27.88 -0.12 -1.17 16 5 C -0.04 -0.63 4.87 -104.59 -0.51 -1.14 16 6 C -0.08 -1.17 9.67 -39.59 -0.38 -1.55 16 7 C -0.11 -1.40 10.04 -39.58 -0.40 -1.80 16 8 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 9 C -0.12 -1.39 9.83 -39.54 -0.39 -1.78 16 10 C -0.04 -0.52 6.31 -39.50 -0.25 -0.77 16 11 Cl -0.08 -1.01 26.68 -51.86 -1.38 -2.39 16 12 N -0.47 -9.29 6.06 -236.59 -1.43 -10.72 16 13 C -0.01 -0.18 6.83 -7.55 -0.05 -0.23 16 14 C 0.04 1.06 3.77 -91.24 -0.34 0.71 16 15 C -0.51 -13.80 8.82 -34.44 -0.30 -14.10 16 16 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -25.35 13.26 55.43 0.74 -24.62 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.01 -0.18 7.10 -7.54 -0.05 -0.24 16 24 H 0.07 1.25 5.84 -51.93 -0.30 0.94 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.07 6.51 -51.93 -0.34 0.73 16 27 H 0.07 1.13 7.93 -51.93 -0.41 0.71 16 28 H 0.07 0.99 7.34 -51.93 -0.38 0.61 16 29 H 0.13 1.86 8.04 -52.49 -0.42 1.44 16 30 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.07 1.52 4.78 -51.93 -0.25 1.27 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.66 8.11 -51.93 -0.42 1.24 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.18 5.94 -51.93 -0.31 0.88 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -27.99 320.61 -10.74 -38.72 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.30 Total: 2.31 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -3.17 Total: -24.04 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.70 Total: -35.34 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.38 Total: -2.39 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.99 -10.74 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170265798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.128 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds