Wall clock time and date at job start Tue Mar 31 2020 01:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47593 * 2 1 4 4 C 1.53007 * 109.47194 * 239.99879 * 2 1 3 5 5 C 1.50694 * 109.47481 * 175.00088 * 4 2 1 6 6 C 1.38236 * 120.00427 * 99.99559 * 5 4 2 7 7 C 1.38221 * 120.01012 * 180.02562 * 6 5 4 8 8 C 1.38254 * 120.03138 * 0.02562 * 7 6 5 9 9 C 1.38200 * 120.01030 * 359.97438 * 8 7 6 10 10 C 1.38325 * 120.00732 * 279.73252 * 5 4 2 11 11 Cl 1.73604 * 120.01386 * 359.97000 * 10 5 4 12 12 N 1.46899 * 109.47094 * 120.00395 * 2 1 3 13 13 C 1.47478 * 111.00426 * 33.18175 * 12 2 1 14 14 C 1.53512 * 87.93559 * 221.30052 * 13 12 2 15 15 C 1.50701 * 114.17144 * 139.66977 * 14 13 12 16 16 H 1.07992 * 119.99790 * 266.15902 * 15 14 13 17 17 C 1.37880 * 119.99765 * 86.15703 * 15 14 13 18 18 N 1.31505 * 120.00045 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99683 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46811 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46616 * 119.99950 * 19 17 15 22 22 H 1.48496 * 109.47229 * 240.00040 * 19 17 15 23 23 C 1.47482 * 110.99696 * 297.21075 * 12 2 1 24 24 H 1.08998 * 109.46818 * 290.12368 * 1 2 3 25 25 H 1.09003 * 109.46961 * 50.11261 * 1 2 3 26 26 H 1.08992 * 109.47372 * 170.12193 * 1 2 3 27 27 H 1.09002 * 109.46832 * 295.00661 * 4 2 1 28 28 H 1.08998 * 109.46793 * 55.00143 * 4 2 1 29 29 H 1.08001 * 119.99419 * 0.02562 * 6 5 4 30 30 H 1.08007 * 119.98388 * 179.97438 * 7 6 5 31 31 H 1.08004 * 120.00165 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.00304 * 180.02562 * 9 8 7 33 33 H 1.09000 * 113.47475 * 336.06884 * 13 12 2 34 34 H 1.09002 * 113.47747 * 106.53112 * 13 12 2 35 35 H 1.08998 * 114.17028 * 272.37970 * 14 13 12 36 36 H 0.97003 * 119.99854 * 180.02562 * 18 17 15 37 37 H 1.09003 * 113.47973 * 253.46877 * 23 12 2 38 38 H 1.08994 * 113.47928 * 23.88051 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 6 4.3279 -1.6753 -0.9019 7 6 5.7054 -1.5778 -0.9596 8 6 6.2981 -0.4198 -1.4278 9 6 5.5133 0.6409 -1.8388 10 6 4.1341 0.5414 -1.7874 11 17 3.1475 1.8706 -2.3108 12 7 2.0196 -0.6926 1.1994 13 6 1.1094 -1.7864 1.5868 14 6 1.3057 -1.3577 3.0477 15 6 0.0484 -1.3999 3.8774 16 1 -0.5543 -0.5109 3.9899 17 6 -0.3324 -2.5735 4.4928 18 7 0.4018 -3.6559 4.3562 19 14 -1.8906 -2.6255 5.5219 20 1 -2.5315 -1.2859 5.5177 21 1 -2.8287 -3.6243 4.9494 22 1 -1.5507 -3.0078 6.9159 23 6 1.6022 0.0138 2.4249 24 1 -0.3633 0.3536 0.9649 25 1 -0.3633 0.6590 -0.7886 26 1 -0.3634 -1.0123 -0.1763 27 1 1.7515 -1.7716 -1.2056 28 1 1.6054 -0.2618 -2.1370 29 1 3.8655 -2.5801 -0.5357 30 1 6.3192 -2.4063 -0.6381 31 1 7.3745 -0.3439 -1.4723 32 1 5.9764 1.5453 -2.2049 33 1 0.0894 -1.6502 1.2276 34 1 1.5050 -2.7784 1.3684 35 1 2.1628 -1.8202 3.5372 36 1 0.1337 -4.4816 4.7888 37 1 2.4153 0.5474 2.9170 38 1 0.7142 0.6311 2.2892 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170265798.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:24 Heat of formation + Delta-G solvation = 36.428528 kcal Electronic energy + Delta-G solvation = -19622.903220 eV Core-core repulsion = 16684.429129 eV Total energy + Delta-G solvation = -2938.474091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34488 -40.05671 -37.32063 -35.73600 -34.29352 -32.01083 -31.51971 -29.09817 -27.55027 -26.61599 -25.82209 -23.54857 -22.73067 -21.42602 -19.66434 -18.77682 -17.89818 -17.00186 -16.57393 -16.30260 -16.18900 -15.90018 -15.31938 -14.84861 -14.60729 -14.36704 -14.14835 -13.87051 -13.47536 -13.18417 -12.97153 -12.83947 -12.72886 -12.43590 -12.36429 -12.23759 -12.18161 -12.11851 -11.75836 -11.48782 -11.40894 -11.00864 -10.78065 -10.46360 -9.72276 -9.54660 -9.41254 -8.12922 -6.23435 0.30085 0.44309 1.24596 1.41411 1.43780 1.54820 2.43441 2.77634 3.16790 3.36579 3.75120 3.91115 4.00562 4.15441 4.23392 4.39901 4.41093 4.47530 4.48864 4.52630 4.63664 4.70359 4.75676 4.82254 4.93973 4.95402 5.05516 5.13568 5.16527 5.29753 5.35071 5.37787 5.53719 5.64195 5.66544 5.67930 5.89441 5.98437 6.34360 6.49778 6.85895 7.44717 8.96904 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.004461 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.062365 B = 6274.651640 C = 6879.952245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.054 3.946 3 H 0.076 0.924 4 C -0.065 4.065 5 C -0.063 4.063 6 C -0.103 4.103 7 C -0.119 4.119 8 C -0.115 4.115 9 C -0.118 4.118 10 C -0.050 4.050 11 Cl -0.075 7.075 12 N -0.469 5.469 13 C 0.009 3.991 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.017 3.983 18 N -0.922 5.922 19 Si 0.954 3.046 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.004 3.996 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.061 0.939 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.891 7.494 -14.486 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.055 4.055 3 H 0.095 0.905 4 C -0.102 4.102 5 C -0.064 4.064 6 C -0.122 4.122 7 C -0.137 4.137 8 C -0.133 4.133 9 C -0.136 4.136 10 C -0.077 4.077 11 Cl -0.046 7.046 12 N -0.191 5.191 13 C -0.120 4.120 14 C 0.005 3.995 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.182 4.182 18 N -0.561 5.561 19 Si 0.779 3.221 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.175 0.825 32 H 0.166 0.834 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.527 7.329 -14.670 18.483 hybrid contribution -1.743 -0.120 0.841 1.939 sum 6.784 7.209 -13.829 17.007 Atomic orbital electron populations 1.22412 0.96457 1.02359 1.02407 1.22043 0.93507 0.98227 0.91713 0.90549 1.20565 0.90853 1.01349 0.97472 1.19664 0.96304 0.92786 0.97623 1.21103 0.94330 0.98359 0.98376 1.21515 0.94434 0.99169 0.98603 1.21389 1.01217 0.92294 0.98428 1.21270 0.90909 1.00671 1.00775 1.20943 0.92305 0.89749 1.04664 1.98335 1.70849 1.46354 1.89067 1.69002 1.42823 1.06554 1.00696 1.23990 0.95462 0.94248 0.98335 1.19980 0.95471 0.91946 0.92100 1.21376 1.08215 0.96066 1.30675 0.92483 1.25770 0.99818 0.95437 0.97212 1.70097 1.39782 1.01280 1.44925 0.85572 0.79733 0.78314 0.78445 1.18894 1.20610 1.20734 1.23871 0.98380 0.97928 0.92297 0.92768 0.90541 0.92212 0.91467 0.89339 0.86320 0.83881 0.82507 0.83445 0.90937 0.94164 0.95837 0.92954 0.92056 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.50 7.72 71.98 0.56 -4.94 16 2 C 0.05 1.75 2.35 44.92 0.11 1.85 16 3 H 0.08 2.46 7.33 -2.39 -0.02 2.44 16 4 C -0.06 -1.86 4.40 29.85 0.13 -1.72 16 5 C -0.06 -1.78 4.87 -19.85 -0.10 -1.88 16 6 C -0.10 -2.89 9.67 22.27 0.22 -2.67 16 7 C -0.12 -2.73 10.04 22.27 0.22 -2.51 16 8 C -0.12 -2.29 10.05 22.26 0.22 -2.06 16 9 C -0.12 -2.54 9.83 22.29 0.22 -2.33 16 10 C -0.05 -1.29 6.31 22.32 0.14 -1.14 16 11 Cl -0.07 -1.78 26.68 -2.72 -0.07 -1.85 16 12 N -0.47 -18.39 6.06 -902.43 -5.47 -23.86 16 13 C 0.01 0.39 6.83 83.57 0.57 0.96 16 14 C 0.02 1.23 3.77 -11.19 -0.04 1.18 16 15 C -0.53 -28.59 8.82 25.60 0.23 -28.37 16 16 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 17 C 0.02 0.93 5.46 84.66 0.46 1.39 16 18 N -0.92 -53.89 13.26 21.45 0.28 -53.60 16 19 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.00 0.17 7.10 83.57 0.59 0.76 16 24 H 0.05 1.85 5.84 -2.39 -0.01 1.84 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.90 6.51 -2.39 -0.02 1.89 16 27 H 0.07 2.01 7.93 -2.39 -0.02 1.99 16 28 H 0.09 2.24 7.34 -2.39 -0.02 2.22 16 29 H 0.12 3.50 8.04 -2.91 -0.02 3.48 16 30 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.07 3.22 4.78 -2.39 -0.01 3.20 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.02 1.35 8.11 -2.39 -0.02 1.33 16 36 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.07 2.67 5.94 -2.39 -0.01 2.65 16 Total: -1.00 -60.15 320.61 1.34 -58.81 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.05 Total: 16.86 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 3.53 Total: -41.48 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -5.18 Total: -77.47 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -60.15 1.34 -58.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170265798.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.234 kcal (2) G-P(sol) polarization free energy of solvation -60.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds