Wall clock time and date at job start Tue Mar 31 2020 01:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47022 * 2 1 4 4 C 1.53002 * 109.46986 * 120.00482 * 2 1 3 5 5 C 1.50702 * 109.46795 * 294.54333 * 4 2 1 6 6 C 1.38237 * 120.00588 * 98.02706 * 5 4 2 7 7 C 1.38220 * 120.01667 * 180.29721 * 6 5 4 8 8 C 1.38271 * 120.02232 * 359.44984 * 7 6 5 9 9 C 1.38193 * 120.01012 * 0.54625 * 8 7 6 10 10 C 1.38328 * 120.00836 * 278.04413 * 5 4 2 11 11 Cl 1.73597 * 120.01461 * 359.96357 * 10 5 4 12 12 N 1.46900 * 109.46916 * 239.99923 * 2 1 3 13 13 C 1.47479 * 110.99881 * 164.76886 * 12 2 1 14 14 C 1.53515 * 87.93171 * 221.29922 * 13 12 2 15 15 C 1.50697 * 114.17194 * 139.67007 * 14 13 12 16 16 H 1.07994 * 120.00182 * 266.15346 * 15 14 13 17 17 C 1.37874 * 119.99838 * 86.15995 * 15 14 13 18 18 N 1.31514 * 119.99883 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00102 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47015 * 90.00329 * 19 17 15 21 21 H 1.48502 * 109.46829 * 210.00056 * 19 17 15 22 22 H 1.48493 * 109.47109 * 329.99868 * 19 17 15 23 23 C 1.47482 * 110.99959 * 68.79462 * 12 2 1 24 24 H 1.08998 * 109.46787 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.46952 * 59.99631 * 1 2 3 26 26 H 1.09001 * 109.47358 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47312 * 174.55169 * 4 2 1 28 28 H 1.08995 * 109.47318 * 54.54210 * 4 2 1 29 29 H 1.08002 * 119.99455 * 0.02562 * 6 5 4 30 30 H 1.07995 * 119.99036 * 179.70449 * 7 6 5 31 31 H 1.07994 * 119.99569 * 180.28073 * 8 7 6 32 32 H 1.08004 * 120.00313 * 179.74418 * 9 8 7 33 33 H 1.08998 * 113.47318 * 336.05992 * 13 12 2 34 34 H 1.08998 * 113.47856 * 106.53070 * 13 12 2 35 35 H 1.09007 * 114.33937 * 272.36705 * 14 13 12 36 36 H 0.97008 * 120.00314 * 180.02562 * 18 17 15 37 37 H 1.08996 * 113.47745 * 253.47197 * 23 12 2 38 38 H 1.09006 * 113.47416 * 23.87715 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6509 0.0627 2.4760 6 6 0.5302 -0.2981 3.2004 7 6 0.1697 0.4247 4.3221 8 6 0.9362 1.5020 4.7268 9 6 2.0568 1.8635 4.0034 10 6 2.4150 1.1438 2.8772 11 17 3.8228 1.5972 1.9683 12 7 2.0196 -0.6925 -1.1994 13 6 3.4483 -0.4070 -1.4284 14 6 3.1267 -0.2836 -2.9244 15 6 3.8487 0.8415 -3.6200 16 1 3.3732 1.8056 -3.7239 17 6 5.1161 0.6400 -4.1238 18 7 5.7460 1.6218 -4.7313 19 14 5.9388 -1.0274 -3.9436 20 1 5.6067 -1.8727 -5.1184 21 1 7.4107 -0.8470 -3.8637 22 1 5.4531 -1.6877 -2.7054 23 6 1.7262 0.0870 -2.4166 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1256 -0.8067 1.2018 28 1 1.5991 -1.7169 1.2994 29 1 -0.0664 -1.1422 2.8874 30 1 -0.7086 0.1454 4.8849 31 1 0.6567 2.0636 5.6058 32 1 2.6531 2.7076 4.3173 33 1 3.7819 0.5276 -0.9775 34 1 4.1021 -1.2466 -1.1925 35 1 3.1681 -1.2253 -3.4719 36 1 6.6376 1.4800 -5.0861 37 1 0.9207 -0.3340 -3.0181 38 1 1.5994 1.1533 -2.2292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170265799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:29 Heat of formation + Delta-G solvation = 43.710548 kcal Electronic energy + Delta-G solvation = -19538.405775 eV Core-core repulsion = 16600.247456 eV Total energy + Delta-G solvation = -2938.158318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.93359 -38.99479 -36.37631 -34.69870 -32.43163 -30.92384 -30.77334 -27.68033 -26.95467 -24.64899 -23.76703 -22.80593 -21.67137 -19.81584 -18.66255 -17.11744 -16.92033 -15.83445 -15.67015 -15.21643 -14.64760 -14.04024 -13.97942 -13.75382 -13.69376 -13.25937 -12.88277 -12.58536 -12.16659 -11.85198 -11.65564 -11.57289 -11.51118 -11.45888 -11.24394 -10.95228 -10.79961 -10.67330 -10.27082 -9.92807 -9.82854 -9.36868 -9.07814 -8.99506 -8.69671 -8.52085 -8.07859 -6.07836 -4.07735 1.03210 1.12454 2.19509 3.31546 3.39832 3.45108 3.48045 4.44640 4.49872 4.64919 4.75522 4.95281 5.07554 5.14392 5.23378 5.28109 5.32726 5.48532 5.66877 5.75445 5.81582 5.88726 6.01004 6.03446 6.08906 6.09776 6.23424 6.29252 6.34708 6.42775 6.53517 6.55940 6.57026 6.67036 6.79943 7.05438 7.40101 7.72546 7.92625 8.52025 8.95492 9.55478 11.04796 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.004918 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.515170 B = 5691.826129 C = 6235.470764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 H 0.050 0.950 4 C -0.076 4.076 5 C -0.061 4.061 6 C -0.105 4.105 7 C -0.117 4.117 8 C -0.118 4.118 9 C -0.111 4.111 10 C -0.037 4.037 11 Cl -0.056 7.056 12 N -0.480 5.480 13 C -0.008 4.008 14 C -0.001 4.001 15 C -0.509 4.509 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.900 5.900 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.257 1.257 23 C 0.013 3.987 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.264 0.736 37 H 0.064 0.936 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 -2.607 18.739 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.056 4.056 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.062 4.062 6 C -0.123 4.123 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.129 4.129 10 C -0.064 4.064 11 Cl -0.027 7.027 12 N -0.202 5.202 13 C -0.137 4.137 14 C -0.021 4.021 15 C -0.547 4.547 16 H 0.091 0.909 17 C -0.128 4.128 18 N -0.537 5.537 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.181 1.181 23 C -0.116 4.116 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.996 -3.193 18.667 21.414 hybrid contribution 0.932 0.214 0.087 0.961 sum -9.063 -2.979 18.754 21.041 Atomic orbital electron populations 1.21812 0.94911 1.01907 1.01283 1.22078 0.95484 0.96561 0.91457 0.93161 1.20638 1.02344 0.98254 0.90144 1.19871 0.94493 0.94782 0.97101 1.21063 0.95990 1.00247 0.95031 1.21216 0.99765 0.95699 0.96867 1.21064 0.94939 0.97690 0.99964 1.21062 0.97842 0.99862 0.94158 1.20974 0.92077 0.97829 0.95511 1.98419 1.39001 1.91681 1.73623 1.68896 1.07787 1.42865 1.00686 1.24312 0.89239 0.99335 1.00821 1.20520 0.92244 0.97647 0.91672 1.20922 1.00320 0.97465 1.35997 0.90883 1.25000 0.97128 0.96631 0.94068 1.69915 1.13765 1.32071 1.37997 0.86889 0.78457 0.84899 0.79600 1.20297 1.21562 1.18098 1.23728 0.99886 0.96265 0.91732 0.92839 0.92658 0.92257 0.90139 0.90221 0.85183 0.85640 0.85436 0.85135 0.91690 0.92076 0.92648 0.92660 0.91732 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.93 37.16 0.33 -1.63 16 2 C 0.05 0.86 1.69 -67.71 -0.11 0.75 16 3 H 0.05 0.90 6.96 -51.93 -0.36 0.54 16 4 C -0.08 -1.09 4.46 -27.88 -0.12 -1.22 16 5 C -0.06 -0.78 4.49 -104.59 -0.47 -1.25 16 6 C -0.11 -1.10 8.60 -39.59 -0.34 -1.44 16 7 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 8 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 9 C -0.11 -1.20 9.83 -39.55 -0.39 -1.59 16 10 C -0.04 -0.49 6.31 -39.50 -0.25 -0.74 16 11 Cl -0.06 -0.84 26.85 -51.86 -1.39 -2.23 16 12 N -0.48 -9.11 6.13 -236.57 -1.45 -10.56 16 13 C -0.01 -0.17 5.97 -7.54 -0.04 -0.22 16 14 C 0.00 -0.03 2.96 -91.24 -0.27 -0.30 16 15 C -0.51 -14.22 9.37 -34.44 -0.32 -14.54 16 16 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 19 Si 0.87 21.48 27.14 -169.99 -4.61 16.87 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.01 5.68 56.52 0.32 -5.69 16 23 C 0.01 0.26 6.31 -7.53 -0.05 0.21 16 24 H 0.05 0.67 6.67 -51.93 -0.35 0.32 16 25 H 0.05 0.79 7.48 -51.93 -0.39 0.40 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.26 6.71 -51.93 -0.35 0.92 16 28 H 0.08 1.06 8.03 -51.93 -0.42 0.65 16 29 H 0.13 1.15 8.05 -52.49 -0.42 0.73 16 30 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.06 1.45 7.64 -51.93 -0.40 1.06 16 34 H 0.06 1.32 7.11 -51.93 -0.37 0.95 16 35 H 0.06 1.32 7.04 -51.92 -0.37 0.96 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.24 7.75 -51.93 -0.40 0.84 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -29.89 318.72 -10.38 -40.27 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.57 Total: 0.40 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -2.93 Total: -22.88 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.68 Total: -37.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.61 Total: 16.87 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.39 Total: -2.23 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.89 -10.38 -40.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170265799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.981 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds