Wall clock time and date at job start Tue Mar 31 2020 01:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47022 * 2 1 4 4 C 1.53002 * 109.46986 * 120.00482 * 2 1 3 5 5 C 1.50702 * 109.46795 * 294.54333 * 4 2 1 6 6 C 1.38237 * 120.00588 * 98.02706 * 5 4 2 7 7 C 1.38220 * 120.01667 * 180.29721 * 6 5 4 8 8 C 1.38271 * 120.02232 * 359.44984 * 7 6 5 9 9 C 1.38193 * 120.01012 * 0.54625 * 8 7 6 10 10 C 1.38328 * 120.00836 * 278.04413 * 5 4 2 11 11 Cl 1.73597 * 120.01461 * 359.96357 * 10 5 4 12 12 N 1.46900 * 109.46916 * 239.99923 * 2 1 3 13 13 C 1.47479 * 110.99881 * 164.76886 * 12 2 1 14 14 C 1.53515 * 87.93171 * 221.29922 * 13 12 2 15 15 C 1.50697 * 114.17194 * 139.67007 * 14 13 12 16 16 H 1.07994 * 120.00182 * 266.15346 * 15 14 13 17 17 C 1.37874 * 119.99838 * 86.15995 * 15 14 13 18 18 N 1.31514 * 119.99883 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00102 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47015 * 90.00329 * 19 17 15 21 21 H 1.48502 * 109.46829 * 210.00056 * 19 17 15 22 22 H 1.48493 * 109.47109 * 329.99868 * 19 17 15 23 23 C 1.47482 * 110.99959 * 68.79462 * 12 2 1 24 24 H 1.08998 * 109.46787 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.46952 * 59.99631 * 1 2 3 26 26 H 1.09001 * 109.47358 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47312 * 174.55169 * 4 2 1 28 28 H 1.08995 * 109.47318 * 54.54210 * 4 2 1 29 29 H 1.08002 * 119.99455 * 0.02562 * 6 5 4 30 30 H 1.07995 * 119.99036 * 179.70449 * 7 6 5 31 31 H 1.07994 * 119.99569 * 180.28073 * 8 7 6 32 32 H 1.08004 * 120.00313 * 179.74418 * 9 8 7 33 33 H 1.08998 * 113.47318 * 336.05992 * 13 12 2 34 34 H 1.08998 * 113.47856 * 106.53070 * 13 12 2 35 35 H 1.09007 * 114.33937 * 272.36705 * 14 13 12 36 36 H 0.97008 * 120.00314 * 180.02562 * 18 17 15 37 37 H 1.08996 * 113.47745 * 253.47197 * 23 12 2 38 38 H 1.09006 * 113.47416 * 23.87715 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6509 0.0627 2.4760 6 6 0.5302 -0.2981 3.2004 7 6 0.1697 0.4247 4.3221 8 6 0.9362 1.5020 4.7268 9 6 2.0568 1.8635 4.0034 10 6 2.4150 1.1438 2.8772 11 17 3.8228 1.5972 1.9683 12 7 2.0196 -0.6925 -1.1994 13 6 3.4483 -0.4070 -1.4284 14 6 3.1267 -0.2836 -2.9244 15 6 3.8487 0.8415 -3.6200 16 1 3.3732 1.8056 -3.7239 17 6 5.1161 0.6400 -4.1238 18 7 5.7460 1.6218 -4.7313 19 14 5.9388 -1.0274 -3.9436 20 1 5.6067 -1.8727 -5.1184 21 1 7.4107 -0.8470 -3.8637 22 1 5.4531 -1.6877 -2.7054 23 6 1.7262 0.0870 -2.4166 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1256 -0.8067 1.2018 28 1 1.5991 -1.7169 1.2994 29 1 -0.0664 -1.1422 2.8874 30 1 -0.7086 0.1454 4.8849 31 1 0.6567 2.0636 5.6058 32 1 2.6531 2.7076 4.3173 33 1 3.7819 0.5276 -0.9775 34 1 4.1021 -1.2466 -1.1925 35 1 3.1681 -1.2253 -3.4719 36 1 6.6376 1.4800 -5.0861 37 1 0.9207 -0.3340 -3.0181 38 1 1.5994 1.1533 -2.2292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170265799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:29 Heat of formation + Delta-G solvation = 25.561148 kcal Electronic energy + Delta-G solvation = -19539.192792 eV Core-core repulsion = 16600.247456 eV Total energy + Delta-G solvation = -2938.945335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = -0.17 seconds Orbital eigenvalues (eV) -41.22360 -40.17860 -37.38550 -35.98560 -34.47669 -32.03721 -31.62845 -29.44143 -28.12406 -26.20963 -25.54954 -23.62217 -22.69564 -21.13753 -20.46885 -19.00325 -17.96560 -17.15981 -16.69422 -16.42807 -16.11612 -15.67662 -15.23172 -15.08340 -14.74147 -14.68997 -14.23826 -13.87833 -13.53206 -13.22074 -13.12694 -13.04384 -12.68465 -12.60438 -12.47227 -12.24296 -12.19344 -11.84546 -11.80350 -11.71257 -11.50460 -11.21458 -11.02053 -10.64309 -9.82245 -9.74373 -9.57245 -8.30284 -6.35041 0.21001 0.32836 1.23727 1.36541 1.38451 1.51406 2.36750 2.67848 3.03426 3.19054 3.76271 3.83685 3.94005 4.05345 4.12633 4.21799 4.33080 4.41193 4.43543 4.46139 4.58354 4.64782 4.71553 4.83289 4.85869 4.90072 4.98741 5.01784 5.07758 5.13714 5.24672 5.33312 5.44414 5.48676 5.49929 5.57216 5.64087 5.91946 6.28082 6.31034 6.70176 7.31661 8.86015 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.004918 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.515170 B = 5691.826129 C = 6235.470764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 H 0.028 0.972 4 C -0.068 4.068 5 C -0.079 4.079 6 C -0.105 4.105 7 C -0.110 4.110 8 C -0.111 4.111 9 C -0.121 4.121 10 C -0.058 4.058 11 Cl -0.088 7.088 12 N -0.466 5.466 13 C 0.004 3.996 14 C -0.016 4.016 15 C -0.513 4.513 16 H 0.031 0.969 17 C 0.016 3.984 18 N -0.949 5.949 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.238 1.238 23 C 0.022 3.978 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.266 0.734 37 H 0.084 0.916 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.106 -4.620 21.251 24.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.056 4.056 3 H 0.046 0.954 4 C -0.106 4.106 5 C -0.080 4.080 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.129 4.129 9 C -0.139 4.139 10 C -0.084 4.084 11 Cl -0.059 7.059 12 N -0.189 5.189 13 C -0.126 4.126 14 C -0.035 4.035 15 C -0.551 4.551 16 H 0.049 0.951 17 C -0.181 4.181 18 N -0.589 5.589 19 Si 0.764 3.236 20 H -0.192 1.192 21 H -0.215 1.215 22 H -0.161 1.161 23 C -0.107 4.107 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.167 0.833 30 H 0.177 0.823 31 H 0.176 0.824 32 H 0.157 0.843 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.092 -5.212 21.195 24.952 hybrid contribution 1.458 0.945 -0.608 1.841 sum -10.634 -4.267 20.587 23.560 Atomic orbital electron populations 1.21753 0.92653 1.02919 1.01768 1.22130 0.97225 0.95301 0.90966 0.95393 1.20498 1.01082 0.98902 0.90071 1.19803 0.95889 0.95098 0.97242 1.21322 0.95077 1.00827 0.95099 1.21637 1.00336 0.94709 0.96116 1.21477 0.93641 0.97593 1.00229 1.21293 0.98824 1.00066 0.93747 1.21182 0.91711 0.99063 0.96460 1.98404 1.40948 1.92003 1.74577 1.68857 1.05835 1.42721 1.01459 1.24019 0.91058 0.98724 0.98769 1.20542 0.94240 0.96262 0.92486 1.21134 1.00634 0.97202 1.36146 0.95116 1.25884 0.97810 1.00686 0.93733 1.70061 1.14411 1.34636 1.39788 0.85836 0.77132 0.80035 0.80615 1.19175 1.21506 1.16074 1.23567 0.98606 0.95971 0.92523 0.91168 0.93410 0.90876 0.92193 0.88948 0.83272 0.82269 0.82355 0.84341 0.93310 0.91703 0.92094 0.92517 0.89807 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.93 71.98 0.64 -2.75 16 2 C 0.05 1.66 1.69 44.92 0.08 1.73 16 3 H 0.03 1.02 6.96 -2.39 -0.02 1.00 16 4 C -0.07 -1.86 4.46 29.85 0.13 -1.73 16 5 C -0.08 -1.88 4.49 -19.84 -0.09 -1.96 16 6 C -0.11 -1.83 8.60 22.27 0.19 -1.64 16 7 C -0.11 -1.49 10.05 22.27 0.22 -1.27 16 8 C -0.11 -1.62 10.05 22.27 0.22 -1.40 16 9 C -0.12 -2.41 9.83 22.29 0.22 -2.19 16 10 C -0.06 -1.47 6.31 22.32 0.14 -1.33 16 11 Cl -0.09 -2.71 26.85 -2.72 -0.07 -2.78 16 12 N -0.47 -17.21 6.13 -902.37 -5.53 -22.74 16 13 C 0.00 0.16 5.97 83.58 0.50 0.66 16 14 C -0.02 -0.76 2.96 -11.20 -0.03 -0.79 16 15 C -0.51 -29.67 9.37 25.60 0.24 -29.43 16 16 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 17 C 0.02 0.96 5.47 84.65 0.46 1.42 16 18 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 19 Si 0.94 44.57 27.14 68.60 1.86 46.43 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 22 H -0.24 -10.42 5.68 99.48 0.57 -9.86 16 23 C 0.02 0.90 6.31 83.58 0.53 1.42 16 24 H 0.07 1.55 6.67 -2.39 -0.02 1.54 16 25 H 0.05 1.28 7.48 -2.39 -0.02 1.26 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.87 6.71 -2.39 -0.02 1.86 16 28 H 0.09 2.24 8.03 -2.39 -0.02 2.22 16 29 H 0.15 1.98 8.05 -2.91 -0.02 1.96 16 30 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 31 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.05 2.25 7.64 -2.39 -0.02 2.23 16 34 H 0.06 2.72 7.11 -2.39 -0.02 2.71 16 35 H 0.06 2.84 7.04 -2.38 -0.02 2.82 16 36 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.05 2.03 7.75 -2.38 -0.02 2.01 16 Total: -1.00 -67.10 318.72 0.91 -66.19 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.90 Total: 11.81 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 3.46 Total: -39.25 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -5.23 Total: -82.41 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.86 Total: 46.43 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.07 Total: -2.78 kcal Total: -67.10 0.91 -66.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170265799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.746 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.17 seconds