Wall clock time and date at job start Tue Mar 31 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99698 * 2 1 4 4 C 1.50693 * 109.47203 * 293.95162 * 3 2 1 5 5 H 1.08008 * 120.00336 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00269 * 180.02562 * 4 3 2 7 7 N 1.31506 * 119.99589 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99934 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47394 * 60.00153 * 8 6 4 10 10 H 1.48504 * 109.47068 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47298 * 300.00044 * 8 6 4 12 12 C 1.46900 * 110.99934 * 123.94864 * 2 1 3 13 13 H 1.09000 * 109.71300 * 186.58695 * 12 2 1 14 14 C 1.53333 * 109.68197 * 66.05171 * 12 2 1 15 15 C 1.52727 * 108.37838 * 170.37155 * 14 12 2 16 16 C 1.50636 * 110.58967 * 51.07372 * 15 14 12 17 17 C 1.38915 * 117.74478 * 162.67647 * 16 15 14 18 18 C 1.37936 * 120.57646 * 180.02562 * 17 16 15 19 19 C 1.38242 * 119.78702 * 359.48024 * 18 17 16 20 20 C 1.38058 * 119.75352 * 0.33065 * 19 18 17 21 21 Cl 1.73590 * 119.74105 * 180.02562 * 20 19 18 22 22 C 1.37642 * 122.56335 * 342.40159 * 16 15 14 23 23 C 1.50626 * 122.57703 * 0.45474 * 22 16 15 24 24 H 1.08998 * 109.47707 * 296.04360 * 1 2 3 25 25 H 1.09000 * 109.47483 * 56.05143 * 1 2 3 26 26 H 1.09000 * 109.47146 * 176.04672 * 1 2 3 27 27 H 1.08998 * 109.46774 * 53.95187 * 3 2 1 28 28 H 1.08997 * 109.47190 * 173.95126 * 3 2 1 29 29 H 0.97000 * 119.99581 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.68297 * 50.65065 * 14 12 2 31 31 H 1.09006 * 109.68178 * 290.09419 * 14 12 2 32 32 H 1.08997 * 109.25400 * 290.79072 * 15 14 12 33 33 H 1.09001 * 109.25850 * 171.35660 * 15 14 12 34 34 H 1.07999 * 119.71432 * 359.78706 * 17 16 15 35 35 H 1.08000 * 120.10964 * 179.71603 * 18 17 16 36 36 H 1.07991 * 120.12706 * 180.31145 * 19 18 17 37 37 H 1.09009 * 109.25300 * 222.11872 * 23 22 16 38 38 H 1.09004 * 109.22876 * 102.67491 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0276 3.3492 -1.5289 7 7 2.7135 4.0012 -0.6158 8 14 1.5826 4.1868 -3.1381 9 1 0.1053 4.2243 -3.2847 10 1 2.1148 5.5732 -3.1382 11 1 2.1733 3.4292 -4.2705 12 6 1.9954 -0.7659 1.1377 13 1 3.0788 -0.6559 1.1851 14 6 1.6334 -2.2469 0.9750 15 6 2.3910 -3.0469 2.0326 16 6 2.1829 -2.4485 3.3993 17 6 2.4830 -3.2369 4.5029 18 6 2.3137 -2.7478 5.7815 19 6 1.8515 -1.4583 5.9679 20 6 1.5561 -0.6714 4.8727 21 17 0.9764 0.9480 5.1072 22 6 1.7182 -1.1661 3.5836 23 6 1.3694 -0.2569 2.4345 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5609 1.9273 0.8309 28 1 3.0796 1.3445 0.1083 29 1 2.9880 4.9174 -0.7778 30 1 1.9212 -2.5881 -0.0194 31 1 0.5603 -2.3799 1.1130 32 1 3.4548 -3.0393 1.7953 33 1 2.0305 -4.0755 2.0320 34 1 2.8485 -4.2429 4.3588 35 1 2.5451 -3.3689 6.6342 36 1 1.7217 -1.0681 6.9665 37 1 1.7416 0.7461 2.6438 38 1 0.2858 -0.2215 2.3208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170918185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:13 Heat of formation + Delta-G solvation = 10.621767 kcal Electronic energy + Delta-G solvation = -19648.492104 eV Core-core repulsion = 16708.898948 eV Total energy + Delta-G solvation = -2939.593156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19446 -37.57614 -36.39231 -34.29685 -32.48914 -31.87360 -29.76845 -28.27081 -27.03374 -25.14810 -23.61936 -22.31690 -22.09578 -20.51253 -18.58923 -16.82146 -16.25516 -15.75168 -15.58313 -14.87083 -14.52311 -14.02787 -13.87117 -13.79068 -13.54871 -13.19584 -12.83212 -12.45438 -12.14424 -12.00864 -11.76344 -11.58990 -11.27388 -11.11605 -11.01247 -10.87095 -10.69270 -10.49272 -10.37476 -10.29935 -10.23560 -9.70400 -9.17145 -8.62368 -8.56928 -8.39208 -7.18336 -5.99511 -4.00787 1.13934 1.27067 2.24921 3.35240 3.39279 3.42107 3.57818 4.43749 4.62546 4.68175 4.87996 5.04296 5.11385 5.18096 5.22413 5.35962 5.37956 5.55571 5.66860 5.74427 5.80000 5.93100 6.00958 6.06585 6.11919 6.19152 6.25509 6.33977 6.40191 6.52894 6.60589 6.70529 6.80052 6.83417 7.33644 7.39979 7.82682 8.11912 8.23131 8.58496 9.06522 9.63108 11.11248 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.004785 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.821560 B = 5850.220248 C = 6660.035054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.508 4.508 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.087 3.913 13 H 0.078 0.922 14 C -0.111 4.111 15 C -0.078 4.078 16 C -0.065 4.065 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.039 4.039 21 Cl -0.067 7.067 22 C -0.050 4.050 23 C -0.123 4.123 24 H 0.017 0.983 25 H 0.073 0.927 26 H 0.046 0.954 27 H -0.006 1.006 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.085 0.915 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 -14.255 11.987 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.022 4.022 13 H 0.096 0.904 14 C -0.149 4.149 15 C -0.116 4.116 16 C -0.066 4.066 17 C -0.137 4.137 18 C -0.137 4.137 19 C -0.136 4.136 20 C -0.065 4.065 21 Cl -0.038 7.038 22 C -0.052 4.052 23 C -0.161 4.161 24 H 0.035 0.965 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.011 0.989 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.104 0.896 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.665 -14.133 11.579 18.346 hybrid contribution -0.486 1.214 0.178 1.319 sum -2.150 -12.920 11.756 17.600 Atomic orbital electron populations 1.22314 0.89285 0.99614 1.00647 1.62386 1.06880 1.17971 1.38044 1.19736 0.95312 0.81684 0.96602 1.21132 1.34833 0.96929 1.01754 0.91955 1.24978 0.95327 0.97359 0.96896 1.69950 1.38285 1.11464 1.34070 0.86581 0.78668 0.78353 0.83911 1.20327 1.21403 1.20180 1.21677 0.99409 0.93124 0.88018 0.90391 1.21616 0.99800 0.94847 0.98601 1.20504 1.01497 0.98903 0.90655 1.19669 0.98216 0.92677 0.96002 1.21228 1.00344 0.99968 0.92122 1.20936 1.00342 0.95096 0.97298 1.20931 1.00633 0.94229 0.97766 1.21078 1.03588 0.87325 0.94549 1.98377 1.87072 1.21292 1.97087 1.19628 0.97948 0.94358 0.93243 1.21399 1.02478 0.98762 0.93451 0.96461 0.90807 0.93531 0.98853 0.95378 0.92917 0.90355 0.92033 0.90236 0.90684 0.85754 0.85477 0.85329 0.89613 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 8.60 60.06 0.52 1.09 16 2 N -0.53 -11.25 4.71 -236.29 -1.11 -12.36 16 3 C 0.19 4.98 4.33 -4.98 -0.02 4.96 16 4 C -0.51 -14.27 8.46 -34.44 -0.29 -14.56 16 5 H 0.06 1.73 7.12 -52.48 -0.37 1.35 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.09 1.54 2.21 -67.68 -0.15 1.39 16 13 H 0.08 1.46 7.89 -51.93 -0.41 1.05 16 14 C -0.11 -1.56 4.92 -26.70 -0.13 -1.69 16 15 C -0.08 -0.91 5.67 -28.05 -0.16 -1.07 16 16 C -0.07 -0.84 5.74 -104.62 -0.60 -1.44 16 17 C -0.12 -1.28 9.61 -39.44 -0.38 -1.66 16 18 C -0.12 -1.23 10.05 -39.69 -0.40 -1.63 16 19 C -0.12 -1.38 9.82 -39.65 -0.39 -1.77 16 20 C -0.04 -0.55 6.31 -39.35 -0.25 -0.80 16 21 Cl -0.07 -1.00 27.26 -51.86 -1.41 -2.42 16 22 C -0.05 -0.75 5.74 -104.58 -0.60 -1.35 16 23 C -0.12 -2.09 3.68 -28.06 -0.10 -2.19 16 24 H 0.02 0.33 6.02 -51.93 -0.31 0.02 16 25 H 0.07 1.54 6.76 -51.93 -0.35 1.18 16 26 H 0.05 0.76 6.72 -51.93 -0.35 0.42 16 27 H -0.01 -0.18 7.32 -51.93 -0.38 -0.56 16 28 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.85 7.05 -51.93 -0.37 0.49 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.12 1.03 8.05 -52.49 -0.42 0.60 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.09 1.67 6.46 -51.92 -0.34 1.33 16 38 H 0.09 1.48 5.78 -51.93 -0.30 1.18 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -29.90 312.63 -10.41 -40.32 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.26 Total: -1.60 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.05 Total: -19.25 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.38 Total: -38.50 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.41 Total: -2.42 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.90 -10.41 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170918185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.939 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds