Wall clock time and date at job start Tue Mar 31 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99698 * 2 1 4 4 C 1.50693 * 109.47203 * 293.95162 * 3 2 1 5 5 H 1.08008 * 120.00336 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00269 * 180.02562 * 4 3 2 7 7 N 1.31506 * 119.99589 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 119.99934 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47394 * 60.00153 * 8 6 4 10 10 H 1.48504 * 109.47068 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47298 * 300.00044 * 8 6 4 12 12 C 1.46900 * 110.99934 * 123.94864 * 2 1 3 13 13 H 1.09000 * 109.71300 * 186.58695 * 12 2 1 14 14 C 1.53333 * 109.68197 * 66.05171 * 12 2 1 15 15 C 1.52727 * 108.37838 * 170.37155 * 14 12 2 16 16 C 1.50636 * 110.58967 * 51.07372 * 15 14 12 17 17 C 1.38915 * 117.74478 * 162.67647 * 16 15 14 18 18 C 1.37936 * 120.57646 * 180.02562 * 17 16 15 19 19 C 1.38242 * 119.78702 * 359.48024 * 18 17 16 20 20 C 1.38058 * 119.75352 * 0.33065 * 19 18 17 21 21 Cl 1.73590 * 119.74105 * 180.02562 * 20 19 18 22 22 C 1.37642 * 122.56335 * 342.40159 * 16 15 14 23 23 C 1.50626 * 122.57703 * 0.45474 * 22 16 15 24 24 H 1.08998 * 109.47707 * 296.04360 * 1 2 3 25 25 H 1.09000 * 109.47483 * 56.05143 * 1 2 3 26 26 H 1.09000 * 109.47146 * 176.04672 * 1 2 3 27 27 H 1.08998 * 109.46774 * 53.95187 * 3 2 1 28 28 H 1.08997 * 109.47190 * 173.95126 * 3 2 1 29 29 H 0.97000 * 119.99581 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.68297 * 50.65065 * 14 12 2 31 31 H 1.09006 * 109.68178 * 290.09419 * 14 12 2 32 32 H 1.08997 * 109.25400 * 290.79072 * 15 14 12 33 33 H 1.09001 * 109.25850 * 171.35660 * 15 14 12 34 34 H 1.07999 * 119.71432 * 359.78706 * 17 16 15 35 35 H 1.08000 * 120.10964 * 179.71603 * 18 17 16 36 36 H 1.07991 * 120.12706 * 180.31145 * 19 18 17 37 37 H 1.09009 * 109.25300 * 222.11872 * 23 22 16 38 38 H 1.09004 * 109.22876 * 102.67491 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0276 3.3492 -1.5289 7 7 2.7135 4.0012 -0.6158 8 14 1.5826 4.1868 -3.1381 9 1 0.1053 4.2243 -3.2847 10 1 2.1148 5.5732 -3.1382 11 1 2.1733 3.4292 -4.2705 12 6 1.9954 -0.7659 1.1377 13 1 3.0788 -0.6559 1.1851 14 6 1.6334 -2.2469 0.9750 15 6 2.3910 -3.0469 2.0326 16 6 2.1829 -2.4485 3.3993 17 6 2.4830 -3.2369 4.5029 18 6 2.3137 -2.7478 5.7815 19 6 1.8515 -1.4583 5.9679 20 6 1.5561 -0.6714 4.8727 21 17 0.9764 0.9480 5.1072 22 6 1.7182 -1.1661 3.5836 23 6 1.3694 -0.2569 2.4345 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5609 1.9273 0.8309 28 1 3.0796 1.3445 0.1083 29 1 2.9880 4.9174 -0.7778 30 1 1.9212 -2.5881 -0.0194 31 1 0.5603 -2.3799 1.1130 32 1 3.4548 -3.0393 1.7953 33 1 2.0305 -4.0755 2.0320 34 1 2.8485 -4.2429 4.3588 35 1 2.5451 -3.3689 6.6342 36 1 1.7217 -1.0681 6.9665 37 1 1.7416 0.7461 2.6438 38 1 0.2858 -0.2215 2.3208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170918185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:11 Heat of formation + Delta-G solvation = -6.380976 kcal Electronic energy + Delta-G solvation = -19649.229398 eV Core-core repulsion = 16708.898948 eV Total energy + Delta-G solvation = -2940.330450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.29295 -38.96756 -37.49990 -35.73942 -34.39056 -33.03051 -30.94845 -29.58960 -28.82998 -26.86417 -24.94290 -23.70686 -23.10901 -22.00618 -19.90520 -18.57873 -17.62545 -17.02155 -16.82690 -16.51271 -15.86361 -15.41424 -15.22441 -15.11146 -14.92388 -14.38341 -14.17926 -13.98631 -13.61433 -13.30264 -13.05312 -13.01073 -12.75607 -12.65665 -12.47811 -12.31188 -12.17135 -12.11428 -11.97478 -11.63990 -11.54408 -11.39353 -11.10056 -10.61029 -9.61656 -9.55536 -8.94829 -8.19819 -6.30438 0.19195 0.31949 1.19308 1.40264 1.43862 1.51689 2.40188 2.64793 3.12239 3.29534 3.63630 3.78616 3.89358 4.00509 4.10724 4.25554 4.38809 4.43088 4.49138 4.58410 4.63102 4.69335 4.75570 4.81756 4.96656 5.02086 5.06834 5.10720 5.18030 5.28835 5.30365 5.37669 5.40494 5.46544 5.62639 5.65536 5.92048 6.06172 6.34359 6.65845 6.86296 7.39327 8.91066 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.004785 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.821560 B = 5850.220248 C = 6660.035054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.536 5.536 3 C 0.211 3.789 4 C -0.525 4.525 5 H 0.065 0.935 6 C 0.001 3.999 7 N -0.936 5.936 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.085 3.915 13 H 0.059 0.941 14 C -0.101 4.101 15 C -0.073 4.073 16 C -0.073 4.073 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.120 4.120 20 C -0.058 4.058 21 Cl -0.089 7.089 22 C -0.080 4.080 23 C -0.107 4.107 24 H 0.013 0.987 25 H 0.055 0.945 26 H 0.082 0.918 27 H -0.038 1.038 28 H -0.004 1.004 29 H 0.263 0.737 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.047 0.953 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -17.250 12.236 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.258 5.258 3 C 0.084 3.916 4 C -0.563 4.563 5 H 0.083 0.917 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.191 1.191 12 C -0.025 4.025 13 H 0.077 0.923 14 C -0.139 4.139 15 C -0.110 4.110 16 C -0.073 4.073 17 C -0.129 4.129 18 C -0.125 4.125 19 C -0.139 4.139 20 C -0.085 4.085 21 Cl -0.060 7.060 22 C -0.081 4.081 23 C -0.146 4.146 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.100 0.900 27 H -0.021 1.021 28 H 0.014 0.986 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.163 0.837 37 H 0.065 0.935 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.877 -17.156 11.834 20.926 hybrid contribution -0.386 2.065 0.200 2.110 sum -2.263 -15.092 12.034 19.434 Atomic orbital electron populations 1.22293 0.87941 1.01451 0.99609 1.62321 1.08089 1.15095 1.40328 1.19316 0.93160 0.84203 0.94887 1.21475 1.34861 0.97551 1.02401 0.91701 1.25938 0.94990 0.98081 1.00718 1.70099 1.39369 1.11850 1.36327 0.85432 0.78837 0.77129 0.79199 1.19202 1.20957 1.19117 1.21762 0.98183 0.95344 0.87172 0.92308 1.21547 1.00591 0.91812 0.99952 1.20536 1.01614 0.99934 0.88895 1.19898 0.97914 0.91933 0.97592 1.21624 0.98833 1.01083 0.91359 1.21418 0.98088 0.94392 0.98581 1.21239 1.00118 0.94812 0.97714 1.21285 1.05018 0.86849 0.95332 1.98363 1.87462 1.23087 1.97117 1.19534 1.00750 0.95348 0.92463 1.21085 1.01497 0.97556 0.94413 0.96891 0.92587 0.89959 1.02070 0.98617 0.92783 0.90049 0.91452 0.89569 0.87187 0.82140 0.81687 0.83663 0.93465 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 8.60 127.69 1.10 2.48 16 2 N -0.54 -23.62 4.71 -901.50 -4.25 -27.86 16 3 C 0.21 11.65 4.33 85.55 0.37 12.02 16 4 C -0.52 -30.50 8.46 25.60 0.22 -30.29 16 5 H 0.06 3.66 7.12 -2.91 -0.02 3.64 16 6 C 0.00 0.03 5.46 84.66 0.46 0.49 16 7 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 8 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 C 0.08 3.08 2.21 44.94 0.10 3.18 16 13 H 0.06 2.33 7.89 -2.39 -0.02 2.32 16 14 C -0.10 -2.69 4.92 30.62 0.15 -2.54 16 15 C -0.07 -1.47 5.67 29.74 0.17 -1.30 16 16 C -0.07 -1.71 5.74 -19.86 -0.11 -1.83 16 17 C -0.11 -1.92 9.61 22.36 0.21 -1.70 16 18 C -0.11 -1.77 10.05 22.20 0.22 -1.54 16 19 C -0.12 -2.60 9.82 22.23 0.22 -2.38 16 20 C -0.06 -1.67 6.31 22.42 0.14 -1.53 16 21 Cl -0.09 -2.80 27.26 -2.72 -0.07 -2.88 16 22 C -0.08 -2.38 5.74 -19.84 -0.11 -2.50 16 23 C -0.11 -3.86 3.68 29.74 0.11 -3.75 16 24 H 0.01 0.51 6.02 -2.39 -0.01 0.50 16 25 H 0.06 2.38 6.76 -2.39 -0.02 2.36 16 26 H 0.08 2.62 6.72 -2.39 -0.02 2.60 16 27 H -0.04 -2.32 7.32 -2.39 -0.02 -2.34 16 28 H 0.00 -0.26 7.93 -2.39 -0.02 -0.28 16 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 1.72 7.05 -2.38 -0.02 1.70 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.11 1.53 8.13 -2.39 -0.02 1.51 16 34 H 0.16 1.64 8.05 -2.91 -0.02 1.62 16 35 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.15 2.57 8.06 -2.92 -0.02 2.55 16 37 H 0.05 2.02 6.46 -2.38 -0.02 2.01 16 38 H 0.08 2.80 5.78 -2.38 -0.01 2.79 16 Total: -1.00 -68.65 312.63 2.29 -66.37 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.05 Total: 6.17 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.24 Total: -31.18 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -3.96 Total: -85.67 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.07 Total: -2.88 kcal Total: -68.65 2.29 -66.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170918185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.984 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds