Wall clock time and date at job start Tue Mar 31 2020 01:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99923 * 2 1 4 4 C 1.50695 * 109.47310 * 293.95134 * 3 2 1 5 5 H 1.07999 * 120.00182 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99909 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00211 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99804 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.47556 * 89.99708 * 8 6 4 10 10 H 1.48512 * 109.46981 * 209.99514 * 8 6 4 11 11 H 1.48499 * 109.47354 * 329.99261 * 8 6 4 12 12 C 1.46903 * 110.99673 * 123.95504 * 2 1 3 13 13 H 1.08997 * 109.67255 * 295.54325 * 12 2 1 14 14 C 1.53322 * 109.67672 * 56.04660 * 12 2 1 15 15 C 1.52728 * 108.38737 * 189.52984 * 14 12 2 16 16 C 1.50631 * 110.57774 * 308.79373 * 15 14 12 17 17 C 1.38915 * 117.75061 * 197.79421 * 16 15 14 18 18 C 1.37943 * 120.57014 * 180.29882 * 17 16 15 19 19 C 1.38243 * 119.78324 * 0.28455 * 18 17 16 20 20 C 1.38043 * 119.76159 * 359.85446 * 19 18 17 21 21 Cl 1.73606 * 119.74278 * 179.97438 * 20 19 18 22 22 C 1.37644 * 122.55241 * 18.34702 * 16 15 14 23 23 C 1.50625 * 122.55997 * 358.85862 * 22 16 15 24 24 H 1.08994 * 109.47223 * 296.04929 * 1 2 3 25 25 H 1.09004 * 109.46843 * 56.04573 * 1 2 3 26 26 H 1.08998 * 109.47622 * 176.04470 * 1 2 3 27 27 H 1.09006 * 109.46843 * 53.95775 * 3 2 1 28 28 H 1.09005 * 109.46644 * 173.94919 * 3 2 1 29 29 H 0.97000 * 120.00606 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.68099 * 69.80213 * 14 12 2 31 31 H 1.09003 * 109.68081 * 309.25640 * 14 12 2 32 32 H 1.08996 * 109.26098 * 188.50894 * 15 14 12 33 33 H 1.09009 * 109.22708 * 69.05247 * 15 14 12 34 34 H 1.08002 * 119.71713 * 0.58165 * 17 16 15 35 35 H 1.08001 * 120.10970 * 180.26450 * 18 17 16 36 36 H 1.08002 * 120.11915 * 179.88410 * 19 18 17 37 37 H 1.08997 * 109.25157 * 138.50014 * 23 22 16 38 38 H 1.09004 * 109.25126 * 257.91987 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 1.7137 3.9394 -2.6613 8 14 3.0000 4.2761 -0.2307 9 1 4.4523 4.0636 -0.4555 10 1 2.6918 5.7260 -0.3224 11 1 2.6293 3.7755 1.1173 12 6 1.9954 -0.7660 1.1376 13 1 1.7137 -0.2778 2.0705 14 6 1.4276 -2.1899 1.1082 15 6 1.7965 -2.8829 2.4183 16 6 3.2730 -2.7543 2.6877 17 6 3.8402 -3.6239 3.6106 18 6 5.1858 -3.5533 3.9061 19 6 5.9767 -2.6055 3.2837 20 6 5.4149 -1.7383 2.3684 21 17 6.4085 -0.5479 1.5875 22 6 4.0597 -1.8109 2.0667 23 6 3.5151 -0.8449 1.0473 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 1.5611 1.9273 0.8310 28 1 3.0798 1.3443 0.1083 29 1 1.9882 4.8555 -2.8233 30 1 1.8558 -2.7386 0.2693 31 1 0.3430 -2.1506 1.0064 32 1 1.5338 -3.9387 2.3530 33 1 1.2406 -2.4240 3.2360 34 1 3.2234 -4.3647 4.0975 35 1 5.6199 -4.2359 4.6217 36 1 7.0304 -2.5442 3.5125 37 1 3.9446 0.1416 1.2217 38 1 3.7893 -1.1841 0.0484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170918188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:17 Heat of formation + Delta-G solvation = 15.285186 kcal Electronic energy + Delta-G solvation = -19690.761695 eV Core-core repulsion = 16751.370760 eV Total energy + Delta-G solvation = -2939.390935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21900 -37.60573 -36.43409 -34.42568 -32.39966 -32.16437 -29.91823 -28.62475 -27.75996 -24.78467 -23.51892 -22.29827 -21.96869 -20.36681 -19.00958 -17.02527 -16.59768 -15.80091 -15.62183 -14.75063 -14.56461 -14.43766 -13.93275 -13.73263 -13.52398 -13.13499 -12.85261 -12.65179 -12.44195 -12.25240 -11.84297 -11.67080 -11.41189 -11.22061 -11.17644 -10.95409 -10.75247 -10.71039 -10.43445 -10.32241 -9.86423 -9.75199 -9.23922 -8.68056 -8.62034 -8.53336 -7.36289 -6.03406 -4.00112 1.08426 1.21347 2.19949 3.30044 3.37279 3.39893 3.52283 4.43649 4.48308 4.54416 4.77250 4.93059 5.05724 5.08409 5.21331 5.27581 5.29145 5.48337 5.60762 5.65427 5.71892 5.84148 5.86857 6.03212 6.07434 6.16758 6.18523 6.24888 6.33572 6.35505 6.53970 6.59967 6.73285 6.78195 6.90694 7.01607 7.62235 7.91940 8.06982 8.67895 9.05333 9.58853 11.09746 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.005872 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.781321 B = 4767.574864 C = 5972.553948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.526 5.526 3 C 0.158 3.842 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.869 3.131 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.085 3.915 13 H 0.032 0.968 14 C -0.116 4.116 15 C -0.078 4.078 16 C -0.066 4.066 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.038 4.038 21 Cl -0.066 7.066 22 C -0.053 4.053 23 C -0.081 4.081 24 H 0.010 0.990 25 H 0.080 0.920 26 H 0.053 0.947 27 H -0.013 1.013 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.825 -15.692 13.892 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.250 5.250 3 C 0.032 3.968 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.697 3.303 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.024 4.024 13 H 0.050 0.950 14 C -0.154 4.154 15 C -0.115 4.115 16 C -0.066 4.066 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.134 4.134 20 C -0.064 4.064 21 Cl -0.037 7.037 22 C -0.054 4.054 23 C -0.118 4.118 24 H 0.029 0.971 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.004 0.996 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.088 -15.620 13.279 21.124 hybrid contribution 0.538 1.180 1.363 1.881 sum 5.625 -14.441 14.642 21.320 Atomic orbital electron populations 1.22305 0.88217 1.00083 1.00832 1.61977 1.07306 1.16328 1.39342 1.20246 0.95246 0.84101 0.97207 1.21031 1.35512 0.97137 1.00850 0.90088 1.24869 0.95776 0.97347 0.95182 1.69886 1.46986 1.13270 1.23846 0.86946 0.81091 0.79382 0.82924 1.20047 1.21177 1.19243 1.21451 0.93718 0.94035 0.93168 0.94998 1.21713 1.01443 0.95518 0.96721 1.20508 0.90942 1.01282 0.98810 1.19642 0.96139 0.94727 0.96136 1.21229 0.95216 0.99257 0.97897 1.20947 0.93828 0.98594 1.00235 1.20936 1.00440 0.95440 0.96600 1.21030 0.91729 0.94879 0.98806 1.98384 1.69116 1.56243 1.79941 1.19639 0.91209 0.96819 0.97757 1.20607 0.95587 0.97924 0.97670 0.97126 0.90097 0.92869 0.99555 0.95421 0.92701 0.90857 0.90677 0.90475 0.90570 0.85746 0.85423 0.85233 0.89776 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 8.95 60.07 0.54 1.17 16 2 N -0.53 -10.88 4.63 -236.47 -1.09 -11.98 16 3 C 0.16 3.86 3.62 -4.98 -0.02 3.84 16 4 C -0.51 -14.44 9.01 -34.44 -0.31 -14.75 16 5 H 0.08 2.50 7.37 -52.49 -0.39 2.11 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 8 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 12 C 0.09 1.45 1.93 -67.83 -0.13 1.32 16 13 H 0.03 0.57 8.10 -51.93 -0.42 0.14 16 14 C -0.12 -1.57 5.18 -26.70 -0.14 -1.71 16 15 C -0.08 -0.86 5.67 -28.06 -0.16 -1.02 16 16 C -0.07 -0.82 5.74 -104.62 -0.60 -1.42 16 17 C -0.12 -1.22 9.61 -39.44 -0.38 -1.59 16 18 C -0.12 -1.16 10.05 -39.69 -0.40 -1.56 16 19 C -0.12 -1.31 9.82 -39.65 -0.39 -1.70 16 20 C -0.04 -0.52 6.31 -39.36 -0.25 -0.77 16 21 Cl -0.07 -0.96 27.26 -51.86 -1.41 -2.37 16 22 C -0.05 -0.77 5.74 -104.58 -0.60 -1.37 16 23 C -0.08 -1.36 3.83 -28.20 -0.11 -1.47 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 26 H 0.05 0.83 6.06 -51.93 -0.31 0.52 16 27 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 28 H 0.03 0.68 5.50 -51.93 -0.29 0.39 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 31 H 0.07 0.96 5.89 -51.93 -0.31 0.65 16 32 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 34 H 0.12 0.97 8.05 -52.49 -0.42 0.54 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.08 1.55 5.80 -51.93 -0.30 1.25 16 38 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -30.71 310.79 -10.04 -40.75 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -5.28 Total: -2.19 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -3.04 Total: -19.09 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.32 Total: -38.94 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.41 Total: -2.37 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.71 -10.04 -40.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170918188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.036 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds