Wall clock time and date at job start Tue Mar 31 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99923 * 2 1 4 4 C 1.50695 * 109.47310 * 293.95134 * 3 2 1 5 5 H 1.07999 * 120.00182 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99909 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00211 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99804 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.47556 * 89.99708 * 8 6 4 10 10 H 1.48512 * 109.46981 * 209.99514 * 8 6 4 11 11 H 1.48499 * 109.47354 * 329.99261 * 8 6 4 12 12 C 1.46903 * 110.99673 * 123.95504 * 2 1 3 13 13 H 1.08997 * 109.67255 * 295.54325 * 12 2 1 14 14 C 1.53322 * 109.67672 * 56.04660 * 12 2 1 15 15 C 1.52728 * 108.38737 * 189.52984 * 14 12 2 16 16 C 1.50631 * 110.57774 * 308.79373 * 15 14 12 17 17 C 1.38915 * 117.75061 * 197.79421 * 16 15 14 18 18 C 1.37943 * 120.57014 * 180.29882 * 17 16 15 19 19 C 1.38243 * 119.78324 * 0.28455 * 18 17 16 20 20 C 1.38043 * 119.76159 * 359.85446 * 19 18 17 21 21 Cl 1.73606 * 119.74278 * 179.97438 * 20 19 18 22 22 C 1.37644 * 122.55241 * 18.34702 * 16 15 14 23 23 C 1.50625 * 122.55997 * 358.85862 * 22 16 15 24 24 H 1.08994 * 109.47223 * 296.04929 * 1 2 3 25 25 H 1.09004 * 109.46843 * 56.04573 * 1 2 3 26 26 H 1.08998 * 109.47622 * 176.04470 * 1 2 3 27 27 H 1.09006 * 109.46843 * 53.95775 * 3 2 1 28 28 H 1.09005 * 109.46644 * 173.94919 * 3 2 1 29 29 H 0.97000 * 120.00606 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.68099 * 69.80213 * 14 12 2 31 31 H 1.09003 * 109.68081 * 309.25640 * 14 12 2 32 32 H 1.08996 * 109.26098 * 188.50894 * 15 14 12 33 33 H 1.09009 * 109.22708 * 69.05247 * 15 14 12 34 34 H 1.08002 * 119.71713 * 0.58165 * 17 16 15 35 35 H 1.08001 * 120.10970 * 180.26450 * 18 17 16 36 36 H 1.08002 * 120.11915 * 179.88410 * 19 18 17 37 37 H 1.08997 * 109.25157 * 138.50014 * 23 22 16 38 38 H 1.09004 * 109.25126 * 257.91987 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0269 3.3495 -1.5284 7 7 1.7137 3.9394 -2.6613 8 14 3.0000 4.2761 -0.2307 9 1 4.4523 4.0636 -0.4555 10 1 2.6918 5.7260 -0.3224 11 1 2.6293 3.7755 1.1173 12 6 1.9954 -0.7660 1.1376 13 1 1.7137 -0.2778 2.0705 14 6 1.4276 -2.1899 1.1082 15 6 1.7965 -2.8829 2.4183 16 6 3.2730 -2.7543 2.6877 17 6 3.8402 -3.6239 3.6106 18 6 5.1858 -3.5533 3.9061 19 6 5.9767 -2.6055 3.2837 20 6 5.4149 -1.7383 2.3684 21 17 6.4085 -0.5479 1.5875 22 6 4.0597 -1.8109 2.0667 23 6 3.5151 -0.8449 1.0473 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 1.5611 1.9273 0.8310 28 1 3.0798 1.3443 0.1083 29 1 1.9882 4.8555 -2.8233 30 1 1.8558 -2.7386 0.2693 31 1 0.3430 -2.1506 1.0064 32 1 1.5338 -3.9387 2.3530 33 1 1.2406 -2.4240 3.2360 34 1 3.2234 -4.3647 4.0975 35 1 5.6199 -4.2359 4.6217 36 1 7.0304 -2.5442 3.5125 37 1 3.9446 0.1416 1.2217 38 1 3.7893 -1.1841 0.0484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170918188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:16 Heat of formation + Delta-G solvation = -2.970978 kcal Electronic energy + Delta-G solvation = -19691.553342 eV Core-core repulsion = 16751.370760 eV Total energy + Delta-G solvation = -2940.182581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23351 -38.94493 -37.48291 -35.78116 -34.41740 -33.22587 -31.15869 -29.72302 -29.52841 -26.38083 -24.70115 -23.52435 -23.04568 -21.91750 -20.25223 -19.02598 -17.68252 -16.96922 -16.72205 -16.51242 -15.82374 -15.57753 -15.45165 -15.08385 -14.73474 -14.50044 -14.18206 -14.10005 -13.86096 -13.48832 -13.22722 -12.98997 -12.80457 -12.58250 -12.45142 -12.27949 -12.20826 -12.08030 -11.91985 -11.79093 -11.48161 -11.31490 -11.12179 -10.79106 -9.58732 -9.54960 -9.03300 -8.31027 -6.32832 0.20074 0.32530 1.20477 1.29419 1.29936 1.40258 2.30044 2.65662 3.01842 3.11575 3.57700 3.78616 3.99255 4.01454 4.08254 4.24522 4.32659 4.42350 4.48226 4.57999 4.62052 4.68281 4.74528 4.84114 4.88292 4.92721 4.98527 5.04591 5.05758 5.18709 5.26210 5.34939 5.38397 5.46605 5.54093 5.62498 5.91854 5.99547 6.37461 6.64858 6.73299 7.30405 8.85558 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.005872 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.781321 B = 4767.574864 C = 5972.553948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.542 5.542 3 C 0.171 3.829 4 C -0.512 4.512 5 H 0.042 0.958 6 C 0.014 3.986 7 N -0.945 5.945 8 Si 0.935 3.065 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.256 1.256 12 C 0.085 3.915 13 H 0.029 0.971 14 C -0.110 4.110 15 C -0.072 4.072 16 C -0.074 4.074 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.119 4.119 20 C -0.056 4.056 21 Cl -0.087 7.087 22 C -0.080 4.080 23 C -0.072 4.072 24 H 0.017 0.983 25 H 0.048 0.952 26 H 0.089 0.911 27 H -0.019 1.019 28 H 0.026 0.974 29 H 0.267 0.733 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.058 0.942 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 -18.194 17.175 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.266 5.266 3 C 0.044 3.956 4 C -0.551 4.551 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.759 3.241 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.180 1.180 12 C -0.024 4.024 13 H 0.047 0.953 14 C -0.147 4.147 15 C -0.109 4.109 16 C -0.074 4.074 17 C -0.129 4.129 18 C -0.125 4.125 19 C -0.138 4.138 20 C -0.083 4.083 21 Cl -0.059 7.059 22 C -0.081 4.081 23 C -0.110 4.110 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.108 0.892 27 H -0.002 1.002 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.164 0.836 37 H 0.077 0.923 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.388 -18.145 16.572 25.157 hybrid contribution 0.412 1.835 0.325 1.908 sum 5.801 -16.311 16.897 24.190 Atomic orbital electron populations 1.22278 0.87164 1.01882 0.99696 1.61886 1.08439 1.14326 1.41930 1.19945 0.95110 0.86061 0.94506 1.21259 1.34687 0.97389 1.01726 0.93940 1.25719 0.96920 0.98383 0.97368 1.70025 1.48612 1.13912 1.26039 0.85896 0.79621 0.78153 0.80460 1.19295 1.20227 1.17954 1.21572 0.93972 0.95576 0.91238 0.95328 1.21674 1.01718 0.92948 0.98389 1.20541 0.90205 1.02868 0.97295 1.19884 0.96710 0.94465 0.96376 1.21615 0.95794 0.98816 0.96664 1.21417 0.93622 0.97847 0.99613 1.21236 1.01617 0.95079 0.95830 1.21228 0.91526 0.95500 1.00010 1.98370 1.69594 1.57347 1.80553 1.19522 0.91988 0.97890 0.98735 1.20389 0.95418 0.97498 0.97650 0.96399 0.93338 0.89246 1.00175 0.95619 0.92409 0.91559 0.89610 0.87317 0.89354 0.82238 0.81784 0.83622 0.92338 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 8.95 127.69 1.14 2.56 16 2 N -0.54 -22.84 4.63 -902.06 -4.17 -27.02 16 3 C 0.17 8.56 3.62 85.56 0.31 8.87 16 4 C -0.51 -30.44 9.01 25.60 0.23 -30.21 16 5 H 0.04 2.78 7.37 -2.91 -0.02 2.76 16 6 C 0.01 0.82 5.47 84.66 0.46 1.28 16 7 N -0.94 -60.16 13.96 21.45 0.30 -59.87 16 8 Si 0.93 45.86 27.47 68.60 1.88 47.74 16 9 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.26 -11.93 6.54 99.48 0.65 -11.28 16 12 C 0.08 2.86 1.93 44.84 0.09 2.94 16 13 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 14 C -0.11 -2.73 5.18 30.61 0.16 -2.57 16 15 C -0.07 -1.31 5.67 29.74 0.17 -1.15 16 16 C -0.07 -1.61 5.74 -19.86 -0.11 -1.72 16 17 C -0.11 -1.75 9.61 22.36 0.21 -1.53 16 18 C -0.11 -1.62 10.05 22.20 0.22 -1.39 16 19 C -0.12 -2.38 9.82 22.22 0.22 -2.16 16 20 C -0.06 -1.50 6.31 22.41 0.14 -1.36 16 21 Cl -0.09 -2.59 27.26 -2.72 -0.07 -2.66 16 22 C -0.08 -2.25 5.74 -19.84 -0.11 -2.36 16 23 C -0.07 -2.48 3.83 29.64 0.11 -2.37 16 24 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 2.12 6.76 -2.39 -0.02 2.11 16 26 H 0.09 2.68 6.06 -2.39 -0.01 2.66 16 27 H -0.02 -0.98 7.18 -2.38 -0.02 -1.00 16 28 H 0.03 1.30 5.50 -2.38 -0.01 1.29 16 29 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16 31 H 0.09 1.93 5.89 -2.39 -0.01 1.92 16 32 H 0.11 1.36 8.12 -2.39 -0.02 1.34 16 33 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.16 1.42 8.05 -2.91 -0.02 1.40 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 37 H 0.06 2.25 5.80 -2.39 -0.01 2.23 16 38 H 0.07 2.67 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -70.09 310.79 2.18 -67.92 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.00 Total: 5.05 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 3.24 Total: -31.17 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -3.87 Total: -86.88 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Atomic # 17 Polarization: -2.59 SS G_CDS: -0.07 Total: -2.66 kcal Total: -70.09 2.18 -67.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170918188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.947 kcal (2) G-P(sol) polarization free energy of solvation -70.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds