Wall clock time and date at job start Tue Mar 31 2020 01:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00090 * 2 1 4 4 C 1.50697 * 109.46913 * 293.95518 * 3 2 1 5 5 H 1.07997 * 120.00438 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00157 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00095 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.47176 * 89.99263 * 8 6 4 10 10 H 1.48497 * 109.47152 * 209.99869 * 8 6 4 11 11 H 1.48500 * 109.46879 * 329.99744 * 8 6 4 12 12 C 1.46896 * 110.99958 * 123.95944 * 2 1 3 13 13 H 1.08999 * 109.70659 * 186.57823 * 12 2 1 14 14 C 1.53327 * 109.68298 * 66.04271 * 12 2 1 15 15 C 1.52747 * 108.36542 * 170.37632 * 14 12 2 16 16 C 1.50629 * 110.56972 * 51.13457 * 15 14 12 17 17 C 1.39024 * 117.74447 * 162.38051 * 16 15 14 18 18 Cl 1.73600 * 119.74338 * 359.73159 * 17 16 15 19 19 C 1.38051 * 120.51654 * 179.75225 * 17 16 15 20 20 C 1.38246 * 119.75660 * 359.97438 * 19 17 16 21 21 C 1.37936 * 119.78362 * 0.23944 * 20 19 17 22 22 C 1.37645 * 122.57711 * 342.30048 * 16 15 14 23 23 C 1.50631 * 122.56479 * 0.50797 * 22 16 15 24 24 H 1.09006 * 109.46561 * 296.04445 * 1 2 3 25 25 H 1.08992 * 109.47307 * 56.04380 * 1 2 3 26 26 H 1.08996 * 109.47409 * 176.04503 * 1 2 3 27 27 H 1.08998 * 109.47358 * 53.95792 * 3 2 1 28 28 H 1.08997 * 109.46706 * 173.95963 * 3 2 1 29 29 H 0.97004 * 120.00574 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.68717 * 50.65832 * 14 12 2 31 31 H 1.09003 * 109.68973 * 290.09521 * 14 12 2 32 32 H 1.08993 * 109.25280 * 290.85351 * 15 14 12 33 33 H 1.08993 * 109.25755 * 171.41562 * 15 14 12 34 34 H 1.08000 * 120.12404 * 179.97438 * 19 17 16 35 35 H 1.08002 * 120.10953 * 180.09175 * 20 19 17 36 36 H 1.08005 * 119.71186 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.25330 * 102.72933 * 23 22 16 38 38 H 1.09008 * 109.24665 * 222.14708 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0268 3.3495 -1.5284 7 7 1.7144 3.9390 -2.6617 8 14 3.0000 4.2761 -0.2309 9 1 4.4525 4.0635 -0.4558 10 1 2.6919 5.7259 -0.3225 11 1 2.6294 3.7755 1.1172 12 6 1.9955 -0.7661 1.1375 13 1 3.0789 -0.6562 1.1848 14 6 1.6332 -2.2470 0.9746 15 6 2.3911 -3.0469 2.0325 16 6 2.1814 -2.4490 3.3990 17 6 2.4757 -3.2402 4.5037 18 17 3.0562 -4.8599 4.2730 19 6 2.3094 -2.7480 5.7827 20 6 1.8473 -1.4581 5.9668 21 6 1.5508 -0.6737 4.8717 22 6 1.7175 -1.1663 3.5835 23 6 1.3699 -0.2567 2.4343 24 1 -0.3633 0.4513 0.9234 25 1 -0.3633 0.5740 -0.8523 26 1 -0.3634 -1.0252 -0.0709 27 1 1.5612 1.9273 0.8309 28 1 3.0797 1.3443 0.1081 29 1 1.9890 4.8552 -2.8238 30 1 1.9210 -2.5883 -0.0198 31 1 0.5602 -2.3800 1.1127 32 1 3.4549 -3.0384 1.7957 33 1 2.0313 -4.0758 2.0312 34 1 2.5396 -3.3682 6.6363 35 1 1.7165 -1.0667 6.9649 36 1 1.1902 0.3340 5.0169 37 1 0.2865 -0.2195 2.3203 38 1 1.7432 0.7458 2.6439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171033187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:25 Heat of formation + Delta-G solvation = 14.541168 kcal Electronic energy + Delta-G solvation = -19575.767252 eV Core-core repulsion = 16636.344054 eV Total energy + Delta-G solvation = -2939.423198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31231 -37.78525 -36.53932 -34.48437 -32.51186 -31.95975 -29.89384 -28.54420 -27.55270 -25.26678 -23.66650 -22.28816 -22.13747 -20.37850 -18.72892 -17.09780 -16.62280 -15.88320 -15.65813 -14.88575 -14.61571 -14.25218 -14.03536 -13.72594 -13.63108 -13.38440 -13.00405 -12.57819 -12.40938 -12.11341 -11.90071 -11.75065 -11.49515 -11.25783 -11.15205 -11.01420 -10.95949 -10.59880 -10.48131 -10.32895 -10.09857 -9.78959 -9.29816 -8.72323 -8.69379 -8.57341 -7.35900 -6.06290 -4.03519 1.03820 1.17115 2.02068 3.26939 3.34516 3.35409 3.48607 4.40389 4.48642 4.56974 4.79306 4.90028 5.02672 5.05681 5.18422 5.23965 5.26915 5.46290 5.55389 5.61951 5.68638 5.85042 5.90530 5.96784 6.01915 6.05683 6.14698 6.24516 6.25707 6.43777 6.52587 6.54322 6.68099 6.72848 6.87409 6.99276 7.58235 7.89134 8.04017 8.64735 9.02556 9.55488 11.06855 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.004346 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.274816 B = 6441.663886 C = 6939.622706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.521 5.521 3 C 0.160 3.840 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.873 3.127 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.083 3.917 13 H 0.079 0.921 14 C -0.108 4.108 15 C -0.083 4.083 16 C -0.065 4.065 17 C -0.037 4.037 18 Cl -0.075 7.075 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.050 4.050 23 C -0.121 4.121 24 H 0.017 0.983 25 H 0.079 0.921 26 H 0.050 0.950 27 H -0.010 1.010 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 -14.131 16.849 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.243 5.243 3 C 0.034 3.966 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.026 4.026 13 H 0.097 0.903 14 C -0.146 4.146 15 C -0.120 4.120 16 C -0.065 4.065 17 C -0.063 4.063 18 Cl -0.046 7.046 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.051 4.051 23 C -0.160 4.160 24 H 0.035 0.965 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.007 0.993 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.106 0.894 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.421 -14.318 16.260 21.669 hybrid contribution 0.358 0.976 1.546 1.863 sum 0.779 -13.342 17.806 22.264 Atomic orbital electron populations 1.22354 0.88532 1.00152 1.00892 1.62195 1.07404 1.16476 1.38223 1.20196 0.94869 0.84278 0.97246 1.21045 1.35599 0.97172 1.00923 0.90104 1.24893 0.95781 0.97368 0.95235 1.69890 1.46924 1.13294 1.23837 0.86892 0.80982 0.79319 0.82737 1.20135 1.21221 1.19328 1.21747 0.99456 0.93563 0.87877 0.90293 1.21594 0.99895 0.94340 0.98770 1.20571 1.01693 0.99373 0.90356 1.19557 0.99031 0.93128 0.94833 1.20967 1.03925 0.86796 0.94624 1.98348 1.87211 1.21636 1.97423 1.20911 1.01217 0.96415 0.95256 1.20979 0.99558 0.93522 0.99078 1.21337 0.99957 1.00307 0.91972 1.19679 0.97159 0.93176 0.95054 1.21361 1.02637 0.98204 0.93789 0.96476 0.90186 0.93122 0.99272 0.95928 0.92669 0.90092 0.91857 0.90072 0.90232 0.85279 0.85338 0.85619 0.89418 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.60 60.07 0.52 1.05 16 2 N -0.52 -10.45 4.71 -236.31 -1.11 -11.56 16 3 C 0.16 3.79 3.40 -4.98 -0.02 3.77 16 4 C -0.51 -14.25 9.01 -34.44 -0.31 -14.56 16 5 H 0.08 2.46 7.37 -52.49 -0.39 2.08 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 8 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 12 C 0.08 1.36 2.21 -67.69 -0.15 1.21 16 13 H 0.08 1.34 7.89 -51.93 -0.41 0.93 16 14 C -0.11 -1.48 4.92 -26.69 -0.13 -1.61 16 15 C -0.08 -1.01 5.00 -28.05 -0.14 -1.15 16 16 C -0.06 -0.83 5.74 -104.58 -0.60 -1.43 16 17 C -0.04 -0.43 6.31 -39.36 -0.25 -0.68 16 18 Cl -0.08 -0.81 27.26 -51.86 -1.41 -2.22 16 19 C -0.12 -1.26 9.82 -39.65 -0.39 -1.64 16 20 C -0.11 -1.15 10.05 -39.69 -0.40 -1.55 16 21 C -0.12 -1.38 9.61 -39.44 -0.38 -1.76 16 22 C -0.05 -0.66 5.74 -104.62 -0.60 -1.26 16 23 C -0.12 -1.81 4.35 -28.06 -0.12 -1.93 16 24 H 0.02 0.30 6.02 -51.93 -0.31 -0.02 16 25 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 26 H 0.05 0.80 6.72 -51.93 -0.35 0.45 16 27 H -0.01 -0.25 6.37 -51.93 -0.33 -0.58 16 28 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.85 7.05 -51.93 -0.37 0.48 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.89 7.23 -51.93 -0.38 0.51 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.31 8.05 -52.48 -0.42 0.89 16 37 H 0.09 1.30 5.77 -51.93 -0.30 1.00 16 38 H 0.08 1.24 7.36 -51.92 -0.38 0.86 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -29.68 309.03 -10.06 -39.74 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.23 Total: -0.93 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -3.07 Total: -19.68 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.34 Total: -38.17 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.41 Total: -2.22 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.68 -10.06 -39.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171033187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.277 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds