Wall clock time and date at job start Tue Mar 31 2020 01:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00090 * 2 1 4 4 C 1.50697 * 109.46913 * 293.95518 * 3 2 1 5 5 H 1.07997 * 120.00438 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99720 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00157 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 120.00095 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.47176 * 89.99263 * 8 6 4 10 10 H 1.48497 * 109.47152 * 209.99869 * 8 6 4 11 11 H 1.48500 * 109.46879 * 329.99744 * 8 6 4 12 12 C 1.46896 * 110.99958 * 123.95944 * 2 1 3 13 13 H 1.08999 * 109.70659 * 186.57823 * 12 2 1 14 14 C 1.53327 * 109.68298 * 66.04271 * 12 2 1 15 15 C 1.52747 * 108.36542 * 170.37632 * 14 12 2 16 16 C 1.50629 * 110.56972 * 51.13457 * 15 14 12 17 17 C 1.39024 * 117.74447 * 162.38051 * 16 15 14 18 18 Cl 1.73600 * 119.74338 * 359.73159 * 17 16 15 19 19 C 1.38051 * 120.51654 * 179.75225 * 17 16 15 20 20 C 1.38246 * 119.75660 * 359.97438 * 19 17 16 21 21 C 1.37936 * 119.78362 * 0.23944 * 20 19 17 22 22 C 1.37645 * 122.57711 * 342.30048 * 16 15 14 23 23 C 1.50631 * 122.56479 * 0.50797 * 22 16 15 24 24 H 1.09006 * 109.46561 * 296.04445 * 1 2 3 25 25 H 1.08992 * 109.47307 * 56.04380 * 1 2 3 26 26 H 1.08996 * 109.47409 * 176.04503 * 1 2 3 27 27 H 1.08998 * 109.47358 * 53.95792 * 3 2 1 28 28 H 1.08997 * 109.46706 * 173.95963 * 3 2 1 29 29 H 0.97004 * 120.00574 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.68717 * 50.65832 * 14 12 2 31 31 H 1.09003 * 109.68973 * 290.09521 * 14 12 2 32 32 H 1.08993 * 109.25280 * 290.85351 * 15 14 12 33 33 H 1.08993 * 109.25755 * 171.41562 * 15 14 12 34 34 H 1.08000 * 120.12404 * 179.97438 * 19 17 16 35 35 H 1.08002 * 120.10953 * 180.09175 * 20 19 17 36 36 H 1.08005 * 119.71186 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.25330 * 102.72933 * 23 22 16 38 38 H 1.09008 * 109.24665 * 222.14708 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0268 3.3495 -1.5284 7 7 1.7144 3.9390 -2.6617 8 14 3.0000 4.2761 -0.2309 9 1 4.4525 4.0635 -0.4558 10 1 2.6919 5.7259 -0.3225 11 1 2.6294 3.7755 1.1172 12 6 1.9955 -0.7661 1.1375 13 1 3.0789 -0.6562 1.1848 14 6 1.6332 -2.2470 0.9746 15 6 2.3911 -3.0469 2.0325 16 6 2.1814 -2.4490 3.3990 17 6 2.4757 -3.2402 4.5037 18 17 3.0562 -4.8599 4.2730 19 6 2.3094 -2.7480 5.7827 20 6 1.8473 -1.4581 5.9668 21 6 1.5508 -0.6737 4.8717 22 6 1.7175 -1.1663 3.5835 23 6 1.3699 -0.2567 2.4343 24 1 -0.3633 0.4513 0.9234 25 1 -0.3633 0.5740 -0.8523 26 1 -0.3634 -1.0252 -0.0709 27 1 1.5612 1.9273 0.8309 28 1 3.0797 1.3443 0.1081 29 1 1.9890 4.8552 -2.8238 30 1 1.9210 -2.5883 -0.0198 31 1 0.5602 -2.3800 1.1127 32 1 3.4549 -3.0384 1.7957 33 1 2.0313 -4.0758 2.0312 34 1 2.5396 -3.3682 6.6363 35 1 1.7165 -1.0667 6.9649 36 1 1.1902 0.3340 5.0169 37 1 0.2865 -0.2195 2.3203 38 1 1.7432 0.7458 2.6439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171033187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:25 Heat of formation + Delta-G solvation = -2.353057 kcal Electronic energy + Delta-G solvation = -19576.499840 eV Core-core repulsion = 16636.344054 eV Total energy + Delta-G solvation = -2940.155786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32410 -39.05029 -37.40790 -35.80728 -34.44007 -33.03421 -31.09086 -29.85220 -29.06949 -26.83374 -24.85398 -23.52875 -23.14787 -21.88113 -19.94054 -19.03065 -17.67640 -16.91711 -16.86609 -16.45065 -15.92248 -15.49106 -15.37658 -15.08638 -14.83548 -14.61129 -14.36342 -14.02147 -13.75589 -13.35136 -13.04421 -12.97340 -12.73317 -12.67758 -12.48684 -12.38133 -12.13305 -12.03419 -11.90966 -11.72723 -11.51282 -11.36499 -11.24249 -10.77397 -9.62619 -9.57542 -8.93530 -8.27497 -6.30432 0.17255 0.29998 1.17197 1.34729 1.35265 1.45764 2.34331 2.61885 3.05610 3.19725 3.63528 3.74559 3.86797 3.95945 4.07188 4.20133 4.37847 4.40837 4.45403 4.54057 4.59052 4.65185 4.72001 4.78650 4.86158 4.90307 5.01218 5.05300 5.07826 5.20703 5.21634 5.34374 5.36711 5.45125 5.55131 5.59769 5.85866 6.01851 6.39301 6.68180 6.76450 7.33202 8.89136 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027171 B = 0.004346 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.274816 B = 6441.663886 C = 6939.622706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.538 5.538 3 C 0.173 3.827 4 C -0.516 4.516 5 H 0.039 0.961 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.944 3.056 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.250 1.250 12 C 0.083 3.917 13 H 0.070 0.930 14 C -0.100 4.100 15 C -0.076 4.076 16 C -0.078 4.078 17 C -0.047 4.047 18 Cl -0.069 7.069 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.068 4.068 23 C -0.111 4.111 24 H 0.029 0.971 25 H 0.046 0.954 26 H 0.078 0.922 27 H -0.008 1.008 28 H 0.022 0.978 29 H 0.266 0.734 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -15.078 20.064 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.260 5.260 3 C 0.045 3.955 4 C -0.554 4.554 5 H 0.057 0.943 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.174 1.174 12 C -0.026 4.026 13 H 0.088 0.912 14 C -0.138 4.138 15 C -0.113 4.113 16 C -0.078 4.078 17 C -0.073 4.073 18 Cl -0.040 7.040 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.069 4.069 23 C -0.150 4.150 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.010 0.990 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.104 0.896 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.031 -15.295 19.489 24.795 hybrid contribution 0.125 1.170 0.526 1.289 sum 1.156 -14.125 20.015 24.525 Atomic orbital electron populations 1.22285 0.87691 1.01395 0.99953 1.62085 1.08329 1.14665 1.40927 1.19915 0.94780 0.86096 0.94672 1.21295 1.34756 0.97449 1.01892 0.94307 1.25815 0.96991 0.98440 0.97568 1.70047 1.48695 1.13910 1.26273 0.85767 0.79424 0.77737 0.80350 1.19222 1.20732 1.17362 1.21784 0.98866 0.94580 0.87393 0.91200 1.21512 1.00441 0.92578 0.99233 1.20510 1.01480 0.99581 0.89764 1.19604 0.99689 0.93273 0.95282 1.21083 1.04194 0.87123 0.94928 1.98350 1.87128 1.21084 1.97448 1.21258 1.00001 0.96797 0.95437 1.21322 0.98095 0.93093 0.99998 1.21524 0.99886 1.01074 0.91773 1.19576 0.98900 0.93321 0.95094 1.21166 1.02236 0.97919 0.93671 0.95309 0.93504 0.90390 0.99038 0.95976 0.92470 0.90538 0.91344 0.90022 0.89057 0.83034 0.82339 0.84664 0.89566 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.28 8.60 127.69 1.10 2.38 16 2 N -0.54 -21.69 4.71 -901.54 -4.25 -25.93 16 3 C 0.17 8.18 3.40 85.56 0.29 8.47 16 4 C -0.52 -29.78 9.01 25.60 0.23 -29.55 16 5 H 0.04 2.50 7.37 -2.91 -0.02 2.48 16 6 C 0.01 0.53 5.47 84.66 0.46 0.99 16 7 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 8 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 12 C 0.08 2.64 2.21 44.93 0.10 2.74 16 13 H 0.07 2.35 7.89 -2.39 -0.02 2.33 16 14 C -0.10 -2.62 4.92 30.62 0.15 -2.47 16 15 C -0.08 -1.73 5.00 29.74 0.15 -1.58 16 16 C -0.08 -1.84 5.74 -19.84 -0.11 -1.96 16 17 C -0.05 -0.98 6.31 22.41 0.14 -0.84 16 18 Cl -0.07 -1.33 27.26 -2.72 -0.07 -1.40 16 19 C -0.12 -2.05 9.82 22.23 0.22 -1.83 16 20 C -0.11 -1.80 10.05 22.20 0.22 -1.57 16 21 C -0.12 -2.59 9.61 22.36 0.21 -2.38 16 22 C -0.07 -1.69 5.74 -19.86 -0.11 -1.80 16 23 C -0.11 -3.19 4.35 29.73 0.13 -3.06 16 24 H 0.03 0.98 6.02 -2.38 -0.01 0.97 16 25 H 0.05 2.02 6.76 -2.39 -0.02 2.00 16 26 H 0.08 2.41 6.72 -2.39 -0.02 2.39 16 27 H -0.01 -0.37 6.37 -2.39 -0.02 -0.39 16 28 H 0.02 1.05 7.36 -2.39 -0.02 1.03 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 1.72 7.05 -2.39 -0.02 1.70 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.86 7.23 -2.39 -0.02 1.84 16 34 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.14 2.48 8.05 -2.91 -0.02 2.46 16 37 H 0.09 2.44 5.77 -2.39 -0.01 2.43 16 38 H 0.06 2.00 7.36 -2.38 -0.02 1.99 16 Total: -1.00 -65.24 309.03 2.04 -63.20 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.00 Total: 9.87 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 3.18 Total: -32.46 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -3.95 Total: -85.03 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.40 kcal Total: -65.24 2.04 -63.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171033187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.847 kcal (2) G-P(sol) polarization free energy of solvation -65.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds