Wall clock time and date at job start Tue Mar 31 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50704 * 109.46938 * 120.00103 * 2 1 3 5 5 H 1.08000 * 120.00338 * 120.00428 * 4 2 1 6 6 C 1.37881 * 119.99684 * 299.99887 * 4 2 1 7 7 N 1.31510 * 120.00265 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99544 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47450 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46977 * 120.00224 * 8 6 4 11 11 H 1.48499 * 109.47135 * 240.00079 * 8 6 4 12 12 N 1.46903 * 109.47383 * 239.99848 * 2 1 3 13 13 C 1.46895 * 110.99801 * 155.01657 * 12 2 1 14 14 H 1.08996 * 109.71085 * 34.60384 * 13 12 2 15 15 C 1.53330 * 109.68228 * 155.14296 * 13 12 2 16 16 C 1.52735 * 108.38000 * 189.61481 * 15 13 12 17 17 C 1.50634 * 110.58891 * 308.89814 * 16 15 13 18 18 C 1.38891 * 117.74275 * 197.53608 * 17 16 15 19 19 C 1.38047 * 120.53734 * 180.34202 * 18 17 16 20 20 Cl 1.73600 * 120.13004 * 180.24807 * 19 18 17 21 21 C 1.38382 * 119.74416 * 359.97366 * 19 18 17 22 22 C 1.37912 * 119.75545 * 359.90754 * 21 19 18 23 23 C 1.37671 * 122.56011 * 17.70729 * 17 16 15 24 24 C 1.50637 * 122.56497 * 359.39143 * 23 17 16 25 25 H 1.09000 * 109.47123 * 185.53717 * 1 2 3 26 26 H 1.08999 * 109.47531 * 305.53843 * 1 2 3 27 27 H 1.08998 * 109.46903 * 65.54435 * 1 2 3 28 28 H 0.96996 * 120.00008 * 179.97438 * 7 6 4 29 29 H 1.00898 * 110.99754 * 278.97124 * 12 2 1 30 30 H 1.09006 * 109.67749 * 309.33902 * 15 13 12 31 31 H 1.09000 * 109.68119 * 69.85120 * 15 13 12 32 32 H 1.08998 * 109.24959 * 69.18377 * 16 15 13 33 33 H 1.08999 * 109.25186 * 188.61398 * 16 15 13 34 34 H 1.08003 * 119.73134 * 0.36921 * 18 17 16 35 35 H 1.07998 * 120.12433 * 179.88143 * 21 19 18 36 36 H 1.08005 * 119.72041 * 180.08747 * 22 21 19 37 37 H 1.08998 * 109.25340 * 137.98283 * 24 23 17 38 38 H 1.09007 * 109.25229 * 257.41383 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1483 -2.2857 3.6038 10 1 3.1471 -0.1858 4.8161 11 1 1.1677 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 3.3672 -0.2318 -1.5599 14 1 3.9322 -0.0048 -0.6559 15 6 4.0891 -1.3227 -2.3598 16 6 5.5544 -0.9190 -2.5111 17 6 5.6645 0.4875 -3.0392 18 6 6.8808 0.8808 -3.5822 19 6 7.0478 2.1589 -4.0765 20 17 8.5707 2.6372 -4.7589 21 6 5.9947 3.0555 -4.0312 22 6 4.7859 2.6650 -3.4943 23 6 4.6162 1.3789 -2.9971 24 6 3.2674 1.0182 -2.4317 25 1 -0.3633 -1.0229 0.0992 26 1 -0.3634 0.5973 0.8362 27 1 -0.3633 0.4254 -0.9355 28 1 0.7081 1.1608 3.4844 29 1 2.0018 -1.6932 -1.0718 30 1 4.0228 -2.2722 -1.8285 31 1 3.6310 -1.4201 -3.3441 32 1 6.0454 -0.9777 -1.5398 33 1 6.0458 -1.6024 -3.2036 34 1 7.7026 0.1809 -3.6185 35 1 6.1192 4.0575 -4.4144 36 1 3.9640 3.3649 -3.4605 37 1 2.8966 1.8477 -1.8295 38 1 2.5728 0.8308 -3.2506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171112667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:17 Heat of formation + Delta-G solvation = -4.769946 kcal Electronic energy + Delta-G solvation = -19323.232026 eV Core-core repulsion = 16382.971436 eV Total energy + Delta-G solvation = -2940.260590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -40.02731 -37.24375 -36.28042 -34.40313 -32.59435 -31.74471 -29.87050 -28.72892 -26.64255 -25.05747 -23.44203 -22.24534 -21.82692 -19.93353 -19.02436 -16.82371 -16.45152 -15.68845 -15.50363 -14.79093 -14.52903 -14.13665 -13.67472 -13.53517 -13.23075 -13.09800 -12.76342 -12.32091 -12.15768 -12.01120 -11.78603 -11.40259 -11.18824 -11.01373 -10.90512 -10.88209 -10.81670 -10.57076 -10.23598 -10.20261 -9.91315 -9.65436 -9.09925 -8.80652 -8.43679 -8.35971 -7.32943 -6.02652 -4.14379 1.20132 1.28591 2.08770 3.24249 3.32984 3.35568 3.62284 4.37665 4.66347 4.77317 4.88972 5.13489 5.19477 5.22866 5.25405 5.29423 5.52852 5.72554 5.77218 5.85292 5.94501 6.00202 6.07799 6.16330 6.24289 6.28961 6.39233 6.53474 6.75235 6.78564 6.89152 6.92301 7.12528 7.29678 7.51049 7.73129 8.04634 8.14739 8.29668 8.62687 8.98204 9.53645 10.99090 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.003896 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.986282 B = 7184.654134 C = 7384.839928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.208 3.792 3 H 0.032 0.968 4 C -0.545 4.545 5 H 0.053 0.947 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.888 3.112 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.688 5.688 13 C 0.093 3.907 14 H 0.052 0.948 15 C -0.119 4.119 16 C -0.078 4.078 17 C -0.063 4.063 18 C -0.113 4.113 19 C -0.042 4.042 20 Cl -0.083 7.083 21 C -0.116 4.116 22 C -0.109 4.109 23 C -0.054 4.054 24 C -0.072 4.072 25 H 0.025 0.975 26 H 0.077 0.923 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.330 0.670 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.086 1.301 -13.101 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.100 3.900 3 H 0.050 0.950 4 C -0.584 4.584 5 H 0.072 0.928 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.318 5.318 13 C -0.017 4.017 14 H 0.070 0.930 15 C -0.157 4.157 16 C -0.116 4.116 17 C -0.063 4.063 18 C -0.131 4.131 19 C -0.069 4.069 20 Cl -0.055 7.055 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.055 4.055 24 C -0.110 4.110 25 H 0.044 0.956 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.807 1.896 -13.453 16.756 hybrid contribution 1.085 -0.701 1.640 2.088 sum 10.893 1.195 -11.813 16.113 Atomic orbital electron populations 1.21677 0.97833 0.99642 0.99048 1.19175 0.92297 0.94061 0.84488 0.95000 1.21875 1.31818 1.12759 0.91929 0.92835 1.24927 0.94809 0.94832 0.98935 1.69900 1.36390 1.22765 1.23351 0.86614 0.78706 0.79743 0.83373 1.19919 1.21042 1.20943 1.60916 1.20820 1.09925 1.40138 1.21270 0.91116 0.93146 0.96198 0.92953 1.21748 0.93930 0.98903 1.01115 1.20484 0.98228 0.91712 1.01149 1.19629 0.92190 0.96424 0.98070 1.21016 0.97901 0.94647 0.99574 1.20740 0.87517 0.95524 1.03105 1.98347 1.31158 1.92115 1.83843 1.20915 0.92192 0.99288 1.01039 1.21184 0.96968 0.96144 0.98404 1.19977 0.96119 0.92903 0.96504 1.20556 0.91748 0.99204 0.99460 0.95612 0.90405 0.96769 0.92962 0.85256 0.91404 0.91438 0.90291 0.90842 0.85386 0.85299 0.85117 0.90499 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 9.21 37.16 0.34 -2.63 16 2 C 0.21 5.03 2.41 -68.86 -0.17 4.86 16 3 H 0.03 0.85 7.27 -51.93 -0.38 0.47 16 4 C -0.54 -14.40 8.27 -34.44 -0.28 -14.69 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -24.84 11.38 55.43 0.63 -24.21 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.69 -13.80 6.06 -100.92 -0.61 -14.41 16 13 C 0.09 1.64 2.31 -67.68 -0.16 1.48 16 14 H 0.05 1.07 7.61 -51.93 -0.39 0.68 16 15 C -0.12 -1.69 5.36 -26.70 -0.14 -1.83 16 16 C -0.08 -0.98 5.67 -28.05 -0.16 -1.14 16 17 C -0.06 -0.85 5.74 -104.62 -0.60 -1.45 16 18 C -0.11 -1.40 9.39 -39.41 -0.37 -1.77 16 19 C -0.04 -0.52 6.31 -39.60 -0.25 -0.77 16 20 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 21 C -0.12 -1.39 9.84 -39.65 -0.39 -1.78 16 22 C -0.11 -1.39 9.61 -39.44 -0.38 -1.77 16 23 C -0.05 -0.78 5.74 -104.60 -0.60 -1.38 16 24 C -0.07 -1.15 5.14 -28.05 -0.14 -1.29 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 2.04 6.24 -51.93 -0.32 1.72 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.33 6.52 7.93 -39.29 -0.31 6.21 16 30 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 31 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.13 1.37 8.05 -52.48 -0.42 0.95 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.46 8.05 -52.48 -0.42 1.04 16 37 H 0.08 1.33 7.61 -51.93 -0.40 0.93 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -27.30 321.17 -10.62 -37.91 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.56 Total: 4.81 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -3.40 Total: -22.42 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.02 Total: -38.62 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.30 -10.62 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171112667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.143 kcal (2) G-P(sol) polarization free energy of solvation -27.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds