Wall clock time and date at job start Tue Mar 31 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50704 * 109.46938 * 120.00103 * 2 1 3 5 5 H 1.08000 * 120.00338 * 120.00428 * 4 2 1 6 6 C 1.37881 * 119.99684 * 299.99887 * 4 2 1 7 7 N 1.31510 * 120.00265 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99544 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47450 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46977 * 120.00224 * 8 6 4 11 11 H 1.48499 * 109.47135 * 240.00079 * 8 6 4 12 12 N 1.46903 * 109.47383 * 239.99848 * 2 1 3 13 13 C 1.46895 * 110.99801 * 155.01657 * 12 2 1 14 14 H 1.08996 * 109.71085 * 34.60384 * 13 12 2 15 15 C 1.53330 * 109.68228 * 155.14296 * 13 12 2 16 16 C 1.52735 * 108.38000 * 189.61481 * 15 13 12 17 17 C 1.50634 * 110.58891 * 308.89814 * 16 15 13 18 18 C 1.38891 * 117.74275 * 197.53608 * 17 16 15 19 19 C 1.38047 * 120.53734 * 180.34202 * 18 17 16 20 20 Cl 1.73600 * 120.13004 * 180.24807 * 19 18 17 21 21 C 1.38382 * 119.74416 * 359.97366 * 19 18 17 22 22 C 1.37912 * 119.75545 * 359.90754 * 21 19 18 23 23 C 1.37671 * 122.56011 * 17.70729 * 17 16 15 24 24 C 1.50637 * 122.56497 * 359.39143 * 23 17 16 25 25 H 1.09000 * 109.47123 * 185.53717 * 1 2 3 26 26 H 1.08999 * 109.47531 * 305.53843 * 1 2 3 27 27 H 1.08998 * 109.46903 * 65.54435 * 1 2 3 28 28 H 0.96996 * 120.00008 * 179.97438 * 7 6 4 29 29 H 1.00898 * 110.99754 * 278.97124 * 12 2 1 30 30 H 1.09006 * 109.67749 * 309.33902 * 15 13 12 31 31 H 1.09000 * 109.68119 * 69.85120 * 15 13 12 32 32 H 1.08998 * 109.24959 * 69.18377 * 16 15 13 33 33 H 1.08999 * 109.25186 * 188.61398 * 16 15 13 34 34 H 1.08003 * 119.73134 * 0.36921 * 18 17 16 35 35 H 1.07998 * 120.12433 * 179.88143 * 21 19 18 36 36 H 1.08005 * 119.72041 * 180.08747 * 22 21 19 37 37 H 1.08998 * 109.25340 * 137.98283 * 24 23 17 38 38 H 1.09007 * 109.25229 * 257.41383 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1483 -2.2857 3.6038 10 1 3.1471 -0.1858 4.8161 11 1 1.1677 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 3.3672 -0.2318 -1.5599 14 1 3.9322 -0.0048 -0.6559 15 6 4.0891 -1.3227 -2.3598 16 6 5.5544 -0.9190 -2.5111 17 6 5.6645 0.4875 -3.0392 18 6 6.8808 0.8808 -3.5822 19 6 7.0478 2.1589 -4.0765 20 17 8.5707 2.6372 -4.7589 21 6 5.9947 3.0555 -4.0312 22 6 4.7859 2.6650 -3.4943 23 6 4.6162 1.3789 -2.9971 24 6 3.2674 1.0182 -2.4317 25 1 -0.3633 -1.0229 0.0992 26 1 -0.3634 0.5973 0.8362 27 1 -0.3633 0.4254 -0.9355 28 1 0.7081 1.1608 3.4844 29 1 2.0018 -1.6932 -1.0718 30 1 4.0228 -2.2722 -1.8285 31 1 3.6310 -1.4201 -3.3441 32 1 6.0454 -0.9777 -1.5398 33 1 6.0458 -1.6024 -3.2036 34 1 7.7026 0.1809 -3.6185 35 1 6.1192 4.0575 -4.4144 36 1 3.9640 3.3649 -3.4605 37 1 2.8966 1.8477 -1.8295 38 1 2.5728 0.8308 -3.2506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171112667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:17 Heat of formation + Delta-G solvation = -18.258468 kcal Electronic energy + Delta-G solvation = -19323.816932 eV Core-core repulsion = 16382.971436 eV Total energy + Delta-G solvation = -2940.845497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09708 -38.52698 -37.40571 -35.93806 -34.04585 -33.17613 -31.24179 -29.98882 -28.11358 -27.13513 -24.58370 -23.27573 -23.05453 -21.81300 -20.23527 -18.62702 -17.64168 -16.93039 -16.69025 -16.64521 -15.68442 -15.41304 -15.15457 -14.73618 -14.49614 -14.40704 -14.06743 -13.79657 -13.47127 -13.32107 -13.13281 -12.94571 -12.81407 -12.72056 -12.39306 -12.20868 -12.08986 -11.90265 -11.85085 -11.84335 -11.33240 -11.17884 -11.07355 -10.51651 -9.77595 -9.39957 -9.08199 -8.07372 -6.27961 0.18727 0.31384 1.15031 1.37007 1.39872 1.49513 2.39835 2.62046 3.14768 3.48630 3.64959 3.89208 3.96440 4.14433 4.17323 4.25101 4.33821 4.61151 4.64197 4.69296 4.75785 4.89423 4.92319 5.00100 5.01410 5.08755 5.16817 5.22999 5.27324 5.30147 5.36454 5.45125 5.53535 5.68394 5.70572 5.88205 6.07038 6.18320 6.39144 6.83497 7.02996 7.43940 8.91404 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.003896 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.986282 B = 7184.654134 C = 7384.839928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.556 4.556 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.680 5.680 13 C 0.093 3.907 14 H 0.018 0.982 15 C -0.110 4.110 16 C -0.075 4.075 17 C -0.072 4.072 18 C -0.114 4.114 19 C -0.047 4.047 20 Cl -0.071 7.071 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.075 4.075 24 C -0.062 4.062 25 H 0.025 0.975 26 H 0.052 0.948 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.334 0.666 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.053 0.947 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.609 0.520 -14.101 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.595 4.595 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.776 3.224 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.310 5.310 13 C -0.018 4.018 14 H 0.036 0.964 15 C -0.148 4.148 16 C -0.112 4.112 17 C -0.072 4.072 18 C -0.132 4.132 19 C -0.074 4.074 20 Cl -0.042 7.042 21 C -0.134 4.134 22 C -0.132 4.132 23 C -0.076 4.076 24 C -0.100 4.100 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.339 1.108 -14.470 18.417 hybrid contribution 0.654 -0.403 1.897 2.046 sum 11.993 0.704 -12.573 17.390 Atomic orbital electron populations 1.21522 0.97704 0.99183 0.98792 1.18932 0.92370 0.92586 0.85551 0.98161 1.22170 1.31622 1.12728 0.92974 0.92974 1.25674 0.95091 0.95547 1.01794 1.70024 1.37366 1.23958 1.23951 0.85636 0.78198 0.78726 0.79851 1.19232 1.20957 1.20530 1.60847 1.22597 1.09791 1.37734 1.21305 0.89543 0.95287 0.95634 0.96432 1.21673 0.94777 0.97549 1.00813 1.20490 0.97018 0.91931 1.01756 1.19758 0.92414 0.96720 0.98300 1.21195 0.97908 0.95137 0.98966 1.20912 0.88097 0.95634 1.02721 1.98354 1.30277 1.92005 1.83580 1.21144 0.91634 1.00217 1.00410 1.21330 0.97864 0.95802 0.98234 1.19913 0.95545 0.94101 0.97997 1.20367 0.93272 0.97506 0.98831 0.95555 0.92877 0.95189 0.92941 0.84925 0.91007 0.90419 0.90635 0.87934 0.83483 0.83292 0.84140 0.92875 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.54 9.21 71.98 0.66 -4.88 16 2 C 0.21 10.65 2.41 44.17 0.11 10.76 16 3 H 0.00 0.02 7.27 -2.39 -0.02 0.01 16 4 C -0.56 -29.80 8.27 25.60 0.21 -29.59 16 5 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -52.26 11.38 21.45 0.24 -52.01 16 8 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 N -0.68 -27.54 6.06 -473.20 -2.87 -30.40 16 13 C 0.09 3.29 2.31 44.94 0.10 3.40 16 14 H 0.02 0.75 7.61 -2.39 -0.02 0.73 16 15 C -0.11 -2.98 5.36 30.62 0.16 -2.82 16 16 C -0.07 -1.74 5.67 29.74 0.17 -1.57 16 17 C -0.07 -1.83 5.74 -19.86 -0.11 -1.94 16 18 C -0.11 -2.57 9.39 22.38 0.21 -2.35 16 19 C -0.05 -1.06 6.31 22.26 0.14 -0.92 16 20 Cl -0.07 -1.41 28.96 -2.72 -0.08 -1.49 16 21 C -0.12 -2.56 9.84 22.23 0.22 -2.34 16 22 C -0.11 -2.83 9.61 22.36 0.21 -2.61 16 23 C -0.07 -2.11 5.74 -19.85 -0.11 -2.22 16 24 C -0.06 -2.02 5.14 29.74 0.15 -1.87 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 2.85 6.24 -2.39 -0.01 2.83 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.33 13.08 7.93 -89.70 -0.71 12.37 16 30 H 0.07 1.88 7.94 -2.38 -0.02 1.87 16 31 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 1.81 8.12 -2.39 -0.02 1.79 16 34 H 0.15 2.69 8.05 -2.91 -0.02 2.67 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.14 3.08 8.05 -2.91 -0.02 3.06 16 37 H 0.05 1.93 7.61 -2.39 -0.02 1.92 16 38 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -58.45 321.17 2.24 -56.20 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.34 Total: 20.07 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 2.58 Total: -37.49 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -2.62 Total: -82.42 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -58.45 2.24 -56.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171112667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.945 kcal (2) G-P(sol) polarization free energy of solvation -58.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds