Wall clock time and date at job start Tue Mar 31 2020 01:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47174 * 2 1 4 4 C 1.50702 * 109.46994 * 120.00463 * 2 1 3 5 5 H 1.08001 * 120.00117 * 120.00324 * 4 2 1 6 6 C 1.37873 * 119.99758 * 299.99583 * 4 2 1 7 7 N 1.31520 * 120.00334 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00032 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46985 * 60.00425 * 8 6 4 10 10 H 1.48506 * 109.47126 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47080 * 300.00287 * 8 6 4 12 12 N 1.46906 * 109.47146 * 239.99967 * 2 1 3 13 13 C 1.46908 * 110.99634 * 85.00317 * 12 2 1 14 14 H 1.09003 * 109.71190 * 324.45167 * 13 12 2 15 15 C 1.53327 * 109.68301 * 203.90698 * 13 12 2 16 16 C 1.52730 * 108.38639 * 170.36562 * 15 13 12 17 17 C 1.50636 * 110.59856 * 51.02343 * 16 15 13 18 18 C 1.38895 * 117.73944 * 162.71746 * 17 16 15 19 19 C 1.38045 * 120.53618 * 179.79822 * 18 17 16 20 20 Cl 1.73605 * 120.12803 * 179.89088 * 19 18 17 21 21 C 1.38379 * 119.74573 * 359.72848 * 19 18 17 22 22 C 1.37905 * 119.75492 * 0.25680 * 21 19 18 23 23 C 1.37675 * 122.56813 * 342.43893 * 17 16 15 24 24 C 1.50630 * 122.56327 * 0.49881 * 23 17 16 25 25 H 1.09001 * 109.47054 * 60.00207 * 1 2 3 26 26 H 1.09005 * 109.46942 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47531 * 299.99571 * 1 2 3 28 28 H 0.97000 * 120.00228 * 179.97438 * 7 6 4 29 29 H 1.00900 * 110.99535 * 208.95314 * 12 2 1 30 30 H 1.09005 * 109.67961 * 290.09957 * 15 13 12 31 31 H 1.09002 * 109.68050 * 50.64285 * 15 13 12 32 32 H 1.09000 * 109.25525 * 290.73442 * 16 15 13 33 33 H 1.09000 * 109.25284 * 171.30802 * 16 15 13 34 34 H 1.08005 * 119.73129 * 359.50165 * 18 17 16 35 35 H 1.08007 * 120.12358 * 180.23588 * 21 19 18 36 36 H 1.08003 * 119.71551 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.25969 * 102.58575 * 24 23 17 38 38 H 1.08999 * 109.25530 * 222.02472 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.8074 -1.1191 4.0077 10 1 1.8268 -0.4201 5.2205 11 1 1.8279 -2.5200 4.0081 12 7 2.0196 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.2535 0.9289 -2.2998 15 6 2.0046 -0.5788 -3.6517 16 6 1.8293 0.4015 -4.8096 17 6 2.8708 1.4879 -4.7465 18 6 3.0926 2.2383 -5.8941 19 6 4.0307 3.2510 -5.8995 20 17 4.3014 4.1804 -7.3406 21 6 4.7522 3.5248 -4.7508 22 6 4.5324 2.7804 -3.6109 23 6 3.5919 1.7580 -3.6052 24 6 3.4074 0.9824 -2.3271 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.7081 1.1608 3.4844 29 1 2.9173 -1.1205 -1.0287 30 1 2.9242 -1.1479 -3.7883 31 1 1.1537 -1.2590 -3.6145 32 1 0.8377 0.8506 -4.7533 33 1 1.9269 -0.1355 -5.7531 34 1 2.5300 2.0246 -6.7909 35 1 5.4849 4.3182 -4.7471 36 1 5.0961 2.9943 -2.7148 37 1 4.2271 0.2727 -2.2157 38 1 3.4132 1.6728 -1.4837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171112669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:25 Heat of formation + Delta-G solvation = -3.493088 kcal Electronic energy + Delta-G solvation = -19240.189254 eV Core-core repulsion = 16299.984032 eV Total energy + Delta-G solvation = -2940.205222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.10656 -37.32808 -36.33077 -34.41161 -32.70757 -31.73586 -29.80767 -28.79574 -26.58939 -25.16913 -23.51053 -22.31979 -21.94917 -19.77849 -19.31148 -16.78181 -16.43938 -15.70890 -15.52145 -14.79489 -14.42510 -14.07711 -13.86462 -13.62733 -13.33231 -13.23541 -12.80253 -12.54626 -12.11966 -11.94595 -11.79306 -11.44707 -11.23283 -11.03298 -10.94554 -10.89882 -10.67831 -10.51270 -10.38044 -10.19228 -10.12509 -9.76613 -8.86171 -8.85981 -8.50572 -8.43092 -7.29560 -6.04638 -4.11389 1.13772 1.23154 2.04069 3.29236 3.34144 3.36646 3.56087 4.37766 4.62755 4.75088 4.85379 5.09592 5.14502 5.16946 5.26134 5.28122 5.40671 5.65118 5.68893 5.76904 5.84144 5.94820 6.02452 6.11488 6.16204 6.23622 6.28528 6.56039 6.61162 6.66884 6.81786 6.89379 7.13279 7.22463 7.50399 7.75882 7.87751 8.25493 8.36998 8.64825 8.99384 9.54815 11.01465 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032597 B = 0.003553 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.761275 B = 7878.721237 C = 8294.428877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.682 5.682 13 C 0.090 3.910 14 H 0.075 0.925 15 C -0.108 4.108 16 C -0.080 4.080 17 C -0.062 4.062 18 C -0.113 4.113 19 C -0.041 4.041 20 Cl -0.082 7.082 21 C -0.116 4.116 22 C -0.109 4.109 23 C -0.055 4.055 24 C -0.113 4.113 25 H 0.003 0.997 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 3.797 -16.293 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.021 4.021 14 H 0.093 0.907 15 C -0.146 4.146 16 C -0.117 4.117 17 C -0.062 4.062 18 C -0.132 4.132 19 C -0.068 4.068 20 Cl -0.053 7.053 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.056 4.056 24 C -0.151 4.151 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.096 0.904 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.692 3.741 -16.413 17.476 hybrid contribution 1.194 0.393 0.961 1.582 sum 5.886 4.134 -15.452 17.044 Atomic orbital electron populations 1.21733 0.97983 0.99328 0.99308 1.19100 0.92509 0.92389 0.85545 0.98036 1.21232 1.31572 1.12546 0.90520 0.92304 1.24913 0.95027 0.94973 0.99020 1.69887 1.36504 1.22859 1.23576 0.86601 0.79063 0.79818 0.82145 1.20342 1.21319 1.20200 1.60848 1.32000 1.32225 1.06033 1.21522 0.94995 0.93510 0.92050 0.90703 1.21575 1.02504 0.97347 0.93159 1.20523 0.96907 0.94543 0.99775 1.19666 0.97458 0.97074 0.92036 1.21030 0.97961 0.95231 0.98949 1.20759 1.00733 0.96885 0.88396 1.98351 1.95918 1.72941 1.38130 1.20922 1.00155 1.00730 0.91650 1.21218 0.98221 0.95373 0.97910 1.19887 0.94753 0.95648 0.95301 1.21387 1.00423 0.99444 0.93889 0.97750 0.94988 0.90149 0.92866 0.85140 0.92172 0.90491 0.90333 0.90779 0.85295 0.85275 0.85186 0.90400 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.18 37.16 0.34 -2.72 16 2 C 0.21 5.17 2.42 -68.86 -0.17 5.01 16 3 H 0.00 0.05 7.21 -51.93 -0.37 -0.32 16 4 C -0.52 -13.90 8.59 -34.44 -0.30 -14.20 16 5 H 0.06 1.55 7.62 -52.49 -0.40 1.15 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.42 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.68 -13.73 6.07 -100.91 -0.61 -14.34 16 13 C 0.09 1.51 2.29 -67.67 -0.16 1.36 16 14 H 0.07 1.38 7.09 -51.93 -0.37 1.01 16 15 C -0.11 -1.48 5.60 -26.70 -0.15 -1.63 16 16 C -0.08 -0.95 5.67 -28.05 -0.16 -1.11 16 17 C -0.06 -0.80 5.74 -104.62 -0.60 -1.40 16 18 C -0.11 -1.34 9.40 -39.41 -0.37 -1.71 16 19 C -0.04 -0.49 6.31 -39.60 -0.25 -0.74 16 20 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.39 16 21 C -0.12 -1.36 9.84 -39.65 -0.39 -1.75 16 22 C -0.11 -1.37 9.60 -39.45 -0.38 -1.75 16 23 C -0.06 -0.76 5.74 -104.61 -0.60 -1.36 16 24 C -0.11 -1.73 4.97 -28.05 -0.14 -1.87 16 25 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.33 6.51 7.85 -39.29 -0.31 6.20 16 30 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 34 H 0.13 1.30 8.05 -52.48 -0.42 0.88 16 35 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.13 1.47 8.05 -52.48 -0.42 1.04 16 37 H 0.08 1.15 7.94 -51.93 -0.41 0.74 16 38 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -27.50 319.73 -10.57 -38.06 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.47 Total: 4.62 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.41 Total: -22.28 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.02 Total: -38.76 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.50 -10.57 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171112669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.571 kcal (2) G-P(sol) polarization free energy of solvation -27.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds