Wall clock time and date at job start Tue Mar 31 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47174 * 2 1 4 4 C 1.50702 * 109.46994 * 120.00463 * 2 1 3 5 5 H 1.08001 * 120.00117 * 120.00324 * 4 2 1 6 6 C 1.37873 * 119.99758 * 299.99583 * 4 2 1 7 7 N 1.31520 * 120.00334 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00032 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46985 * 60.00425 * 8 6 4 10 10 H 1.48506 * 109.47126 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47080 * 300.00287 * 8 6 4 12 12 N 1.46906 * 109.47146 * 239.99967 * 2 1 3 13 13 C 1.46908 * 110.99634 * 85.00317 * 12 2 1 14 14 H 1.09003 * 109.71190 * 324.45167 * 13 12 2 15 15 C 1.53327 * 109.68301 * 203.90698 * 13 12 2 16 16 C 1.52730 * 108.38639 * 170.36562 * 15 13 12 17 17 C 1.50636 * 110.59856 * 51.02343 * 16 15 13 18 18 C 1.38895 * 117.73944 * 162.71746 * 17 16 15 19 19 C 1.38045 * 120.53618 * 179.79822 * 18 17 16 20 20 Cl 1.73605 * 120.12803 * 179.89088 * 19 18 17 21 21 C 1.38379 * 119.74573 * 359.72848 * 19 18 17 22 22 C 1.37905 * 119.75492 * 0.25680 * 21 19 18 23 23 C 1.37675 * 122.56813 * 342.43893 * 17 16 15 24 24 C 1.50630 * 122.56327 * 0.49881 * 23 17 16 25 25 H 1.09001 * 109.47054 * 60.00207 * 1 2 3 26 26 H 1.09005 * 109.46942 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47531 * 299.99571 * 1 2 3 28 28 H 0.97000 * 120.00228 * 179.97438 * 7 6 4 29 29 H 1.00900 * 110.99535 * 208.95314 * 12 2 1 30 30 H 1.09005 * 109.67961 * 290.09957 * 15 13 12 31 31 H 1.09002 * 109.68050 * 50.64285 * 15 13 12 32 32 H 1.09000 * 109.25525 * 290.73442 * 16 15 13 33 33 H 1.09000 * 109.25284 * 171.30802 * 16 15 13 34 34 H 1.08005 * 119.73129 * 359.50165 * 18 17 16 35 35 H 1.08007 * 120.12358 * 180.23588 * 21 19 18 36 36 H 1.08003 * 119.71551 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.25969 * 102.58575 * 24 23 17 38 38 H 1.08999 * 109.25530 * 222.02472 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.8074 -1.1191 4.0077 10 1 1.8268 -0.4201 5.2205 11 1 1.8279 -2.5200 4.0081 12 7 2.0196 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.2535 0.9289 -2.2998 15 6 2.0046 -0.5788 -3.6517 16 6 1.8293 0.4015 -4.8096 17 6 2.8708 1.4879 -4.7465 18 6 3.0926 2.2383 -5.8941 19 6 4.0307 3.2510 -5.8995 20 17 4.3014 4.1804 -7.3406 21 6 4.7522 3.5248 -4.7508 22 6 4.5324 2.7804 -3.6109 23 6 3.5919 1.7580 -3.6052 24 6 3.4074 0.9824 -2.3271 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.7081 1.1608 3.4844 29 1 2.9173 -1.1205 -1.0287 30 1 2.9242 -1.1479 -3.7883 31 1 1.1537 -1.2590 -3.6145 32 1 0.8377 0.8506 -4.7533 33 1 1.9269 -0.1355 -5.7531 34 1 2.5300 2.0246 -6.7909 35 1 5.4849 4.3182 -4.7471 36 1 5.0961 2.9943 -2.7148 37 1 4.2271 0.2727 -2.2157 38 1 3.4132 1.6728 -1.4837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171112669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:23 Heat of formation + Delta-G solvation = -17.205816 kcal Electronic energy + Delta-G solvation = -19240.783883 eV Core-core repulsion = 16299.984032 eV Total energy + Delta-G solvation = -2940.799850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -41.14775 -38.58490 -37.41456 -35.93370 -34.14464 -33.13260 -31.11325 -30.08730 -28.08908 -27.20256 -24.62762 -23.35803 -23.13950 -21.60803 -20.53014 -18.43931 -17.64254 -16.99178 -16.80811 -16.37295 -15.55298 -15.48089 -15.28365 -14.86185 -14.50046 -14.42925 -14.27060 -13.87572 -13.47154 -13.13241 -13.06747 -12.89245 -12.76989 -12.75304 -12.40549 -12.25802 -12.14924 -11.97851 -11.87614 -11.79734 -11.40959 -11.32148 -10.86218 -10.55436 -9.79537 -9.43639 -8.98712 -8.11806 -6.25827 0.15673 0.29218 1.13547 1.43220 1.44927 1.52314 2.42350 2.59134 3.16749 3.51528 3.67072 3.87165 3.93082 4.00982 4.18430 4.19410 4.27101 4.52207 4.62693 4.67287 4.75377 4.84426 4.86332 4.95211 4.99353 5.09093 5.11110 5.20767 5.23561 5.28794 5.36676 5.44388 5.54524 5.64154 5.70803 5.86171 5.89739 6.24436 6.51472 6.81430 7.04620 7.44843 8.93454 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032597 B = 0.003553 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.761275 B = 7878.721237 C = 8294.428877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.219 3.781 3 H -0.029 1.029 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.679 5.679 13 C 0.090 3.910 14 H 0.054 0.946 15 C -0.098 4.098 16 C -0.075 4.075 17 C -0.068 4.068 18 C -0.112 4.112 19 C -0.046 4.046 20 Cl -0.070 7.070 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.075 4.075 24 C -0.102 4.102 25 H 0.019 0.981 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.262 0.738 29 H 0.333 0.667 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.093 3.386 -17.823 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 H -0.011 1.011 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.309 5.309 13 C -0.021 4.021 14 H 0.072 0.928 15 C -0.137 4.137 16 C -0.112 4.112 17 C -0.069 4.069 18 C -0.131 4.131 19 C -0.072 4.072 20 Cl -0.041 7.041 21 C -0.135 4.135 22 C -0.135 4.135 23 C -0.075 4.075 24 C -0.141 4.141 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.399 3.326 -17.968 19.054 hybrid contribution 0.989 0.582 1.359 1.778 sum 6.388 3.908 -16.609 18.219 Atomic orbital electron populations 1.21566 0.98117 0.98780 0.98828 1.18855 0.92364 0.90889 0.86870 1.01103 1.21592 1.31646 1.12697 0.91674 0.92196 1.25715 0.95197 0.95647 1.02000 1.70022 1.37472 1.24110 1.24140 0.85584 0.78766 0.78669 0.78428 1.19525 1.21124 1.19694 1.60781 1.32202 1.32598 1.05292 1.21564 0.95011 0.93298 0.92209 0.92761 1.21479 1.02802 0.97403 0.91968 1.20526 0.96766 0.93982 0.99965 1.19794 0.97472 0.97589 0.92000 1.21223 0.97884 0.94769 0.99219 1.20925 1.00541 0.96916 0.88868 1.98357 1.95841 1.72599 1.37337 1.21127 1.00346 1.00830 0.91213 1.21332 0.98162 0.95273 0.98697 1.19813 0.96303 0.96529 0.94896 1.21157 0.99654 0.99016 0.94226 0.96176 0.95343 0.92640 0.92921 0.84882 0.91438 0.90659 0.89982 0.87999 0.83237 0.83466 0.84606 0.90069 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.73 9.18 71.98 0.66 -5.06 16 2 C 0.22 10.96 2.42 44.17 0.11 11.07 16 3 H -0.03 -1.58 7.21 -2.39 -0.02 -1.60 16 4 C -0.54 -29.14 8.59 25.60 0.22 -28.92 16 5 H 0.06 3.16 7.62 -2.91 -0.02 3.14 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -52.75 11.32 21.45 0.24 -52.51 16 8 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.68 -27.68 6.07 -473.17 -2.87 -30.55 16 13 C 0.09 3.02 2.29 44.94 0.10 3.13 16 14 H 0.05 2.05 7.09 -2.39 -0.02 2.03 16 15 C -0.10 -2.58 5.60 30.61 0.17 -2.40 16 16 C -0.08 -1.61 5.67 29.74 0.17 -1.44 16 17 C -0.07 -1.64 5.74 -19.86 -0.11 -1.75 16 18 C -0.11 -2.39 9.40 22.38 0.21 -2.18 16 19 C -0.05 -1.00 6.31 22.26 0.14 -0.85 16 20 Cl -0.07 -1.35 28.96 -2.72 -0.08 -1.42 16 21 C -0.12 -2.54 9.84 22.22 0.22 -2.32 16 22 C -0.12 -2.85 9.60 22.35 0.21 -2.64 16 23 C -0.07 -2.02 5.74 -19.86 -0.11 -2.13 16 24 C -0.10 -3.18 4.97 29.74 0.15 -3.03 16 25 H 0.02 0.89 7.43 -2.39 -0.02 0.87 16 26 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.05 3.05 6.07 -2.39 -0.01 3.03 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.33 13.21 7.85 -89.69 -0.70 12.51 16 30 H 0.07 1.68 8.10 -2.38 -0.02 1.66 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 1.65 8.13 -2.39 -0.02 1.64 16 34 H 0.15 2.51 8.05 -2.91 -0.02 2.49 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.14 3.05 8.05 -2.91 -0.02 3.02 16 37 H 0.08 2.42 7.94 -2.39 -0.02 2.40 16 38 H 0.05 1.93 7.54 -2.39 -0.02 1.91 16 Total: -1.00 -58.84 319.73 2.26 -56.59 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.35 Total: 20.13 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 2.58 Total: -37.35 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -2.63 Total: -83.06 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.08 Total: -1.42 kcal Total: -58.84 2.26 -56.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171112669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.380 kcal (2) G-P(sol) polarization free energy of solvation -58.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.52 seconds