Wall clock time and date at job start Tue Mar 31 2020 01:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99662 * 2 1 4 4 C 1.50697 * 109.47282 * 293.95188 * 3 2 1 5 5 H 1.08002 * 120.00112 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99965 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00108 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 120.00090 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.46939 * 89.99871 * 8 6 4 10 10 H 1.48499 * 109.46880 * 209.99779 * 8 6 4 11 11 H 1.48501 * 109.46871 * 329.99621 * 8 6 4 12 12 C 1.46896 * 111.00213 * 123.95626 * 2 1 3 13 13 H 1.08998 * 109.68210 * 186.56555 * 12 2 1 14 14 C 1.53328 * 109.68250 * 66.04170 * 12 2 1 15 15 C 1.52727 * 108.38164 * 170.38886 * 14 12 2 16 16 C 1.50638 * 110.58984 * 51.09479 * 15 14 12 17 17 C 1.38896 * 117.73706 * 162.52031 * 16 15 14 18 18 C 1.38048 * 120.53418 * 179.97438 * 17 16 15 19 19 Cl 1.73594 * 120.12836 * 179.62726 * 18 17 16 20 20 C 1.38381 * 119.73939 * 359.36889 * 18 17 16 21 21 C 1.37902 * 119.75960 * 0.61008 * 20 18 17 22 22 C 1.37675 * 122.56417 * 342.29428 * 16 15 14 23 23 C 1.50629 * 122.55834 * 0.61760 * 22 16 15 24 24 H 1.09002 * 109.46854 * 296.04780 * 1 2 3 25 25 H 1.08998 * 109.47052 * 56.04019 * 1 2 3 26 26 H 1.08995 * 109.47405 * 176.04742 * 1 2 3 27 27 H 1.08993 * 109.47449 * 53.96279 * 3 2 1 28 28 H 1.09007 * 109.46395 * 173.95897 * 3 2 1 29 29 H 0.97000 * 119.99754 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.68192 * 50.66663 * 14 12 2 31 31 H 1.08997 * 109.71462 * 290.13208 * 14 12 2 32 32 H 1.09000 * 109.25728 * 290.80482 * 15 14 12 33 33 H 1.09002 * 109.22273 * 171.35649 * 15 14 12 34 34 H 1.08002 * 119.72947 * 359.70616 * 17 16 15 35 35 H 1.08001 * 120.11713 * 180.34123 * 20 18 17 36 36 H 1.08004 * 119.72196 * 179.78997 * 21 20 18 37 37 H 1.09000 * 109.25635 * 221.99491 * 23 22 16 38 38 H 1.09006 * 109.22142 * 102.55604 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0276 3.3491 -1.5288 7 7 1.7152 3.9387 -2.6622 8 14 3.0020 4.2754 -0.2318 9 1 4.4541 4.0618 -0.4573 10 1 2.6948 5.7254 -0.3237 11 1 2.6315 3.7754 1.1165 12 6 1.9956 -0.7660 1.1375 13 1 3.0790 -0.6560 1.1842 14 6 1.6333 -2.2470 0.9748 15 6 2.3907 -3.0471 2.0325 16 6 2.1820 -2.4490 3.3992 17 6 2.4787 -3.2388 4.5026 18 6 2.3093 -2.7486 5.7820 19 17 2.6742 -3.7481 7.1535 20 6 1.8526 -1.4554 5.9667 21 6 1.5581 -0.6705 4.8717 22 6 1.7190 -1.1656 3.5837 23 6 1.3697 -0.2568 2.4344 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5741 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 1.9904 4.8546 -2.8244 30 1 1.9213 -2.5882 -0.0196 31 1 0.5603 -2.3803 1.1121 32 1 3.4546 -3.0395 1.7955 33 1 2.0296 -4.0755 2.0313 34 1 2.8407 -4.2461 4.3585 35 1 1.7231 -1.0638 6.9648 36 1 1.1984 0.3375 5.0166 37 1 1.7415 0.7462 2.6434 38 1 0.2861 -0.2219 2.3210 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171115156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:23 Heat of formation + Delta-G solvation = 12.713659 kcal Electronic energy + Delta-G solvation = -19407.039721 eV Core-core repulsion = 16467.537277 eV Total energy + Delta-G solvation = -2939.502444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31528 -37.85271 -36.56538 -34.35777 -32.63805 -32.03868 -29.89152 -28.54676 -27.52068 -25.23750 -23.70811 -22.45164 -22.06798 -20.38830 -18.74683 -17.06863 -16.70651 -15.87977 -15.68717 -14.75274 -14.59497 -14.24170 -13.94236 -13.84417 -13.69757 -13.33516 -13.13011 -12.64895 -12.45751 -12.19302 -12.02356 -11.88052 -11.39702 -11.17395 -11.12145 -11.02428 -10.97654 -10.62266 -10.48121 -10.38847 -10.12521 -9.80922 -9.30860 -8.94871 -8.59859 -8.52178 -7.37482 -6.07205 -4.04536 1.04553 1.14079 1.96788 3.26363 3.34044 3.34862 3.46707 4.39631 4.50790 4.57462 4.72849 4.91018 5.00689 5.05755 5.14578 5.16792 5.25433 5.51790 5.52824 5.61307 5.71110 5.79706 5.84586 5.94573 5.98208 6.04785 6.10361 6.19781 6.23873 6.39964 6.50919 6.54842 6.67056 6.73527 6.86400 6.98050 7.57069 7.87648 8.02583 8.63631 9.01518 9.54547 11.05934 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.003940 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.735615 B = 7105.020458 C = 7692.988200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.522 5.522 3 C 0.160 3.840 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.083 3.917 13 H 0.079 0.921 14 C -0.109 4.109 15 C -0.079 4.079 16 C -0.063 4.063 17 C -0.112 4.112 18 C -0.041 4.041 19 Cl -0.081 7.081 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.055 4.055 23 C -0.123 4.123 24 H 0.017 0.983 25 H 0.079 0.921 26 H 0.050 0.950 27 H -0.010 1.010 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -14.153 16.614 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.244 5.244 3 C 0.034 3.966 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.026 4.026 13 H 0.097 0.903 14 C -0.147 4.147 15 C -0.117 4.117 16 C -0.063 4.063 17 C -0.130 4.130 18 C -0.067 4.067 19 Cl -0.052 7.052 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.056 4.056 23 C -0.161 4.161 24 H 0.035 0.965 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.007 0.993 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.096 0.904 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.423 -14.281 16.173 21.579 hybrid contribution 0.332 1.035 1.684 2.005 sum 0.755 -13.245 17.857 22.246 Atomic orbital electron populations 1.22354 0.88524 1.00137 1.00914 1.62203 1.07418 1.16508 1.38227 1.20196 0.94864 0.84266 0.97257 1.21041 1.35599 0.97193 1.00915 0.90106 1.24899 0.95793 0.97377 0.95246 1.69894 1.46905 1.13317 1.23831 0.86887 0.80975 0.79330 0.82715 1.20131 1.21210 1.19322 1.21742 0.99448 0.93541 0.87891 0.90291 1.21592 0.99952 0.94426 0.98755 1.20516 1.01564 0.99103 0.90503 1.19663 0.98219 0.93194 0.95224 1.21037 1.01255 1.00549 0.90201 1.20767 1.04934 0.92828 0.88212 1.98354 1.93439 1.69522 1.43860 1.20923 1.00344 0.92357 0.99740 1.21195 1.00042 1.00061 0.91498 1.19836 0.97051 0.93902 0.94830 1.21371 1.02601 0.98319 0.93854 0.96463 0.90186 0.93132 0.99256 0.95930 0.92660 0.90134 0.91840 0.90164 0.90565 0.85205 0.85236 0.85270 0.90438 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 8.60 60.07 0.52 1.04 16 2 N -0.52 -10.33 4.71 -236.29 -1.11 -11.44 16 3 C 0.16 3.76 3.40 -4.98 -0.02 3.74 16 4 C -0.51 -14.18 9.01 -34.44 -0.31 -14.49 16 5 H 0.08 2.45 7.37 -52.49 -0.39 2.06 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 8 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 12 C 0.08 1.33 2.21 -67.68 -0.15 1.18 16 13 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 14 C -0.11 -1.42 4.92 -26.70 -0.13 -1.55 16 15 C -0.08 -0.86 5.67 -28.05 -0.16 -1.02 16 16 C -0.06 -0.75 5.74 -104.61 -0.60 -1.35 16 17 C -0.11 -1.24 9.39 -39.41 -0.37 -1.61 16 18 C -0.04 -0.46 6.31 -39.60 -0.25 -0.71 16 19 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 20 C -0.11 -1.27 9.84 -39.65 -0.39 -1.66 16 21 C -0.11 -1.30 9.61 -39.45 -0.38 -1.68 16 22 C -0.06 -0.72 5.74 -104.61 -0.60 -1.32 16 23 C -0.12 -1.80 4.35 -28.05 -0.12 -1.92 16 24 H 0.02 0.29 6.02 -51.93 -0.31 -0.02 16 25 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 26 H 0.05 0.78 6.72 -51.93 -0.35 0.43 16 27 H -0.01 -0.24 6.38 -51.93 -0.33 -0.57 16 28 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.81 7.05 -51.93 -0.37 0.44 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.13 1.21 8.05 -52.49 -0.42 0.79 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.13 1.36 8.05 -52.48 -0.42 0.94 16 37 H 0.08 1.22 7.35 -51.93 -0.38 0.84 16 38 H 0.09 1.27 5.78 -51.93 -0.30 0.97 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -29.52 311.65 -10.15 -39.67 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.27 Total: -1.12 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.06 Total: -19.49 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.34 Total: -37.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.52 -10.15 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171115156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.383 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds