Wall clock time and date at job start Tue Mar 31 2020 01:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 110.99662 * 2 1 4 4 C 1.50697 * 109.47282 * 293.95188 * 3 2 1 5 5 H 1.08002 * 120.00112 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99965 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00108 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 120.00090 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.46939 * 89.99871 * 8 6 4 10 10 H 1.48499 * 109.46880 * 209.99779 * 8 6 4 11 11 H 1.48501 * 109.46871 * 329.99621 * 8 6 4 12 12 C 1.46896 * 111.00213 * 123.95626 * 2 1 3 13 13 H 1.08998 * 109.68210 * 186.56555 * 12 2 1 14 14 C 1.53328 * 109.68250 * 66.04170 * 12 2 1 15 15 C 1.52727 * 108.38164 * 170.38886 * 14 12 2 16 16 C 1.50638 * 110.58984 * 51.09479 * 15 14 12 17 17 C 1.38896 * 117.73706 * 162.52031 * 16 15 14 18 18 C 1.38048 * 120.53418 * 179.97438 * 17 16 15 19 19 Cl 1.73594 * 120.12836 * 179.62726 * 18 17 16 20 20 C 1.38381 * 119.73939 * 359.36889 * 18 17 16 21 21 C 1.37902 * 119.75960 * 0.61008 * 20 18 17 22 22 C 1.37675 * 122.56417 * 342.29428 * 16 15 14 23 23 C 1.50629 * 122.55834 * 0.61760 * 22 16 15 24 24 H 1.09002 * 109.46854 * 296.04780 * 1 2 3 25 25 H 1.08998 * 109.47052 * 56.04019 * 1 2 3 26 26 H 1.08995 * 109.47405 * 176.04742 * 1 2 3 27 27 H 1.08993 * 109.47449 * 53.96279 * 3 2 1 28 28 H 1.09007 * 109.46395 * 173.95897 * 3 2 1 29 29 H 0.97000 * 119.99754 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.68192 * 50.66663 * 14 12 2 31 31 H 1.08997 * 109.71462 * 290.13208 * 14 12 2 32 32 H 1.09000 * 109.25728 * 290.80482 * 15 14 12 33 33 H 1.09002 * 109.22273 * 171.35649 * 15 14 12 34 34 H 1.08002 * 119.72947 * 359.70616 * 17 16 15 35 35 H 1.08001 * 120.11713 * 180.34123 * 20 18 17 36 36 H 1.08004 * 119.72196 * 179.78997 * 21 20 18 37 37 H 1.09000 * 109.25635 * 221.99491 * 23 22 16 38 38 H 1.09006 * 109.22142 * 102.55604 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0276 3.3491 -1.5288 7 7 1.7152 3.9387 -2.6622 8 14 3.0020 4.2754 -0.2318 9 1 4.4541 4.0618 -0.4573 10 1 2.6948 5.7254 -0.3237 11 1 2.6315 3.7754 1.1165 12 6 1.9956 -0.7660 1.1375 13 1 3.0790 -0.6560 1.1842 14 6 1.6333 -2.2470 0.9748 15 6 2.3907 -3.0471 2.0325 16 6 2.1820 -2.4490 3.3992 17 6 2.4787 -3.2388 4.5026 18 6 2.3093 -2.7486 5.7820 19 17 2.6742 -3.7481 7.1535 20 6 1.8526 -1.4554 5.9667 21 6 1.5581 -0.6705 4.8717 22 6 1.7190 -1.1656 3.5837 23 6 1.3697 -0.2568 2.4344 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5741 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 1.9904 4.8546 -2.8244 30 1 1.9213 -2.5882 -0.0196 31 1 0.5603 -2.3803 1.1121 32 1 3.4546 -3.0395 1.7955 33 1 2.0296 -4.0755 2.0313 34 1 2.8407 -4.2461 4.3585 35 1 1.7231 -1.0638 6.9648 36 1 1.1984 0.3375 5.0166 37 1 1.7415 0.7462 2.6434 38 1 0.2861 -0.2219 2.3210 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171115156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:22 Heat of formation + Delta-G solvation = -3.927011 kcal Electronic energy + Delta-G solvation = -19407.761315 eV Core-core repulsion = 16467.537277 eV Total energy + Delta-G solvation = -2940.224038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30677 -39.07058 -37.47121 -35.63429 -34.42904 -33.21964 -31.00950 -29.92548 -28.98138 -26.78688 -24.84302 -23.53423 -23.22023 -21.85418 -19.92442 -19.02600 -17.68039 -16.98069 -16.83007 -16.49189 -15.79836 -15.42573 -15.26081 -15.13416 -14.80927 -14.53503 -14.33558 -14.14738 -13.81598 -13.37396 -13.21618 -12.93838 -12.78380 -12.71193 -12.51461 -12.29553 -12.04557 -11.98533 -11.82803 -11.73088 -11.51671 -11.38853 -11.25364 -10.77479 -9.79291 -9.45754 -8.92532 -8.27727 -6.30548 0.15360 0.29221 1.14148 1.34637 1.35137 1.45590 2.34109 2.58859 3.05506 3.22279 3.64188 3.80675 3.89032 3.94009 4.11731 4.16438 4.24235 4.45708 4.48329 4.59814 4.63405 4.66313 4.73123 4.78903 4.87316 4.93566 5.04048 5.07684 5.10196 5.21439 5.22273 5.26503 5.39980 5.41299 5.55474 5.63095 5.84874 6.02334 6.39869 6.68904 6.76576 7.33139 8.88913 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.003940 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.735615 B = 7105.020458 C = 7692.988200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.538 5.538 3 C 0.172 3.828 4 C -0.515 4.515 5 H 0.039 0.961 6 C 0.008 3.992 7 N -0.949 5.949 8 Si 0.944 3.056 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.251 1.251 12 C 0.082 3.918 13 H 0.071 0.929 14 C -0.102 4.102 15 C -0.074 4.074 16 C -0.068 4.068 17 C -0.112 4.112 18 C -0.046 4.046 19 Cl -0.072 7.072 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.073 4.073 23 C -0.113 4.113 24 H 0.027 0.973 25 H 0.045 0.955 26 H 0.079 0.921 27 H -0.009 1.009 28 H 0.023 0.977 29 H 0.266 0.734 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.061 0.939 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -15.559 19.244 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.260 5.260 3 C 0.045 3.955 4 C -0.553 4.553 5 H 0.057 0.943 6 C -0.189 4.189 7 N -0.590 5.590 8 Si 0.767 3.233 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.174 1.174 12 C -0.027 4.027 13 H 0.089 0.911 14 C -0.140 4.140 15 C -0.111 4.111 16 C -0.068 4.068 17 C -0.131 4.131 18 C -0.073 4.073 19 Cl -0.043 7.043 20 C -0.135 4.135 21 C -0.134 4.134 22 C -0.074 4.074 23 C -0.152 4.152 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.008 0.992 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.080 0.920 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.177 -15.718 18.819 24.548 hybrid contribution 0.052 1.376 0.850 1.618 sum 1.229 -14.342 19.669 24.373 Atomic orbital electron populations 1.22284 0.87735 1.01443 0.99860 1.62101 1.08295 1.14612 1.41019 1.19914 0.94800 0.86181 0.94599 1.21300 1.34669 0.97440 1.01895 0.94263 1.25823 0.97042 0.98479 0.97564 1.70051 1.48722 1.13928 1.26268 0.85766 0.79467 0.77726 0.80315 1.19146 1.20787 1.17440 1.21816 0.98900 0.94853 0.87154 0.91071 1.21528 1.00573 0.92382 0.99529 1.20512 1.01724 0.99808 0.89052 1.19783 0.98071 0.92910 0.96029 1.21220 1.00773 1.01260 0.89805 1.20937 1.04564 0.93077 0.88712 1.98361 1.93333 1.69219 1.43360 1.21125 0.99784 0.92296 1.00317 1.21318 1.00040 1.00661 0.91341 1.19758 0.98745 0.94312 0.94554 1.21179 1.02174 0.97934 0.93873 0.95448 0.93595 0.90243 0.99166 0.95924 0.92480 0.90454 0.91413 0.89483 0.88088 0.83329 0.83557 0.84474 0.91992 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.26 8.60 127.69 1.10 2.36 16 2 N -0.54 -21.30 4.71 -901.49 -4.25 -25.55 16 3 C 0.17 8.10 3.40 85.56 0.29 8.39 16 4 C -0.51 -29.58 9.01 25.60 0.23 -29.34 16 5 H 0.04 2.52 7.37 -2.91 -0.02 2.49 16 6 C 0.01 0.47 5.47 84.65 0.46 0.93 16 7 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 8 Si 0.94 43.87 27.47 68.60 1.88 45.76 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 12 C 0.08 2.50 2.21 44.94 0.10 2.60 16 13 H 0.07 2.29 7.89 -2.39 -0.02 2.27 16 14 C -0.10 -2.45 4.92 30.61 0.15 -2.29 16 15 C -0.07 -1.38 5.67 29.74 0.17 -1.22 16 16 C -0.07 -1.44 5.74 -19.86 -0.11 -1.56 16 17 C -0.11 -2.14 9.39 22.38 0.21 -1.93 16 18 C -0.05 -0.91 6.31 22.26 0.14 -0.77 16 19 Cl -0.07 -1.27 28.96 -2.72 -0.08 -1.35 16 20 C -0.12 -2.28 9.84 22.22 0.22 -2.06 16 21 C -0.12 -2.50 9.61 22.35 0.21 -2.28 16 22 C -0.07 -1.75 5.74 -19.86 -0.11 -1.87 16 23 C -0.11 -3.17 4.35 29.74 0.13 -3.04 16 24 H 0.03 0.93 6.02 -2.39 -0.01 0.91 16 25 H 0.05 1.96 6.76 -2.39 -0.02 1.94 16 26 H 0.08 2.39 6.72 -2.39 -0.02 2.37 16 27 H -0.01 -0.43 6.38 -2.39 -0.02 -0.45 16 28 H 0.02 1.06 7.36 -2.38 -0.02 1.05 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.56 7.05 -2.39 -0.02 1.54 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.44 8.13 -2.39 -0.02 1.42 16 34 H 0.15 2.22 8.05 -2.91 -0.02 2.20 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.14 2.65 8.05 -2.91 -0.02 2.62 16 37 H 0.06 1.90 7.35 -2.39 -0.02 1.88 16 38 H 0.09 2.37 5.78 -2.38 -0.01 2.36 16 Total: -1.00 -64.81 311.65 2.04 -62.77 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.00 Total: 9.46 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.19 Total: -32.07 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -3.95 Total: -84.57 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -64.81 2.04 -62.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171115156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.838 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds