Wall clock time and date at job start Tue Mar 31 2020 01:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47128 * 2 1 4 4 C 1.53001 * 109.46954 * 119.99996 * 2 1 3 5 5 C 1.53006 * 109.47177 * 294.03483 * 4 2 1 6 6 C 1.50699 * 109.47240 * 184.49232 * 5 4 2 7 7 H 1.08003 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99865 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00239 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99987 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47062 * 89.99563 * 10 8 6 12 12 H 1.48498 * 109.47096 * 209.99712 * 10 8 6 13 13 H 1.48496 * 109.47022 * 329.99521 * 10 8 6 14 14 N 1.46897 * 109.47112 * 239.99602 * 2 1 3 15 15 C 1.48058 * 110.99612 * 171.91655 * 14 2 1 16 16 C 1.51186 * 105.67050 * 213.02805 * 15 14 2 17 17 C 1.38196 * 131.75850 * 197.53069 * 16 15 14 18 18 C 1.38197 * 120.04747 * 179.97438 * 17 16 15 19 19 C 1.38372 * 119.98823 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.01152 * 179.97438 * 19 18 17 21 21 C 1.38341 * 119.97672 * 359.97438 * 19 18 17 22 22 C 1.38160 * 120.01615 * 359.97438 * 21 19 18 23 23 C 1.48046 * 111.00063 * 56.91349 * 14 2 1 24 24 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47200 * 299.99938 * 1 2 3 26 26 H 1.08995 * 109.46745 * 60.00357 * 1 2 3 27 27 H 1.09005 * 109.47536 * 54.02896 * 4 2 1 28 28 H 1.08997 * 109.47335 * 174.03458 * 4 2 1 29 29 H 1.09000 * 109.46866 * 304.49301 * 5 4 2 30 30 H 1.09004 * 109.47107 * 64.49192 * 5 4 2 31 31 H 0.96992 * 120.00038 * 180.02562 * 9 8 6 32 32 H 1.09001 * 110.20836 * 332.07905 * 15 14 2 33 33 H 1.08997 * 110.20586 * 93.98235 * 15 14 2 34 34 H 1.07996 * 119.97377 * 0.02562 * 17 16 15 35 35 H 1.08004 * 120.00296 * 179.97438 * 18 17 16 36 36 H 1.07997 * 119.98666 * 179.97438 * 21 19 18 37 37 H 1.09002 * 110.20820 * 266.02145 * 23 14 2 38 38 H 1.09001 * 110.21046 * 27.83355 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6561 0.0814 2.4940 6 6 2.2523 -0.5699 3.7153 7 1 2.8453 -1.4668 3.6139 8 6 2.0397 -0.0212 4.9622 9 7 1.3171 1.0707 5.0858 10 14 2.7793 -0.8280 6.4760 11 1 4.1281 -0.2611 6.7300 12 1 1.9059 -0.5728 7.6496 13 1 2.8918 -2.2917 6.2518 14 7 2.0197 -0.6926 -1.1994 15 6 3.4868 -0.5462 -1.3346 16 6 3.7579 -0.5068 -2.8215 17 6 4.9157 -0.6981 -3.5513 18 6 4.8881 -0.6048 -4.9299 19 6 3.7005 -0.3191 -5.5801 20 17 3.6653 -0.2010 -7.3117 21 6 2.5414 -0.1275 -4.8497 22 6 2.5692 -0.2220 -3.4716 23 6 1.4852 -0.0656 -2.4294 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.5920 -1.7135 1.3044 28 1 3.1247 -0.8147 1.1975 29 1 2.0369 1.0985 2.4022 30 1 0.5705 0.1070 2.5893 31 1 1.1679 1.4568 5.9629 32 1 3.8174 0.3811 -0.8669 33 1 3.9935 -1.3986 -0.8821 34 1 5.8426 -0.9215 -3.0441 35 1 5.7935 -0.7540 -5.4995 36 1 1.6145 0.0959 -5.3570 37 1 0.5784 -0.5785 -2.7499 38 1 1.2782 0.9901 -2.2546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:42 Heat of formation + Delta-G solvation = -1.598336 kcal Electronic energy + Delta-G solvation = -18811.107590 eV Core-core repulsion = 15870.984530 eV Total energy + Delta-G solvation = -2940.123059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56420 -38.94055 -37.44919 -35.92915 -34.32939 -32.57693 -31.59930 -29.76265 -28.69083 -26.82204 -25.26006 -23.29359 -22.44762 -22.12413 -20.86644 -18.55878 -17.69830 -17.19846 -16.63888 -16.47967 -16.28248 -15.71381 -15.22793 -14.95182 -14.44355 -14.34274 -14.20598 -14.12919 -13.78679 -13.38621 -13.22716 -12.91742 -12.84573 -12.57772 -12.46408 -12.43173 -12.27596 -12.15298 -11.87182 -11.70425 -11.48145 -11.30290 -11.02826 -10.52493 -10.03461 -9.82841 -9.20344 -8.19065 -6.29292 0.06370 0.23578 1.08447 1.40411 1.41330 1.52618 2.41390 2.52942 2.87886 3.14271 3.33077 3.45791 3.90978 4.03576 4.07342 4.21143 4.31449 4.38296 4.44859 4.47049 4.53714 4.70705 4.79441 4.81615 4.90608 4.95283 5.00745 5.04305 5.14621 5.17417 5.21871 5.37068 5.42829 5.53480 5.72317 5.74784 5.85942 5.88099 5.99836 6.28979 6.87745 7.39650 8.92620 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042382 B = 0.002949 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.504666 B = 9490.901317 C = 9983.774907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.034 0.966 4 C -0.085 4.085 5 C 0.030 3.970 6 C -0.542 4.542 7 H 0.057 0.943 8 C 0.000 4.000 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.505 5.505 15 C 0.073 3.927 16 C -0.106 4.106 17 C -0.090 4.090 18 C -0.107 4.107 19 C -0.042 4.042 20 Cl -0.065 7.065 21 C -0.096 4.096 22 C -0.099 4.099 23 C 0.076 3.924 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.048 0.952 29 H -0.012 1.012 30 H 0.001 0.999 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.103 0.897 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 -2.337 -22.904 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 H 0.052 0.948 4 C -0.123 4.123 5 C -0.008 4.008 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.188 1.188 14 N -0.229 5.229 15 C -0.055 4.055 16 C -0.107 4.107 17 C -0.108 4.108 18 C -0.126 4.126 19 C -0.069 4.069 20 Cl -0.036 7.036 21 C -0.115 4.115 22 C -0.100 4.100 23 C -0.051 4.051 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.006 0.994 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.121 0.879 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.532 -2.771 -22.858 23.467 hybrid contribution 0.397 0.799 0.955 1.307 sum 4.929 -1.972 -21.903 22.537 Atomic orbital electron populations 1.21820 0.93349 1.02559 1.01858 1.21861 0.96622 0.94700 0.89577 0.94804 1.21415 0.99473 0.98689 0.92723 1.18990 0.95404 0.94090 0.92309 1.21703 1.32145 1.11132 0.93016 0.92460 1.25939 0.95675 0.95573 1.02531 1.70088 1.40616 1.21974 1.24619 0.85497 0.78323 0.79160 0.78388 1.19808 1.20740 1.18842 1.65340 1.04817 1.51149 1.01547 1.21653 0.89941 1.01922 0.91942 1.20848 0.94641 0.99526 0.95663 1.20710 0.98010 0.99105 0.92986 1.21226 0.97538 0.99716 0.94087 1.20873 0.95572 1.05460 0.84966 1.98370 1.98841 1.96651 1.09697 1.20433 0.98375 1.00821 0.91821 1.20611 0.96115 0.99698 0.93589 1.21679 0.96945 0.98984 0.87485 0.91906 0.93047 0.91009 0.92937 0.93346 0.99402 0.98101 0.92811 0.92300 0.88915 0.82968 0.82477 0.83563 0.87901 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.81 71.98 0.63 -3.67 16 2 C 0.08 2.71 1.75 44.92 0.08 2.79 16 3 H 0.03 1.20 7.87 -2.39 -0.02 1.18 16 4 C -0.09 -3.50 4.73 30.60 0.14 -3.36 16 5 C 0.03 1.54 4.64 29.85 0.14 1.68 16 6 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 7 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 8 C 0.00 0.03 5.46 84.65 0.46 0.49 16 9 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 10 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 14 N -0.50 -14.64 5.30 -871.86 -4.62 -19.26 16 15 C 0.07 1.96 5.55 85.49 0.47 2.44 16 16 C -0.11 -2.48 6.26 -19.67 -0.12 -2.60 16 17 C -0.09 -1.68 10.04 22.25 0.22 -1.46 16 18 C -0.11 -1.82 9.83 22.29 0.22 -1.60 16 19 C -0.04 -0.78 6.32 22.33 0.14 -0.64 16 20 Cl -0.06 -1.07 28.96 -2.72 -0.08 -1.15 16 21 C -0.10 -1.88 9.83 22.28 0.22 -1.66 16 22 C -0.10 -2.26 6.26 -19.68 -0.12 -2.38 16 23 C 0.08 1.81 5.24 85.49 0.45 2.26 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.05 1.81 6.70 -2.39 -0.02 1.80 16 26 H 0.07 1.80 6.91 -2.39 -0.02 1.79 16 27 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.05 1.96 7.24 -2.39 -0.02 1.95 16 29 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.00 0.04 6.81 -2.38 -0.02 0.02 16 31 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.06 1.66 7.64 -2.39 -0.02 1.65 16 33 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 1.55 7.49 -2.39 -0.02 1.53 16 Total: -1.00 -63.38 323.75 1.82 -61.56 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.04 Total: 7.24 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 3.17 Total: -38.39 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -4.33 Total: -75.61 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -63.38 1.82 -61.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.960 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds