Wall clock time and date at job start Tue Mar 31 2020 01:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47383 * 2 1 4 4 C 1.53004 * 109.46855 * 120.00660 * 2 1 3 5 5 C 1.52995 * 109.46605 * 184.99985 * 4 2 1 6 6 C 1.50704 * 109.47006 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99943 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00061 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99988 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47082 * 90.00199 * 10 8 6 12 12 H 1.48499 * 109.46880 * 209.99965 * 10 8 6 13 13 H 1.48496 * 109.47257 * 330.00243 * 10 8 6 14 14 N 1.46898 * 109.46683 * 240.00236 * 2 1 3 15 15 C 1.48049 * 111.00516 * 64.18963 * 14 2 1 16 16 C 1.51186 * 105.67680 * 213.03747 * 15 14 2 17 17 C 1.38185 * 131.77029 * 197.52774 * 16 15 14 18 18 C 1.38224 * 120.06044 * 179.97438 * 17 16 15 19 19 C 1.38232 * 120.01569 * 0.02562 * 18 17 16 20 20 C 1.38340 * 119.98772 * 0.04060 * 19 18 17 21 21 Cl 1.73603 * 120.00037 * 180.02562 * 20 19 18 22 22 C 1.38298 * 120.00301 * 359.89908 * 20 19 18 23 23 C 1.48057 * 111.00198 * 309.18286 * 14 2 1 24 24 H 1.08995 * 109.47336 * 188.48394 * 1 2 3 25 25 H 1.08996 * 109.46822 * 308.48675 * 1 2 3 26 26 H 1.09001 * 109.47045 * 68.48062 * 1 2 3 27 27 H 1.09002 * 109.46605 * 304.99041 * 4 2 1 28 28 H 1.08998 * 109.47431 * 64.99833 * 4 2 1 29 29 H 1.09001 * 109.47508 * 299.99290 * 5 4 2 30 30 H 1.09000 * 109.47827 * 59.99629 * 5 4 2 31 31 H 0.97003 * 119.99962 * 179.97438 * 9 8 6 32 32 H 1.09006 * 110.20397 * 332.08912 * 15 14 2 33 33 H 1.09000 * 110.20909 * 93.97900 * 15 14 2 34 34 H 1.08003 * 119.96744 * 359.97438 * 17 16 15 35 35 H 1.07997 * 119.99279 * 180.02562 * 18 17 16 36 36 H 1.07996 * 120.00659 * 179.97438 * 19 18 17 37 37 H 1.08998 * 110.21091 * 266.01450 * 23 14 2 38 38 H 1.09005 * 110.20325 * 27.91535 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3235 2.5443 7 1 3.3686 -1.8033 3.2138 8 6 5.4183 -1.3605 2.8157 9 7 6.2690 -0.7766 2.0002 10 14 6.0408 -2.2400 4.3416 11 1 6.3202 -3.6613 4.0144 12 1 7.2875 -1.5868 4.8154 13 1 5.0098 -2.1710 5.4080 14 7 2.0196 -0.6925 -1.1995 15 6 1.6291 0.0347 -2.4286 16 6 1.4069 -1.0292 -3.4795 17 6 1.3414 -0.9618 -4.8581 18 6 1.1241 -2.1090 -5.5979 19 6 0.9716 -3.3253 -4.9590 20 6 1.0356 -3.3941 -3.5788 21 17 0.8447 -4.9215 -2.7760 22 6 1.2542 -2.2465 -2.8385 23 6 1.3731 -2.0160 -1.3492 24 1 -0.3634 -1.0164 0.1516 25 1 -0.3633 0.6395 0.8044 26 1 -0.3633 0.3770 -0.9560 27 1 1.6054 -0.2618 2.1369 28 1 1.7516 -1.7717 1.2055 29 1 3.9994 -1.0729 0.4259 30 1 3.8532 0.4368 1.3573 31 1 7.2196 -0.8023 2.1913 32 1 0.7091 0.5941 -2.2587 33 1 2.4284 0.7082 -2.7376 34 1 1.4600 -0.0118 -5.3581 35 1 1.0735 -2.0551 -6.6754 36 1 0.8014 -4.2215 -5.5371 37 1 1.9917 -2.7906 -0.8960 38 1 0.3844 -2.0061 -0.8901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:49 Heat of formation + Delta-G solvation = 24.266872 kcal Electronic energy + Delta-G solvation = -19367.280905 eV Core-core repulsion = 16428.279445 eV Total energy + Delta-G solvation = -2939.001459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.61348 -37.85753 -36.42006 -34.09238 -32.52047 -31.26521 -29.96238 -28.64059 -27.53577 -25.33329 -23.89522 -21.70452 -21.53840 -20.88161 -19.08780 -16.87438 -16.13711 -15.99504 -15.73436 -15.37450 -14.48906 -14.33017 -13.96228 -13.79055 -13.39223 -13.07837 -12.75779 -12.64578 -12.06643 -12.01504 -11.72137 -11.60032 -11.37163 -11.33237 -11.17460 -11.06606 -10.83386 -10.80363 -10.44453 -10.20478 -9.66721 -9.28416 -8.96029 -8.87777 -8.72665 -8.22525 -7.89383 -5.87647 -3.89196 1.06091 1.13548 2.12004 3.38273 3.44302 3.47271 3.48122 4.16443 4.30518 4.53321 4.54866 4.81614 5.10608 5.17887 5.26074 5.32142 5.41998 5.46948 5.47920 5.52974 5.62540 5.72302 5.87079 5.94259 6.05259 6.12970 6.21053 6.23929 6.33122 6.39474 6.60197 6.67015 6.77984 7.11736 7.24943 7.39443 7.84753 8.05994 8.21675 8.56904 9.19517 9.73655 11.23390 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.004484 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.507062 B = 6243.275141 C = 6810.000073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 H 0.085 0.915 4 C -0.100 4.100 5 C 0.028 3.972 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.478 5.478 15 C 0.067 3.933 16 C -0.085 4.085 17 C -0.099 4.099 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.017 4.017 21 Cl -0.071 7.071 22 C -0.085 4.085 23 C 0.069 3.931 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.010 0.990 31 H 0.258 0.742 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -1.242 -14.964 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.039 4.039 3 H 0.103 0.897 4 C -0.138 4.138 5 C -0.009 4.009 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.201 5.201 15 C -0.061 4.061 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.044 4.044 21 Cl -0.042 7.042 22 C -0.087 4.087 23 C -0.059 4.059 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.074 -1.367 -14.809 19.802 hybrid contribution -0.412 -0.597 0.789 1.072 sum -13.486 -1.965 -14.020 19.552 Atomic orbital electron populations 1.22577 0.98626 1.02108 1.01565 1.22127 0.91308 0.99108 0.91352 0.89730 1.21682 1.00953 0.98290 0.92895 1.19014 0.87940 0.96802 0.97117 1.21318 0.91871 1.34177 1.08426 0.93090 1.24986 0.97129 0.95725 0.96484 1.69977 1.02177 1.44265 1.36914 0.86691 0.78295 0.79865 0.83705 1.20777 1.21337 1.20019 1.65575 1.52313 1.01302 1.00884 1.21802 1.00627 0.95069 0.88594 1.20670 0.98703 0.95176 0.94003 1.20576 1.00054 0.98988 0.92179 1.20974 1.00373 0.91632 0.99940 1.20947 1.01556 0.98956 0.91826 1.20359 1.05495 0.86117 0.92429 1.98373 1.95812 1.29878 1.80133 1.20545 0.98741 0.92156 0.97230 1.21816 0.99589 0.94419 0.90028 0.92170 0.91794 0.93021 0.92993 0.93342 0.95016 0.97153 0.93212 0.91617 0.88875 0.85458 0.84975 0.84885 0.88322 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 8.33 37.16 0.31 -2.22 16 2 C 0.07 1.15 2.34 -67.71 -0.16 0.99 16 3 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.10 -2.05 4.61 -26.73 -0.12 -2.18 16 5 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 6 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 10 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 N -0.48 -8.06 4.92 -226.92 -1.12 -9.18 16 15 C 0.07 0.91 6.39 -4.10 -0.03 0.88 16 16 C -0.08 -1.12 6.26 -104.34 -0.65 -1.78 16 17 C -0.10 -1.07 10.04 -39.61 -0.40 -1.47 16 18 C -0.11 -1.08 10.05 -39.59 -0.40 -1.48 16 19 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 20 C -0.02 -0.22 6.32 -39.52 -0.25 -0.47 16 21 Cl -0.07 -0.92 28.79 -51.86 -1.49 -2.41 16 22 C -0.09 -1.24 6.14 -104.30 -0.64 -1.88 16 23 C 0.07 1.09 5.18 -4.10 -0.02 1.07 16 24 H 0.06 0.80 6.19 -51.93 -0.32 0.48 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.62 5.98 -51.93 -0.31 0.31 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.99 7.32 -51.93 -0.38 0.61 16 29 H 0.03 0.90 7.75 -51.93 -0.40 0.50 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.07 0.80 5.74 -51.93 -0.30 0.50 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 38 H 0.07 1.07 5.16 -51.93 -0.27 0.81 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -31.38 319.94 -10.69 -42.07 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.32 Total: -2.33 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.29 Total: -23.29 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.38 Total: -35.99 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.49 Total: -2.41 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.38 -10.69 -42.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.340 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds