Wall clock time and date at job start Tue Mar 31 2020 01:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47383 * 2 1 4 4 C 1.53004 * 109.46855 * 120.00660 * 2 1 3 5 5 C 1.52995 * 109.46605 * 184.99985 * 4 2 1 6 6 C 1.50704 * 109.47006 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99943 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00238 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00061 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99988 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47082 * 90.00199 * 10 8 6 12 12 H 1.48499 * 109.46880 * 209.99965 * 10 8 6 13 13 H 1.48496 * 109.47257 * 330.00243 * 10 8 6 14 14 N 1.46898 * 109.46683 * 240.00236 * 2 1 3 15 15 C 1.48049 * 111.00516 * 64.18963 * 14 2 1 16 16 C 1.51186 * 105.67680 * 213.03747 * 15 14 2 17 17 C 1.38185 * 131.77029 * 197.52774 * 16 15 14 18 18 C 1.38224 * 120.06044 * 179.97438 * 17 16 15 19 19 C 1.38232 * 120.01569 * 0.02562 * 18 17 16 20 20 C 1.38340 * 119.98772 * 0.04060 * 19 18 17 21 21 Cl 1.73603 * 120.00037 * 180.02562 * 20 19 18 22 22 C 1.38298 * 120.00301 * 359.89908 * 20 19 18 23 23 C 1.48057 * 111.00198 * 309.18286 * 14 2 1 24 24 H 1.08995 * 109.47336 * 188.48394 * 1 2 3 25 25 H 1.08996 * 109.46822 * 308.48675 * 1 2 3 26 26 H 1.09001 * 109.47045 * 68.48062 * 1 2 3 27 27 H 1.09002 * 109.46605 * 304.99041 * 4 2 1 28 28 H 1.08998 * 109.47431 * 64.99833 * 4 2 1 29 29 H 1.09001 * 109.47508 * 299.99290 * 5 4 2 30 30 H 1.09000 * 109.47827 * 59.99629 * 5 4 2 31 31 H 0.97003 * 119.99962 * 179.97438 * 9 8 6 32 32 H 1.09006 * 110.20397 * 332.08912 * 15 14 2 33 33 H 1.09000 * 110.20909 * 93.97900 * 15 14 2 34 34 H 1.08003 * 119.96744 * 359.97438 * 17 16 15 35 35 H 1.07997 * 119.99279 * 180.02562 * 18 17 16 36 36 H 1.07996 * 120.00659 * 179.97438 * 19 18 17 37 37 H 1.08998 * 110.21091 * 266.01450 * 23 14 2 38 38 H 1.09005 * 110.20325 * 27.91535 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3235 2.5443 7 1 3.3686 -1.8033 3.2138 8 6 5.4183 -1.3605 2.8157 9 7 6.2690 -0.7766 2.0002 10 14 6.0408 -2.2400 4.3416 11 1 6.3202 -3.6613 4.0144 12 1 7.2875 -1.5868 4.8154 13 1 5.0098 -2.1710 5.4080 14 7 2.0196 -0.6925 -1.1995 15 6 1.6291 0.0347 -2.4286 16 6 1.4069 -1.0292 -3.4795 17 6 1.3414 -0.9618 -4.8581 18 6 1.1241 -2.1090 -5.5979 19 6 0.9716 -3.3253 -4.9590 20 6 1.0356 -3.3941 -3.5788 21 17 0.8447 -4.9215 -2.7760 22 6 1.2542 -2.2465 -2.8385 23 6 1.3731 -2.0160 -1.3492 24 1 -0.3634 -1.0164 0.1516 25 1 -0.3633 0.6395 0.8044 26 1 -0.3633 0.3770 -0.9560 27 1 1.6054 -0.2618 2.1369 28 1 1.7516 -1.7717 1.2055 29 1 3.9994 -1.0729 0.4259 30 1 3.8532 0.4368 1.3573 31 1 7.2196 -0.8023 2.1913 32 1 0.7091 0.5941 -2.2587 33 1 2.4284 0.7082 -2.7376 34 1 1.4600 -0.0118 -5.3581 35 1 1.0735 -2.0551 -6.6754 36 1 0.8014 -4.2215 -5.5371 37 1 1.9917 -2.7906 -0.8960 38 1 0.3844 -2.0061 -0.8901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:48 Heat of formation + Delta-G solvation = 6.272265 kcal Electronic energy + Delta-G solvation = -19368.061210 eV Core-core repulsion = 16428.279445 eV Total energy + Delta-G solvation = -2939.781764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.66414 -38.96988 -37.41199 -35.77708 -34.29416 -32.21253 -31.62082 -29.86920 -28.59874 -27.12738 -25.19780 -23.10416 -22.60716 -22.25171 -20.49684 -18.38211 -17.87830 -17.03345 -16.77561 -16.55628 -16.33754 -15.49988 -15.10465 -14.95295 -14.68161 -14.34079 -14.23369 -13.93203 -13.60093 -13.32704 -13.09778 -12.94533 -12.77770 -12.67980 -12.47437 -12.34202 -12.27806 -12.10140 -11.81096 -11.78452 -11.50661 -11.27222 -10.96090 -10.49882 -9.97904 -9.64641 -9.06450 -8.14319 -6.24867 0.15879 0.22846 1.15844 1.39042 1.40802 1.51445 2.43015 2.59320 2.98151 3.18272 3.33811 3.50079 3.93573 4.04640 4.14223 4.25654 4.32867 4.37030 4.39480 4.42039 4.57739 4.69804 4.75845 4.79466 4.88643 4.93999 4.96357 5.10155 5.21128 5.26484 5.36093 5.41654 5.43901 5.57405 5.82616 5.86283 5.90040 6.00322 6.15764 6.33010 6.94648 7.43363 8.97167 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.004484 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.507062 B = 6243.275141 C = 6810.000073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.076 3.924 3 H 0.080 0.920 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.543 4.543 7 H 0.055 0.945 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.960 3.040 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.263 1.263 14 N -0.512 5.512 15 C 0.070 3.930 16 C -0.098 4.098 17 C -0.097 4.097 18 C -0.099 4.099 19 C -0.115 4.115 20 C -0.033 4.033 21 Cl -0.080 7.080 22 C -0.113 4.113 23 C 0.076 3.924 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.044 0.956 29 H -0.001 1.001 30 H -0.017 1.017 31 H 0.261 0.739 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.063 0.937 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.156 -1.216 -16.214 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.098 0.902 4 C -0.127 4.127 5 C 0.001 3.999 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.187 1.187 14 N -0.236 5.236 15 C -0.057 4.057 16 C -0.099 4.099 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.133 4.133 20 C -0.060 4.060 21 Cl -0.051 7.051 22 C -0.114 4.114 23 C -0.051 4.051 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.017 0.983 30 H 0.002 0.998 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.174 0.826 35 H 0.189 0.811 36 H 0.173 0.827 37 H 0.082 0.918 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.406 -1.341 -16.060 21.616 hybrid contribution 0.031 -0.598 1.088 1.242 sum -14.375 -1.939 -14.973 20.846 Atomic orbital electron populations 1.22436 0.95494 1.02556 1.03160 1.21915 0.93681 0.97958 0.89726 0.90202 1.21479 0.96862 0.98802 0.95565 1.18818 0.91857 0.94272 0.94907 1.21786 0.92517 1.34436 1.09347 0.92672 1.25933 0.97395 0.96448 0.99958 1.70120 1.02569 1.45603 1.38999 0.85536 0.77916 0.78537 0.79590 1.20096 1.20653 1.18682 1.65420 1.53720 1.02258 1.02152 1.21788 1.01369 0.95102 0.87445 1.20773 0.99746 0.94255 0.95107 1.20965 0.98664 1.00788 0.91094 1.21454 0.97987 0.90481 1.01777 1.21317 1.00539 1.00590 0.90858 1.20597 1.06452 0.85469 0.93439 1.98363 1.95907 1.30281 1.80550 1.20501 1.01091 0.93459 0.96346 1.21603 0.98941 0.93073 0.91509 0.92206 0.90528 0.91092 0.92367 0.93756 0.98280 0.99841 0.93010 0.89745 0.88982 0.82629 0.81109 0.82657 0.91837 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.49 8.33 71.98 0.60 -3.89 16 2 C 0.08 2.54 2.34 44.92 0.11 2.65 16 3 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 4 C -0.09 -3.76 4.61 30.59 0.14 -3.62 16 5 C 0.04 2.12 4.86 29.85 0.15 2.27 16 6 C -0.54 -32.21 9.11 25.60 0.23 -31.98 16 7 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 8 C 0.00 0.00 5.46 84.65 0.46 0.46 16 9 N -0.93 -59.07 13.29 21.44 0.28 -58.78 16 10 Si 0.96 45.95 29.54 68.60 2.03 47.97 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 14 N -0.51 -17.75 4.92 -871.85 -4.29 -22.04 16 15 C 0.07 1.87 6.39 85.49 0.55 2.41 16 16 C -0.10 -2.48 6.26 -19.68 -0.12 -2.60 16 17 C -0.10 -1.80 10.04 22.25 0.22 -1.57 16 18 C -0.10 -1.57 10.05 22.27 0.22 -1.34 16 19 C -0.11 -2.22 9.83 22.29 0.22 -2.00 16 20 C -0.03 -0.84 6.32 22.31 0.14 -0.70 16 21 Cl -0.08 -2.09 28.79 -2.72 -0.08 -2.17 16 22 C -0.11 -3.26 6.14 -19.65 -0.12 -3.38 16 23 C 0.08 2.50 5.18 85.49 0.44 2.94 16 24 H 0.06 1.52 6.19 -2.39 -0.01 1.51 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.53 5.98 -2.39 -0.01 1.52 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.04 1.88 7.32 -2.39 -0.02 1.86 16 29 H 0.00 -0.08 7.75 -2.39 -0.02 -0.09 16 30 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.08 1.89 5.74 -2.38 -0.01 1.88 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.06 2.45 8.10 -2.39 -0.02 2.44 16 38 H 0.08 2.39 5.16 -2.38 -0.01 2.38 16 Total: -1.00 -70.34 319.94 2.23 -68.11 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.05 Total: 7.26 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.24 Total: -40.35 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -4.01 Total: -80.83 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.08 Total: -2.17 kcal Total: -70.34 2.23 -68.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.384 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds