Wall clock time and date at job start Tue Mar 31 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47736 * 2 1 4 4 C 1.46903 * 110.99639 * 65.69127 * 3 2 1 5 5 C 1.50698 * 109.47137 * 66.05075 * 4 3 2 6 6 H 1.08006 * 119.99824 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00192 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99896 * 359.72042 * 7 5 4 9 9 Si 1.86796 * 120.00270 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47423 * 59.99744 * 9 7 5 11 11 H 1.48506 * 109.47370 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46937 * 299.99876 * 9 7 5 13 13 C 1.46900 * 110.99886 * 301.74280 * 3 2 1 14 14 H 1.09000 * 110.73038 * 63.98280 * 13 3 2 15 15 C 1.54338 * 110.82242 * 187.38760 * 13 3 2 16 16 C 1.51908 * 104.91422 * 91.93990 * 15 13 3 17 17 C 1.38505 * 130.32237 * 197.15637 * 16 15 13 18 18 C 1.38079 * 120.23282 * 180.02562 * 17 16 15 19 19 C 1.38367 * 119.91753 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 120.04232 * 180.02562 * 19 18 17 21 21 C 1.38217 * 119.91209 * 359.97089 * 19 18 17 22 22 C 1.38227 * 109.80215 * 17.21474 * 16 15 13 23 23 C 1.51366 * 109.75721 * 359.96660 * 22 16 15 24 24 H 1.08995 * 109.47132 * 300.64652 * 1 2 3 25 25 H 1.09000 * 109.46772 * 60.64348 * 1 2 3 26 26 H 1.09003 * 109.47575 * 180.64317 * 1 2 3 27 27 H 1.09002 * 109.47182 * 239.99583 * 2 1 3 28 28 H 1.09002 * 109.47098 * 120.00108 * 2 1 3 29 29 H 1.08995 * 109.47002 * 306.04976 * 4 3 2 30 30 H 1.09002 * 109.47037 * 186.04969 * 4 3 2 31 31 H 0.97002 * 120.00338 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.30312 * 210.79663 * 15 13 3 33 33 H 1.08999 * 110.30566 * 332.94891 * 15 13 3 34 34 H 1.08001 * 119.88299 * 0.05008 * 17 16 15 35 35 H 1.08004 * 120.03671 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.89414 * 180.02562 * 21 19 18 37 37 H 1.09007 * 110.29905 * 223.89390 * 23 22 16 38 38 H 1.09005 * 110.38856 * 101.78713 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6630 2.0694 1.2499 5 6 2.3969 1.4297 2.4001 6 1 3.0616 0.5975 2.2207 7 6 2.2199 1.9066 3.6816 8 7 1.4148 2.9235 3.8994 9 14 3.1301 1.1141 5.1073 10 1 4.5939 1.2241 4.8825 11 1 2.7694 1.8059 6.3708 12 1 2.7502 -0.3184 5.2020 13 6 1.5150 2.1218 -1.1663 14 1 0.4293 2.2097 -1.1269 15 6 2.1749 3.5136 -1.2635 16 6 3.3899 3.3091 -2.1520 17 6 4.5110 4.1019 -2.3338 18 6 5.5055 3.7099 -3.2078 19 6 5.3826 2.5208 -3.9045 20 17 6.6312 2.0245 -5.0037 21 6 4.2649 1.7281 -3.7233 22 6 3.2660 2.1217 -2.8488 23 6 1.9635 1.4450 -2.4790 24 1 -0.3633 0.5238 0.8841 25 1 -0.3633 0.5038 -0.8957 26 1 -0.3634 -1.0276 0.0115 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5886 1.9886 1.4145 30 1 1.9419 3.1209 1.1807 31 1 1.2899 3.2589 4.8009 32 1 1.4878 4.2270 -1.7186 33 1 2.4789 3.8580 -0.2750 34 1 4.6078 5.0298 -1.7896 35 1 6.3781 4.3308 -3.3474 36 1 4.1695 0.7998 -4.2669 37 1 2.1234 0.3786 -2.3192 38 1 1.2188 1.6025 -3.2593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172720651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:45 Heat of formation + Delta-G solvation = 20.884644 kcal Electronic energy + Delta-G solvation = -19587.744079 eV Core-core repulsion = 16648.595955 eV Total energy + Delta-G solvation = -2939.148124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11810 -37.63318 -36.37258 -33.98754 -32.49030 -31.34782 -29.49758 -28.30577 -26.94732 -25.89683 -23.11161 -22.42027 -21.25839 -20.74354 -18.63167 -16.48389 -16.31031 -15.82802 -15.52580 -15.13564 -14.58425 -14.00009 -13.80512 -13.43957 -13.18876 -13.05350 -12.70005 -12.34250 -12.17637 -11.87263 -11.51768 -11.36309 -11.26577 -11.17348 -11.06863 -10.91886 -10.69873 -10.66601 -10.54484 -10.27874 -10.02239 -9.63292 -9.19396 -8.70748 -8.42559 -8.21322 -7.17771 -6.03257 -4.03533 1.34127 1.44653 2.18477 3.33133 3.37293 3.40601 3.77525 4.41464 4.60584 4.77824 4.86365 5.02699 5.22530 5.32667 5.40091 5.44790 5.67927 5.71462 5.78209 5.83070 5.90882 5.97905 6.05553 6.06281 6.18819 6.32769 6.36589 6.39704 6.40249 6.53095 6.67181 6.83535 6.88073 6.98014 7.30031 7.40763 7.81019 8.11090 8.20488 8.55845 9.03609 9.60326 11.07433 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.004540 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.443343 B = 6166.304096 C = 6672.719175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.525 5.525 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.082 3.918 14 H 0.050 0.950 15 C -0.084 4.084 16 C -0.065 4.065 17 C -0.098 4.098 18 C -0.114 4.114 19 C -0.040 4.040 20 Cl -0.084 7.084 21 C -0.102 4.102 22 C -0.070 4.070 23 C -0.079 4.079 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.083 0.917 29 H -0.003 1.003 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 -0.188 -15.366 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.070 4.070 3 N -0.249 5.249 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.028 4.028 14 H 0.068 0.932 15 C -0.121 4.121 16 C -0.065 4.065 17 C -0.116 4.116 18 C -0.133 4.133 19 C -0.067 4.067 20 Cl -0.055 7.055 21 C -0.121 4.121 22 C -0.070 4.070 23 C -0.116 4.116 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.015 0.985 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.320 -0.118 -15.343 15.698 hybrid contribution -0.223 -0.382 0.852 0.960 sum 3.098 -0.500 -14.491 14.826 Atomic orbital electron populations 1.22392 0.99465 1.01030 1.01816 1.22028 0.91966 0.91519 1.01525 1.62336 1.58350 1.01494 1.02725 1.19803 0.94754 0.94582 0.84529 1.21106 1.25867 1.16423 0.90900 0.92055 1.24948 0.95514 0.95164 0.98845 1.69939 1.37338 1.25193 1.21437 0.86607 0.80303 0.79343 0.81432 1.20214 1.21407 1.20333 1.22206 0.96457 0.92927 0.91171 0.93194 1.21405 0.93325 0.97337 1.00014 1.20842 0.95487 0.94264 0.95890 1.20576 0.92757 1.00141 0.98149 1.20827 0.99766 0.95511 0.97211 1.20611 0.91651 0.97001 0.97410 1.98341 1.53037 1.91461 1.62665 1.20370 0.92367 0.99728 0.99608 1.20456 0.95767 0.95670 0.95094 1.21258 0.92786 1.00826 0.96762 0.91551 0.93675 0.93423 0.92739 0.89885 0.98524 0.94916 0.92935 0.90406 0.88428 0.85427 0.85285 0.85661 0.89676 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.24 37.15 0.34 -2.81 16 2 C 0.06 1.06 5.61 -3.83 -0.02 1.04 16 3 N -0.52 -10.61 4.59 -226.40 -1.04 -11.65 16 4 C 0.19 4.61 4.42 -4.97 -0.02 4.59 16 5 C -0.50 -13.73 8.43 -34.44 -0.29 -14.02 16 6 H 0.06 1.68 7.14 -52.48 -0.37 1.30 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.08 1.36 2.14 -66.31 -0.14 1.22 16 14 H 0.05 0.83 6.60 -51.93 -0.34 0.49 16 15 C -0.08 -1.35 6.32 -26.59 -0.17 -1.52 16 16 C -0.06 -1.00 6.15 -103.93 -0.64 -1.64 16 17 C -0.10 -1.37 10.04 -39.54 -0.40 -1.77 16 18 C -0.11 -1.50 9.83 -39.59 -0.39 -1.89 16 19 C -0.04 -0.54 6.32 -39.54 -0.25 -0.79 16 20 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 16 21 C -0.10 -1.41 9.82 -39.50 -0.39 -1.79 16 22 C -0.07 -1.03 6.14 -104.21 -0.64 -1.67 16 23 C -0.08 -1.12 6.30 -26.85 -0.17 -1.29 16 24 H 0.07 1.29 6.39 -51.93 -0.33 0.96 16 25 H 0.04 0.68 6.51 -51.93 -0.34 0.34 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.88 6.04 -51.93 -0.31 0.56 16 28 H 0.08 1.70 6.72 -51.93 -0.35 1.35 16 29 H 0.00 -0.08 6.19 -51.93 -0.32 -0.40 16 30 H 0.03 0.86 5.91 -51.93 -0.31 0.55 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.82 5.92 -51.93 -0.31 1.51 16 34 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.08 1.20 5.75 -51.93 -0.30 0.90 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -28.56 313.99 -10.32 -38.88 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.96 Total: 0.33 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -3.27 Total: -20.88 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.30 Total: -36.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.56 -10.32 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172720651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.763 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds