Wall clock time and date at job start Tue Mar 31 2020 01:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46900 * 109.47736 * 2 1 4 4 C 1.46903 * 110.99639 * 65.69127 * 3 2 1 5 5 C 1.50698 * 109.47137 * 66.05075 * 4 3 2 6 6 H 1.08006 * 119.99824 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00192 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99896 * 359.72042 * 7 5 4 9 9 Si 1.86796 * 120.00270 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47423 * 59.99744 * 9 7 5 11 11 H 1.48506 * 109.47370 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46937 * 299.99876 * 9 7 5 13 13 C 1.46900 * 110.99886 * 301.74280 * 3 2 1 14 14 H 1.09000 * 110.73038 * 63.98280 * 13 3 2 15 15 C 1.54338 * 110.82242 * 187.38760 * 13 3 2 16 16 C 1.51908 * 104.91422 * 91.93990 * 15 13 3 17 17 C 1.38505 * 130.32237 * 197.15637 * 16 15 13 18 18 C 1.38079 * 120.23282 * 180.02562 * 17 16 15 19 19 C 1.38367 * 119.91753 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 120.04232 * 180.02562 * 19 18 17 21 21 C 1.38217 * 119.91209 * 359.97089 * 19 18 17 22 22 C 1.38227 * 109.80215 * 17.21474 * 16 15 13 23 23 C 1.51366 * 109.75721 * 359.96660 * 22 16 15 24 24 H 1.08995 * 109.47132 * 300.64652 * 1 2 3 25 25 H 1.09000 * 109.46772 * 60.64348 * 1 2 3 26 26 H 1.09003 * 109.47575 * 180.64317 * 1 2 3 27 27 H 1.09002 * 109.47182 * 239.99583 * 2 1 3 28 28 H 1.09002 * 109.47098 * 120.00108 * 2 1 3 29 29 H 1.08995 * 109.47002 * 306.04976 * 4 3 2 30 30 H 1.09002 * 109.47037 * 186.04969 * 4 3 2 31 31 H 0.97002 * 120.00338 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.30312 * 210.79663 * 15 13 3 33 33 H 1.08999 * 110.30566 * 332.94891 * 15 13 3 34 34 H 1.08001 * 119.88299 * 0.05008 * 17 16 15 35 35 H 1.08004 * 120.03671 * 179.97438 * 18 17 16 36 36 H 1.08001 * 119.89414 * 180.02562 * 21 19 18 37 37 H 1.09007 * 110.29905 * 223.89390 * 23 22 16 38 38 H 1.09005 * 110.38856 * 101.78713 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6630 2.0694 1.2499 5 6 2.3969 1.4297 2.4001 6 1 3.0616 0.5975 2.2207 7 6 2.2199 1.9066 3.6816 8 7 1.4148 2.9235 3.8994 9 14 3.1301 1.1141 5.1073 10 1 4.5939 1.2241 4.8825 11 1 2.7694 1.8059 6.3708 12 1 2.7502 -0.3184 5.2020 13 6 1.5150 2.1218 -1.1663 14 1 0.4293 2.2097 -1.1269 15 6 2.1749 3.5136 -1.2635 16 6 3.3899 3.3091 -2.1520 17 6 4.5110 4.1019 -2.3338 18 6 5.5055 3.7099 -3.2078 19 6 5.3826 2.5208 -3.9045 20 17 6.6312 2.0245 -5.0037 21 6 4.2649 1.7281 -3.7233 22 6 3.2660 2.1217 -2.8488 23 6 1.9635 1.4450 -2.4790 24 1 -0.3633 0.5238 0.8841 25 1 -0.3633 0.5038 -0.8957 26 1 -0.3634 -1.0276 0.0115 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5886 1.9886 1.4145 30 1 1.9419 3.1209 1.1807 31 1 1.2899 3.2589 4.8009 32 1 1.4878 4.2270 -1.7186 33 1 2.4789 3.8580 -0.2750 34 1 4.6078 5.0298 -1.7896 35 1 6.3781 4.3308 -3.3474 36 1 4.1695 0.7998 -4.2669 37 1 2.1234 0.3786 -2.3192 38 1 1.2188 1.6025 -3.2593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172720651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:44 Heat of formation + Delta-G solvation = 5.955508 kcal Electronic energy + Delta-G solvation = -19588.391455 eV Core-core repulsion = 16648.595955 eV Total energy + Delta-G solvation = -2939.795500 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29550 -38.97156 -37.44699 -35.39750 -34.40714 -32.46477 -31.01200 -29.71900 -28.15938 -27.61439 -24.78333 -23.76394 -22.61393 -21.85894 -20.06446 -18.37789 -17.52390 -17.32604 -16.75195 -16.63535 -16.08842 -15.47195 -15.10582 -14.74418 -14.49905 -14.32013 -13.95160 -13.78298 -13.57933 -13.47772 -13.04205 -12.82952 -12.62543 -12.54677 -12.52815 -12.34223 -12.21018 -12.09589 -11.80084 -11.72738 -11.54275 -11.21900 -11.16636 -10.54238 -9.76413 -9.31387 -8.81358 -8.16145 -6.23775 0.25224 0.38603 1.16877 1.40992 1.43060 1.50709 2.41876 2.69193 3.16245 3.33787 3.47038 3.63568 4.02711 4.05789 4.21735 4.30598 4.38603 4.49271 4.51064 4.64453 4.71201 4.76539 4.79775 4.85400 4.95805 5.01009 5.11260 5.16195 5.20170 5.29108 5.31957 5.35112 5.45270 5.55776 5.72128 5.73026 5.89863 6.15451 6.46207 6.77861 6.92731 7.44808 8.93958 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.004540 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.443343 B = 6166.304096 C = 6672.719175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.056 3.944 3 N -0.533 5.533 4 C 0.205 3.795 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.959 3.041 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.076 3.924 14 H 0.052 0.948 15 C -0.082 4.082 16 C -0.087 4.087 17 C -0.107 4.107 18 C -0.115 4.115 19 C -0.046 4.046 20 Cl -0.070 7.070 21 C -0.105 4.105 22 C -0.079 4.079 23 C -0.068 4.068 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.056 0.944 29 H -0.027 1.027 30 H 0.010 0.990 31 H 0.262 0.738 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -1.252 -16.946 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.071 4.071 3 N -0.258 5.258 4 C 0.079 3.921 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.194 1.194 13 C -0.032 4.032 14 H 0.070 0.930 15 C -0.119 4.119 16 C -0.087 4.087 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.072 4.072 20 Cl -0.041 7.041 21 C -0.124 4.124 22 C -0.080 4.080 23 C -0.105 4.105 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.074 0.926 29 H -0.009 1.009 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.107 0.893 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.086 -1.196 -16.943 17.470 hybrid contribution -0.420 -0.033 1.257 1.326 sum 3.666 -1.229 -15.686 16.155 Atomic orbital electron populations 1.22271 0.98183 1.02235 1.00961 1.22057 0.93057 0.90360 1.01667 1.62220 1.59092 1.02388 1.02074 1.19401 0.92781 0.93584 0.86286 1.21431 1.25760 1.16247 0.92148 0.92575 1.25764 0.96306 0.95664 1.01509 1.70060 1.38741 1.26527 1.21998 0.85595 0.79024 0.78735 0.78217 1.19801 1.20927 1.19405 1.22313 0.96557 0.93311 0.91064 0.92979 1.21332 0.94435 0.97498 0.98601 1.20896 0.95830 0.95380 0.96607 1.20787 0.92654 1.00572 0.98503 1.21076 1.00052 0.95697 0.96499 1.20776 0.91959 0.97030 0.97462 1.98347 1.52346 1.91328 1.62094 1.20566 0.92020 1.00394 0.99387 1.20571 0.96382 0.95490 0.95520 1.21202 0.93248 1.00431 0.95609 0.95142 0.91756 0.91078 0.89662 0.92588 1.00931 0.97214 0.92890 0.88530 0.91898 0.84444 0.83238 0.83886 0.89274 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.81 9.24 71.98 0.66 -5.14 16 2 C 0.06 2.04 5.61 86.30 0.48 2.52 16 3 N -0.53 -21.78 4.59 -870.20 -4.00 -25.77 16 4 C 0.21 10.51 4.42 85.56 0.38 10.89 16 5 C -0.52 -28.96 8.43 25.60 0.22 -28.75 16 6 H 0.06 3.13 7.14 -2.91 -0.02 3.11 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 9 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.08 2.50 2.14 45.83 0.10 2.60 16 14 H 0.05 1.69 6.60 -2.39 -0.02 1.68 16 15 C -0.08 -2.66 6.32 30.69 0.19 -2.46 16 16 C -0.09 -2.63 6.15 -19.42 -0.12 -2.75 16 17 C -0.11 -2.91 10.04 22.30 0.22 -2.68 16 18 C -0.11 -2.80 9.83 22.26 0.22 -2.58 16 19 C -0.05 -1.13 6.32 22.30 0.14 -0.99 16 20 Cl -0.07 -1.51 28.96 -2.72 -0.08 -1.59 16 21 C -0.11 -2.65 9.82 22.32 0.22 -2.43 16 22 C -0.08 -2.21 6.14 -19.60 -0.12 -2.33 16 23 C -0.07 -1.76 6.30 30.52 0.19 -1.57 16 24 H 0.03 1.20 6.39 -2.39 -0.02 1.18 16 25 H 0.06 1.83 6.51 -2.39 -0.02 1.82 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.09 2.55 6.04 -2.39 -0.01 2.54 16 28 H 0.06 2.31 6.72 -2.39 -0.02 2.29 16 29 H -0.03 -1.48 6.19 -2.39 -0.01 -1.50 16 30 H 0.01 0.55 5.91 -2.39 -0.01 0.53 16 31 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.06 2.48 5.92 -2.39 -0.01 2.47 16 34 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.09 2.23 5.75 -2.38 -0.01 2.22 16 38 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -62.39 313.99 2.55 -59.84 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.07 Total: 11.17 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 3.25 Total: -34.89 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.71 Total: -80.98 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -62.39 2.55 -59.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172720651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.795 kcal (2) G-P(sol) polarization free energy of solvation -62.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds