Wall clock time and date at job start Tue Mar 31 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.46977 * 2 1 4 4 C 1.46894 * 110.99818 * 195.74087 * 3 2 1 5 5 C 1.50701 * 109.47137 * 76.31933 * 4 3 2 6 6 H 1.07999 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00016 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99873 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00137 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47215 * 270.00109 * 9 7 5 11 11 H 1.48498 * 109.47438 * 30.00082 * 9 7 5 12 12 H 1.48501 * 109.47239 * 150.00326 * 9 7 5 13 13 C 1.46903 * 110.99611 * 71.79150 * 3 2 1 14 14 H 1.09001 * 110.72850 * 310.65816 * 13 3 2 15 15 C 1.54344 * 110.82072 * 187.03492 * 13 3 2 16 16 C 1.51374 * 105.17189 * 215.42062 * 15 13 3 17 17 C 1.38508 * 130.37378 * 197.16917 * 16 15 13 18 18 C 1.38075 * 120.23572 * 180.02562 * 17 16 15 19 19 C 1.38373 * 119.91905 * 359.97438 * 18 17 16 20 20 Cl 1.73604 * 120.04637 * 179.97438 * 19 18 17 21 21 C 1.38221 * 119.90901 * 359.97438 * 19 18 17 22 22 C 1.38227 * 109.75445 * 17.19880 * 16 15 13 23 23 C 1.51376 * 109.75639 * 359.97438 * 22 16 15 24 24 H 1.09001 * 109.47133 * 54.29194 * 1 2 3 25 25 H 1.09007 * 109.47150 * 174.28899 * 1 2 3 26 26 H 1.08999 * 109.47347 * 294.28823 * 1 2 3 27 27 H 1.08997 * 109.47026 * 240.00353 * 2 1 3 28 28 H 1.08996 * 109.47229 * 120.00337 * 2 1 3 29 29 H 1.08995 * 109.47586 * 316.31498 * 4 3 2 30 30 H 1.09007 * 109.47093 * 196.31182 * 4 3 2 31 31 H 0.97001 * 120.00121 * 179.97438 * 8 7 5 32 32 H 1.08997 * 110.30512 * 334.34909 * 15 13 3 33 33 H 1.08996 * 110.30382 * 96.49874 * 15 13 3 34 34 H 1.08005 * 119.88510 * 0.05230 * 17 16 15 35 35 H 1.08001 * 120.04404 * 179.97438 * 18 17 16 36 36 H 1.07997 * 119.89881 * 180.02562 * 21 19 18 37 37 H 1.09003 * 110.30130 * 223.89198 * 23 22 16 38 38 H 1.09000 * 110.29950 * 101.73991 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4395 1.4413 -0.3720 5 6 3.5767 1.2510 -1.8607 6 1 2.6971 1.1026 -2.4694 7 6 4.8253 1.2653 -2.4453 8 7 4.9451 1.0987 -3.7444 9 14 6.3468 1.5212 -1.3924 10 1 6.6467 2.9727 -1.3003 11 1 6.1042 0.9787 -0.0315 12 1 7.4994 0.8159 -2.0082 13 6 1.7910 2.0241 1.3028 14 1 0.7615 1.8769 1.6294 15 6 2.1441 3.5256 1.2468 16 6 2.7288 3.8460 2.6058 17 6 2.9243 5.0650 3.2336 18 6 3.4846 5.1158 4.4946 19 6 3.8518 3.9450 5.1343 20 17 4.5571 4.0050 6.7194 21 6 3.6562 2.7277 4.5094 22 6 3.0960 2.6762 3.2440 23 6 2.7826 1.4897 2.3578 24 1 -0.3633 0.5998 -0.8345 25 1 -0.3634 -1.0226 -0.1023 26 1 -0.3634 0.4227 0.9367 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.9828 0.6516 0.1468 30 1 3.8508 2.4107 -0.0904 31 1 5.8234 1.1091 -4.1558 32 1 2.8801 3.7121 0.4648 33 1 1.2466 4.1188 1.0718 34 1 2.6372 5.9792 2.7352 35 1 3.6361 6.0680 4.9810 36 1 3.9425 1.8140 5.0090 37 1 2.3213 0.6930 2.9415 38 1 3.6903 1.1285 1.8744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172720652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:48 Heat of formation + Delta-G solvation = 21.629317 kcal Electronic energy + Delta-G solvation = -19581.419034 eV Core-core repulsion = 16642.303201 eV Total energy + Delta-G solvation = -2939.115832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.34949 -37.79305 -36.49464 -33.92765 -32.56502 -31.47439 -30.26757 -28.45618 -27.21852 -26.19238 -22.73568 -22.18984 -21.55825 -20.92289 -18.78543 -17.14976 -16.49020 -15.95889 -15.39148 -15.13764 -14.56747 -14.09716 -13.76153 -13.63981 -13.36368 -13.17896 -13.09854 -12.70232 -12.49678 -12.04004 -11.81013 -11.45933 -11.29762 -11.26306 -11.19569 -10.99561 -10.83395 -10.72006 -10.55343 -10.37097 -10.00896 -9.90397 -9.32939 -8.89000 -8.58984 -8.35633 -7.42791 -6.07812 -4.04699 1.14051 1.25741 2.03670 3.25269 3.33199 3.34909 3.58552 4.37237 4.39230 4.50374 4.84841 4.98583 5.14223 5.22263 5.23755 5.28215 5.32478 5.60026 5.67009 5.68151 5.83095 5.88184 5.97452 5.99804 6.05471 6.16182 6.21544 6.21871 6.28591 6.44888 6.58117 6.63825 6.64866 6.79565 6.84074 6.92760 7.60212 7.84901 7.99649 8.62959 9.03266 9.54214 11.05405 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.005201 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.611700 B = 5382.590621 C = 6294.832980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.514 5.514 4 C 0.157 3.843 5 C -0.506 4.506 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.868 3.132 10 H -0.276 1.276 11 H -0.268 1.268 12 H -0.286 1.286 13 C 0.087 3.913 14 H 0.088 0.912 15 C -0.083 4.083 16 C -0.081 4.081 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.039 4.039 20 Cl -0.080 7.080 21 C -0.102 4.102 22 C -0.075 4.075 23 C -0.125 4.125 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.022 0.978 29 H -0.007 1.007 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 4.562 17.030 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.236 5.236 4 C 0.031 3.969 5 C -0.545 4.545 6 H 0.100 0.900 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.696 3.304 10 H -0.201 1.201 11 H -0.193 1.193 12 H -0.211 1.211 13 C -0.023 4.023 14 H 0.106 0.894 15 C -0.120 4.120 16 C -0.082 4.082 17 C -0.116 4.116 18 C -0.133 4.133 19 C -0.065 4.065 20 Cl -0.051 7.051 21 C -0.121 4.121 22 C -0.076 4.076 23 C -0.163 4.163 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.040 0.960 29 H 0.010 0.990 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.170 4.798 16.637 18.070 hybrid contribution 1.617 -0.267 1.346 2.121 sum -3.553 4.531 17.983 18.882 Atomic orbital electron populations 1.21789 0.96187 1.00722 1.01507 1.21987 0.94656 0.89595 1.01024 1.62116 1.21234 1.16501 1.23758 1.20284 0.83603 0.95588 0.97444 1.21028 0.94372 1.48803 0.90274 0.90046 1.24876 0.98562 0.94990 0.94721 1.69888 1.23852 1.50529 1.09549 0.86972 0.83543 0.78803 0.81123 1.20122 1.19313 1.21135 1.22430 0.97854 0.93382 0.88670 0.89410 1.21259 1.01442 0.96263 0.93000 1.20895 0.97585 0.92930 0.96785 1.20582 0.99456 0.97403 0.94119 1.20866 1.00185 0.96992 0.95268 1.20665 1.03016 0.95060 0.87791 1.98350 1.82884 1.98849 1.25001 1.20458 1.00428 0.96565 0.94624 1.20561 0.97191 0.96633 0.93223 1.21997 1.02064 0.95555 0.96706 0.91828 0.93162 0.93795 0.89499 0.96025 0.98978 0.95483 0.92659 0.87959 0.90266 0.85194 0.85058 0.85456 0.90971 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.87 37.16 0.37 -1.71 16 2 C 0.06 0.97 5.43 -3.83 -0.02 0.95 16 3 N -0.51 -9.89 4.39 -226.41 -0.99 -10.88 16 4 C 0.16 3.57 2.42 -4.98 -0.01 3.56 16 5 C -0.51 -13.89 9.11 -34.44 -0.31 -14.20 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 9 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.09 1.37 3.02 -66.31 -0.20 1.17 16 14 H 0.09 1.26 6.58 -51.93 -0.34 0.92 16 15 C -0.08 -1.26 6.19 -26.85 -0.17 -1.43 16 16 C -0.08 -1.17 6.14 -104.20 -0.64 -1.81 16 17 C -0.10 -1.21 10.04 -39.54 -0.40 -1.61 16 18 C -0.11 -1.36 9.83 -39.59 -0.39 -1.75 16 19 C -0.04 -0.49 6.32 -39.54 -0.25 -0.74 16 20 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 21 C -0.10 -1.38 9.82 -39.50 -0.39 -1.76 16 22 C -0.08 -1.11 6.14 -104.20 -0.64 -1.75 16 23 C -0.12 -1.91 5.42 -26.85 -0.15 -2.05 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.57 6.83 -51.93 -0.35 0.21 16 27 H 0.09 1.74 7.37 -51.93 -0.38 1.36 16 28 H 0.02 0.35 7.40 -51.93 -0.38 -0.03 16 29 H -0.01 -0.17 5.81 -51.93 -0.30 -0.47 16 30 H 0.03 0.63 5.24 -51.93 -0.27 0.35 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.10 1.81 5.99 -51.93 -0.31 1.50 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.66 5.66 -51.93 -0.29 1.36 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -29.01 314.72 -10.13 -39.14 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.19 Total: 0.44 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -3.29 Total: -21.24 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.22 Total: -37.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.01 -10.13 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172720652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.770 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds