Wall clock time and date at job start Tue Mar 31 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.46977 * 2 1 4 4 C 1.46894 * 110.99818 * 195.74087 * 3 2 1 5 5 C 1.50701 * 109.47137 * 76.31933 * 4 3 2 6 6 H 1.07999 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00016 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99873 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00137 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47215 * 270.00109 * 9 7 5 11 11 H 1.48498 * 109.47438 * 30.00082 * 9 7 5 12 12 H 1.48501 * 109.47239 * 150.00326 * 9 7 5 13 13 C 1.46903 * 110.99611 * 71.79150 * 3 2 1 14 14 H 1.09001 * 110.72850 * 310.65816 * 13 3 2 15 15 C 1.54344 * 110.82072 * 187.03492 * 13 3 2 16 16 C 1.51374 * 105.17189 * 215.42062 * 15 13 3 17 17 C 1.38508 * 130.37378 * 197.16917 * 16 15 13 18 18 C 1.38075 * 120.23572 * 180.02562 * 17 16 15 19 19 C 1.38373 * 119.91905 * 359.97438 * 18 17 16 20 20 Cl 1.73604 * 120.04637 * 179.97438 * 19 18 17 21 21 C 1.38221 * 119.90901 * 359.97438 * 19 18 17 22 22 C 1.38227 * 109.75445 * 17.19880 * 16 15 13 23 23 C 1.51376 * 109.75639 * 359.97438 * 22 16 15 24 24 H 1.09001 * 109.47133 * 54.29194 * 1 2 3 25 25 H 1.09007 * 109.47150 * 174.28899 * 1 2 3 26 26 H 1.08999 * 109.47347 * 294.28823 * 1 2 3 27 27 H 1.08997 * 109.47026 * 240.00353 * 2 1 3 28 28 H 1.08996 * 109.47229 * 120.00337 * 2 1 3 29 29 H 1.08995 * 109.47586 * 316.31498 * 4 3 2 30 30 H 1.09007 * 109.47093 * 196.31182 * 4 3 2 31 31 H 0.97001 * 120.00121 * 179.97438 * 8 7 5 32 32 H 1.08997 * 110.30512 * 334.34909 * 15 13 3 33 33 H 1.08996 * 110.30382 * 96.49874 * 15 13 3 34 34 H 1.08005 * 119.88510 * 0.05230 * 17 16 15 35 35 H 1.08001 * 120.04404 * 179.97438 * 18 17 16 36 36 H 1.07997 * 119.89881 * 180.02562 * 21 19 18 37 37 H 1.09003 * 110.30130 * 223.89198 * 23 22 16 38 38 H 1.09000 * 110.29950 * 101.73991 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4395 1.4413 -0.3720 5 6 3.5767 1.2510 -1.8607 6 1 2.6971 1.1026 -2.4694 7 6 4.8253 1.2653 -2.4453 8 7 4.9451 1.0987 -3.7444 9 14 6.3468 1.5212 -1.3924 10 1 6.6467 2.9727 -1.3003 11 1 6.1042 0.9787 -0.0315 12 1 7.4994 0.8159 -2.0082 13 6 1.7910 2.0241 1.3028 14 1 0.7615 1.8769 1.6294 15 6 2.1441 3.5256 1.2468 16 6 2.7288 3.8460 2.6058 17 6 2.9243 5.0650 3.2336 18 6 3.4846 5.1158 4.4946 19 6 3.8518 3.9450 5.1343 20 17 4.5571 4.0050 6.7194 21 6 3.6562 2.7277 4.5094 22 6 3.0960 2.6762 3.2440 23 6 2.7826 1.4897 2.3578 24 1 -0.3633 0.5998 -0.8345 25 1 -0.3634 -1.0226 -0.1023 26 1 -0.3634 0.4227 0.9367 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.9828 0.6516 0.1468 30 1 3.8508 2.4107 -0.0904 31 1 5.8234 1.1091 -4.1558 32 1 2.8801 3.7121 0.4648 33 1 1.2466 4.1188 1.0718 34 1 2.6372 5.9792 2.7352 35 1 3.6361 6.0680 4.9810 36 1 3.9425 1.8140 5.0090 37 1 2.3213 0.6930 2.9415 38 1 3.6903 1.1285 1.8744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172720652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:47 Heat of formation + Delta-G solvation = 5.709363 kcal Electronic energy + Delta-G solvation = -19582.109375 eV Core-core repulsion = 16642.303201 eV Total energy + Delta-G solvation = -2939.806173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.47200 -39.04255 -37.49269 -35.25277 -34.53305 -32.49198 -31.78433 -29.89982 -28.33660 -27.71603 -24.13385 -23.78556 -22.71721 -21.96522 -20.20763 -19.12816 -17.57514 -17.22006 -16.70617 -16.31320 -16.20827 -15.66070 -15.00677 -14.95247 -14.59246 -14.47743 -14.36024 -14.13795 -13.88795 -13.44037 -13.10075 -12.86685 -12.60308 -12.51908 -12.42152 -12.24888 -12.21745 -12.03314 -11.88508 -11.87572 -11.69025 -11.40555 -11.30110 -10.76484 -9.87813 -9.40440 -8.95720 -8.27927 -6.29125 0.13290 0.27545 1.09779 1.31212 1.32620 1.41760 2.31921 2.58170 3.03986 3.08340 3.41044 3.77680 3.94566 4.01005 4.06589 4.16843 4.28636 4.38644 4.50897 4.59678 4.60470 4.64566 4.75619 4.82024 4.85444 4.95160 4.98887 5.04452 5.13513 5.20075 5.23416 5.27952 5.31802 5.46576 5.59653 5.62018 5.80293 6.03346 6.45073 6.68063 6.78346 7.33932 8.89050 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.005201 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.611700 B = 5382.590621 C = 6294.832980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 N -0.528 5.528 4 C 0.173 3.827 5 C -0.509 4.509 6 H 0.039 0.961 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.934 3.066 10 H -0.267 1.267 11 H -0.254 1.254 12 H -0.282 1.282 13 C 0.086 3.914 14 H 0.110 0.890 15 C -0.080 4.080 16 C -0.095 4.095 17 C -0.096 4.096 18 C -0.110 4.110 19 C -0.044 4.044 20 Cl -0.068 7.068 21 C -0.108 4.108 22 C -0.090 4.090 23 C -0.118 4.118 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.036 0.964 29 H -0.011 1.011 30 H 0.029 0.971 31 H 0.266 0.734 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 5.596 20.042 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 N -0.251 5.251 4 C 0.046 3.954 5 C -0.547 4.547 6 H 0.057 0.943 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.758 3.242 10 H -0.192 1.192 11 H -0.178 1.178 12 H -0.208 1.208 13 C -0.023 4.023 14 H 0.128 0.872 15 C -0.117 4.117 16 C -0.095 4.095 17 C -0.114 4.114 18 C -0.128 4.128 19 C -0.071 4.071 20 Cl -0.039 7.039 21 C -0.127 4.127 22 C -0.091 4.091 23 C -0.157 4.157 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.006 0.994 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.107 0.893 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.297 5.832 19.672 21.191 hybrid contribution 1.566 -0.573 0.433 1.723 sum -3.731 5.259 20.105 21.114 Atomic orbital electron populations 1.21704 0.93413 1.01974 1.02068 1.21998 0.96892 0.88606 0.99880 1.62007 1.18767 1.17763 1.26541 1.19943 0.86149 0.95236 0.94086 1.21292 0.92988 1.47829 0.92602 0.94302 1.25717 1.02003 0.94860 0.95855 1.70039 1.24776 1.52416 1.11589 0.85907 0.79270 0.79138 0.79844 1.19195 1.17784 1.20755 1.22527 0.99205 0.93506 0.87041 0.87244 1.21166 1.01433 0.96142 0.92994 1.20892 0.98542 0.93804 0.96294 1.20860 0.98715 0.97550 0.94287 1.21187 0.98912 0.97827 0.94920 1.20823 1.02781 0.95148 0.88343 1.98357 1.82651 1.98823 1.24116 1.20587 1.00309 0.97468 0.94328 1.20529 0.98448 0.96289 0.93857 1.21850 1.00707 0.96480 0.96677 0.93183 0.91224 0.91599 0.93131 0.94620 0.99375 0.95298 0.92529 0.90837 0.88674 0.82952 0.82556 0.84533 0.89308 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.87 71.98 0.71 -2.97 16 2 C 0.05 1.90 5.43 86.30 0.47 2.36 16 3 N -0.53 -20.40 4.39 -870.23 -3.82 -24.22 16 4 C 0.17 7.99 2.42 85.56 0.21 8.20 16 5 C -0.51 -29.01 9.11 25.60 0.23 -28.78 16 6 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 7 C 0.01 0.75 5.47 84.65 0.46 1.21 16 8 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 9 Si 0.93 44.21 27.47 68.60 1.88 46.09 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 C 0.09 2.62 3.02 45.82 0.14 2.76 16 14 H 0.11 2.86 6.58 -2.39 -0.02 2.84 16 15 C -0.08 -2.36 6.19 30.52 0.19 -2.17 16 16 C -0.09 -2.53 6.14 -19.59 -0.12 -2.65 16 17 C -0.10 -2.10 10.04 22.30 0.22 -1.88 16 18 C -0.11 -2.24 9.83 22.26 0.22 -2.02 16 19 C -0.04 -1.00 6.32 22.30 0.14 -0.86 16 20 Cl -0.07 -1.37 28.96 -2.72 -0.08 -1.45 16 21 C -0.11 -2.67 9.82 22.32 0.22 -2.45 16 22 C -0.09 -2.48 6.14 -19.59 -0.12 -2.60 16 23 C -0.12 -3.45 5.42 30.51 0.17 -3.28 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.07 1.52 6.83 -2.39 -0.02 1.50 16 27 H 0.05 2.11 7.37 -2.39 -0.02 2.10 16 28 H 0.04 1.14 7.40 -2.39 -0.02 1.12 16 29 H -0.01 -0.53 5.81 -2.39 -0.01 -0.54 16 30 H 0.03 1.34 5.24 -2.38 -0.01 1.33 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.07 2.59 5.99 -2.39 -0.01 2.58 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.07 2.35 5.66 -2.39 -0.01 2.33 16 Total: -1.00 -64.44 314.72 2.42 -62.02 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.00 Total: 11.44 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 3.14 Total: -35.12 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -3.52 Total: -82.99 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -64.44 2.42 -62.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172720652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.726 kcal (2) G-P(sol) polarization free energy of solvation -64.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds