Wall clock time and date at job start Tue Mar 31 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.87400 * 2 1 4 4 C 1.54318 * 109.88696 * 238.82446 * 2 1 3 5 5 H 1.08996 * 110.72538 * 144.41143 * 4 2 1 6 6 C 1.50698 * 110.72221 * 21.13530 * 4 2 1 7 7 C 1.38243 * 120.00689 * 291.52206 * 6 4 2 8 8 C 1.38221 * 120.01064 * 179.76297 * 7 6 4 9 9 C 1.38266 * 120.02622 * 0.50722 * 8 7 6 10 10 C 1.38191 * 120.01482 * 359.74183 * 9 8 7 11 11 C 1.38331 * 120.01008 * 111.78691 * 6 4 2 12 12 Cl 1.73606 * 120.00775 * 359.96383 * 11 6 4 13 13 C 1.55169 * 102.94207 * 262.77747 * 4 2 1 14 14 C 1.55136 * 101.48088 * 324.32853 * 13 4 2 15 15 N 1.47022 * 109.88097 * 121.01334 * 2 1 3 16 16 C 1.36936 * 125.65010 * 300.43789 * 15 2 1 17 17 H 1.08006 * 119.99772 * 16.99229 * 16 15 2 18 18 C 1.38815 * 120.00155 * 196.99027 * 16 15 2 19 19 N 1.31608 * 119.99999 * 28.55324 * 18 16 15 20 20 Si 1.86806 * 119.99842 * 208.55537 * 18 16 15 21 21 H 1.48490 * 109.47010 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.47026 * 60.00020 * 20 18 16 23 23 H 1.48495 * 109.47127 * 300.00057 * 20 18 16 24 24 H 1.09002 * 109.47291 * 303.25949 * 1 2 3 25 25 H 1.09007 * 109.47099 * 63.25894 * 1 2 3 26 26 H 1.09003 * 109.47660 * 183.25889 * 1 2 3 27 27 H 1.08995 * 109.47221 * 179.55902 * 3 2 1 28 28 H 1.08994 * 109.46816 * 299.56188 * 3 2 1 29 29 H 1.08997 * 109.47011 * 59.56020 * 3 2 1 30 30 H 1.07997 * 119.99003 * 359.97438 * 7 6 4 31 31 H 1.07999 * 119.98352 * 180.22181 * 8 7 6 32 32 H 1.07999 * 119.99162 * 179.76840 * 9 8 7 33 33 H 1.07999 * 120.00736 * 179.97438 * 10 9 8 34 34 H 1.08995 * 111.00499 * 82.56597 * 13 4 2 35 35 H 1.08995 * 111.00295 * 206.42100 * 13 4 2 36 36 H 1.08996 * 110.49464 * 278.44915 * 14 13 4 37 37 H 1.09002 * 110.33836 * 156.05825 * 14 13 4 38 38 H 0.97000 * 120.00504 * 6.30266 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0548 -0.7512 -1.2416 5 1 2.9656 -0.2854 -1.6178 6 6 1.0000 -0.8075 -2.3163 7 6 -0.1376 -1.5703 -2.1292 8 6 -1.1075 -1.6181 -3.1129 9 6 -0.9357 -0.9113 -4.2888 10 6 0.2034 -0.1525 -4.4791 11 6 1.1722 -0.1001 -3.4926 12 17 2.6033 0.8534 -3.7306 13 6 2.3518 -2.1705 -0.6892 14 6 2.8613 -1.8454 0.7396 15 7 2.0299 -0.7124 1.1849 16 6 1.7712 -0.3756 2.4868 17 1 0.9519 0.2884 2.7202 18 6 2.5618 -0.8877 3.5065 19 7 3.8184 -1.2000 3.2711 20 14 1.8420 -1.1334 5.2127 21 1 2.8832 -1.6891 6.1138 22 1 0.6988 -2.0782 5.1362 23 1 1.3715 0.1709 5.7440 24 1 -0.3634 0.5636 0.8593 25 1 -0.3634 0.4624 -0.9178 26 1 -0.3634 -1.0260 0.0584 27 1 3.1399 1.4313 0.0079 28 1 1.6967 1.9529 -0.8939 29 1 1.6839 1.9576 0.8860 30 1 -0.2701 -2.1263 -1.2129 31 1 -1.9977 -2.2114 -2.9647 32 1 -1.6922 -0.9520 -5.0585 33 1 0.3376 0.3992 -5.3978 34 1 1.4452 -2.7746 -0.6564 35 1 3.1270 -2.6636 -1.2757 36 1 3.9123 -1.5579 0.7138 37 1 2.7177 -2.7028 1.3972 38 1 4.2183 -0.9883 2.4131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175714439.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:03 Heat of formation + Delta-G solvation = 40.489202 kcal Electronic energy + Delta-G solvation = -20471.797618 eV Core-core repulsion = 17533.499611 eV Total energy + Delta-G solvation = -2938.298006 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.13071 -37.79566 -36.33396 -33.47601 -31.57235 -31.00781 -30.72186 -28.25612 -26.54759 -25.15244 -23.63798 -22.50163 -21.85328 -20.10732 -18.73410 -17.08826 -16.60428 -15.73231 -15.31320 -14.69030 -14.20288 -13.93526 -13.72077 -13.59966 -13.24434 -12.85744 -12.66472 -12.26005 -11.97953 -11.82043 -11.61348 -11.34385 -11.31121 -11.08169 -10.79157 -10.68068 -10.47579 -10.30521 -10.23918 -9.95900 -9.87427 -9.80999 -9.45187 -8.72779 -8.45722 -8.33620 -6.89696 -6.02800 -3.06324 1.22064 1.32733 2.25041 3.52823 3.56559 3.67418 3.74304 4.59821 4.78034 4.81312 4.98853 5.20126 5.27330 5.37027 5.39731 5.44865 5.60984 5.68206 5.76926 5.98115 6.01955 6.05799 6.15878 6.25523 6.26602 6.33124 6.38803 6.46727 6.59358 6.64919 6.68271 6.72058 6.86489 6.99925 7.01560 7.09021 7.21340 7.89579 8.55746 9.10066 9.89005 10.45489 11.29652 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027070 B = 0.005646 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.107878 B = 4958.113716 C = 5343.261855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.193 3.807 3 C -0.143 4.143 4 C -0.065 4.065 5 H 0.090 0.910 6 C -0.041 4.041 7 C -0.097 4.097 8 C -0.120 4.120 9 C -0.121 4.121 10 C -0.115 4.115 11 C -0.037 4.037 12 Cl -0.072 7.072 13 C -0.129 4.129 14 C 0.145 3.855 15 N -0.589 5.589 16 C -0.326 4.326 17 H 0.064 0.936 18 C -0.026 4.026 19 N -0.918 5.918 20 Si 1.060 2.940 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.295 1.295 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.026 0.974 37 H 0.051 0.949 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 0.167 -15.400 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.104 3.896 3 C -0.202 4.202 4 C -0.084 4.084 5 H 0.108 0.892 6 C -0.042 4.042 7 C -0.115 4.115 8 C -0.138 4.138 9 C -0.139 4.139 10 C -0.134 4.134 11 C -0.063 4.063 12 Cl -0.043 7.043 13 C -0.167 4.167 14 C 0.019 3.981 15 N -0.314 5.314 16 C -0.453 4.453 17 H 0.081 0.919 18 C -0.228 4.228 19 N -0.559 5.559 20 Si 0.890 3.110 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.222 1.222 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.989 -0.311 -13.764 15.440 hybrid contribution -0.222 0.886 -1.552 1.801 sum -7.211 0.575 -15.316 16.938 Atomic orbital electron populations 1.22444 0.97575 1.01036 0.99737 1.20170 0.92476 0.90883 0.86031 1.22128 1.00625 0.97571 0.99892 1.21388 0.96183 0.98033 0.92792 0.89189 1.19705 0.96273 0.94955 0.93272 1.21295 0.92695 0.98311 0.99160 1.21215 0.99290 0.99585 0.93686 1.21002 0.97217 0.97725 0.97943 1.20947 0.93532 1.00425 0.98484 1.20829 0.90344 0.98768 0.96386 1.98352 1.38508 1.70795 1.96625 1.23011 1.00819 0.94731 0.98186 1.21560 0.94017 0.91382 0.91109 1.44649 1.58442 1.27624 1.00657 1.19655 1.12435 1.31917 0.81336 0.91862 1.25629 0.94227 1.00394 1.02532 1.70764 1.10252 1.49114 1.25800 0.83594 0.75176 0.76197 0.76051 1.21223 1.22278 1.22182 0.93229 0.93995 0.92630 0.93446 0.94406 0.92807 0.84380 0.85723 0.85643 0.85444 0.91445 0.91869 0.95643 0.93026 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 6.95 37.15 0.26 -2.54 16 2 C 0.19 3.92 0.91 -130.85 -0.12 3.80 16 3 C -0.14 -2.90 8.45 37.16 0.31 -2.58 16 4 C -0.07 -1.15 2.49 -89.93 -0.22 -1.37 16 5 H 0.09 1.62 6.11 -51.93 -0.32 1.31 16 6 C -0.04 -0.62 3.87 -104.59 -0.40 -1.03 16 7 C -0.10 -1.34 6.48 -39.59 -0.26 -1.59 16 8 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 9 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 10 C -0.12 -1.36 9.83 -39.55 -0.39 -1.75 16 11 C -0.04 -0.52 6.31 -39.50 -0.25 -0.77 16 12 Cl -0.07 -1.00 27.09 -51.86 -1.40 -2.40 16 13 C -0.13 -2.34 6.43 -24.45 -0.16 -2.50 16 14 C 0.14 3.33 5.32 -2.41 -0.01 3.32 16 15 N -0.59 -14.41 2.77 -155.23 -0.43 -14.84 16 16 C -0.33 -8.95 9.23 -15.06 -0.14 -9.09 16 17 H 0.06 1.76 7.60 -52.48 -0.40 1.36 16 18 C -0.03 -0.74 5.08 -17.43 -0.09 -0.83 16 19 N -0.92 -27.61 12.92 55.49 0.72 -26.90 16 20 Si 1.06 25.42 30.00 -169.99 -5.10 20.32 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.30 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H 0.05 0.99 7.73 -51.93 -0.40 0.59 16 25 H 0.04 0.71 6.46 -51.93 -0.34 0.38 16 26 H 0.05 1.01 5.76 -51.93 -0.30 0.71 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.16 8.02 -51.93 -0.42 0.74 16 30 H 0.14 1.97 5.05 -52.49 -0.27 1.71 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.07 1.15 6.25 -51.93 -0.32 0.83 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.63 6.83 -51.93 -0.35 0.28 16 37 H 0.05 1.29 7.95 -51.93 -0.41 0.88 16 38 H 0.27 8.11 6.12 -40.82 -0.25 7.86 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -29.88 308.05 -8.95 -38.83 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.11 Total: 0.72 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.26 Total: -20.37 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.29 Total: -41.73 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.10 Total: 20.32 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.40 Total: -2.40 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.88 -8.95 -38.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175714439.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.319 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds