Wall clock time and date at job start Tue Mar 31 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.87400 * 2 1 4 4 C 1.54318 * 109.88696 * 238.82446 * 2 1 3 5 5 H 1.08996 * 110.72538 * 144.41143 * 4 2 1 6 6 C 1.50698 * 110.72221 * 21.13530 * 4 2 1 7 7 C 1.38243 * 120.00689 * 291.52206 * 6 4 2 8 8 C 1.38221 * 120.01064 * 179.76297 * 7 6 4 9 9 C 1.38266 * 120.02622 * 0.50722 * 8 7 6 10 10 C 1.38191 * 120.01482 * 359.74183 * 9 8 7 11 11 C 1.38331 * 120.01008 * 111.78691 * 6 4 2 12 12 Cl 1.73606 * 120.00775 * 359.96383 * 11 6 4 13 13 C 1.55169 * 102.94207 * 262.77747 * 4 2 1 14 14 C 1.55136 * 101.48088 * 324.32853 * 13 4 2 15 15 N 1.47022 * 109.88097 * 121.01334 * 2 1 3 16 16 C 1.36936 * 125.65010 * 300.43789 * 15 2 1 17 17 H 1.08006 * 119.99772 * 16.99229 * 16 15 2 18 18 C 1.38815 * 120.00155 * 196.99027 * 16 15 2 19 19 N 1.31608 * 119.99999 * 28.55324 * 18 16 15 20 20 Si 1.86806 * 119.99842 * 208.55537 * 18 16 15 21 21 H 1.48490 * 109.47010 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.47026 * 60.00020 * 20 18 16 23 23 H 1.48495 * 109.47127 * 300.00057 * 20 18 16 24 24 H 1.09002 * 109.47291 * 303.25949 * 1 2 3 25 25 H 1.09007 * 109.47099 * 63.25894 * 1 2 3 26 26 H 1.09003 * 109.47660 * 183.25889 * 1 2 3 27 27 H 1.08995 * 109.47221 * 179.55902 * 3 2 1 28 28 H 1.08994 * 109.46816 * 299.56188 * 3 2 1 29 29 H 1.08997 * 109.47011 * 59.56020 * 3 2 1 30 30 H 1.07997 * 119.99003 * 359.97438 * 7 6 4 31 31 H 1.07999 * 119.98352 * 180.22181 * 8 7 6 32 32 H 1.07999 * 119.99162 * 179.76840 * 9 8 7 33 33 H 1.07999 * 120.00736 * 179.97438 * 10 9 8 34 34 H 1.08995 * 111.00499 * 82.56597 * 13 4 2 35 35 H 1.08995 * 111.00295 * 206.42100 * 13 4 2 36 36 H 1.08996 * 110.49464 * 278.44915 * 14 13 4 37 37 H 1.09002 * 110.33836 * 156.05825 * 14 13 4 38 38 H 0.97000 * 120.00504 * 6.30266 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0548 -0.7512 -1.2416 5 1 2.9656 -0.2854 -1.6178 6 6 1.0000 -0.8075 -2.3163 7 6 -0.1376 -1.5703 -2.1292 8 6 -1.1075 -1.6181 -3.1129 9 6 -0.9357 -0.9113 -4.2888 10 6 0.2034 -0.1525 -4.4791 11 6 1.1722 -0.1001 -3.4926 12 17 2.6033 0.8534 -3.7306 13 6 2.3518 -2.1705 -0.6892 14 6 2.8613 -1.8454 0.7396 15 7 2.0299 -0.7124 1.1849 16 6 1.7712 -0.3756 2.4868 17 1 0.9519 0.2884 2.7202 18 6 2.5618 -0.8877 3.5065 19 7 3.8184 -1.2000 3.2711 20 14 1.8420 -1.1334 5.2127 21 1 2.8832 -1.6891 6.1138 22 1 0.6988 -2.0782 5.1362 23 1 1.3715 0.1709 5.7440 24 1 -0.3634 0.5636 0.8593 25 1 -0.3634 0.4624 -0.9178 26 1 -0.3634 -1.0260 0.0584 27 1 3.1399 1.4313 0.0079 28 1 1.6967 1.9529 -0.8939 29 1 1.6839 1.9576 0.8860 30 1 -0.2701 -2.1263 -1.2129 31 1 -1.9977 -2.2114 -2.9647 32 1 -1.6922 -0.9520 -5.0585 33 1 0.3376 0.3992 -5.3978 34 1 1.4452 -2.7746 -0.6564 35 1 3.1270 -2.6636 -1.2757 36 1 3.9123 -1.5579 0.7138 37 1 2.7177 -2.7028 1.3972 38 1 4.2183 -0.9883 2.4131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175714439.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:02 Heat of formation + Delta-G solvation = 25.515426 kcal Electronic energy + Delta-G solvation = -20472.446929 eV Core-core repulsion = 17533.499611 eV Total energy + Delta-G solvation = -2938.947318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40084 -39.16983 -37.36405 -35.29968 -33.15831 -32.58011 -31.70072 -29.92379 -28.09814 -26.75538 -25.49424 -23.63661 -23.00909 -21.76778 -20.35771 -18.77786 -17.89972 -16.96698 -16.55612 -16.14384 -15.71322 -15.49284 -15.24421 -14.96416 -14.76327 -14.23548 -14.12410 -13.77238 -13.50982 -13.31396 -13.02840 -12.76374 -12.59816 -12.44127 -12.28204 -12.13736 -12.06252 -11.98742 -11.86191 -11.74712 -11.49431 -11.34289 -11.25845 -10.44508 -9.69976 -9.51002 -8.95582 -8.24630 -5.24055 0.25625 0.36756 1.23380 1.57554 1.65265 1.83671 2.65882 2.72307 3.23953 3.39829 3.66659 3.75274 3.93571 4.02350 4.17024 4.27495 4.35794 4.39135 4.45087 4.46701 4.63069 4.74080 4.76708 4.79444 4.84889 4.95767 5.02730 5.06024 5.10977 5.16912 5.29085 5.33885 5.37863 5.51875 5.53924 5.65289 5.78926 5.94119 6.38555 6.99045 7.79222 8.39242 9.07226 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027070 B = 0.005646 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.107878 B = 4958.113716 C = 5343.261855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.181 3.819 3 C -0.134 4.134 4 C -0.052 4.052 5 H 0.082 0.918 6 C -0.062 4.062 7 C -0.107 4.107 8 C -0.114 4.114 9 C -0.107 4.107 10 C -0.114 4.114 11 C -0.048 4.048 12 Cl -0.080 7.080 13 C -0.115 4.115 14 C 0.148 3.852 15 N -0.606 5.606 16 C -0.322 4.322 17 H 0.057 0.943 18 C -0.082 4.082 19 N -0.949 5.949 20 Si 1.110 2.890 21 H -0.295 1.295 22 H -0.281 1.281 23 H -0.278 1.278 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.129 0.871 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.082 0.918 36 H -0.001 1.001 37 H 0.022 0.978 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 -0.042 -17.715 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.094 3.906 3 C -0.193 4.193 4 C -0.071 4.071 5 H 0.100 0.900 6 C -0.063 4.063 7 C -0.125 4.125 8 C -0.132 4.132 9 C -0.125 4.125 10 C -0.133 4.133 11 C -0.074 4.074 12 Cl -0.052 7.052 13 C -0.153 4.153 14 C 0.022 3.978 15 N -0.331 5.331 16 C -0.451 4.451 17 H 0.075 0.925 18 C -0.278 4.278 19 N -0.593 5.593 20 Si 0.935 3.065 21 H -0.221 1.221 22 H -0.208 1.208 23 H -0.204 1.204 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.147 0.853 31 H 0.170 0.830 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.017 0.983 37 H 0.040 0.960 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.669 -0.502 -16.114 18.799 hybrid contribution 0.545 0.984 -0.961 1.480 sum -9.123 0.482 -17.076 19.366 Atomic orbital electron populations 1.22291 0.95897 1.01264 0.99852 1.20445 0.93583 0.90698 0.85871 1.22028 0.99324 0.97899 1.00051 1.21154 0.96887 0.96588 0.92429 0.89999 1.19445 0.96363 0.97322 0.93171 1.21286 0.93042 0.98425 0.99788 1.21541 0.99311 0.99252 0.93058 1.21452 0.97145 0.95704 0.98196 1.21278 0.93105 1.00354 0.98553 1.20979 0.90771 0.98953 0.96727 1.98351 1.39191 1.71008 1.96605 1.22911 1.01745 0.95784 0.94842 1.21434 0.92750 0.89941 0.93639 1.44885 1.58390 1.28771 1.01059 1.19848 1.11383 1.30833 0.83060 0.92494 1.26935 0.94028 1.00747 1.06052 1.70881 1.11480 1.51702 1.25234 0.82913 0.74568 0.76967 0.72029 1.22108 1.20760 1.20439 0.95220 0.91815 0.92132 0.95281 0.91864 0.94863 0.85306 0.82980 0.82009 0.83304 0.90085 0.89920 0.98314 0.95993 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 6.95 71.98 0.50 -4.41 16 2 C 0.18 7.39 0.91 3.95 0.00 7.40 16 3 C -0.13 -5.51 8.45 71.98 0.61 -4.90 16 4 C -0.05 -1.79 2.49 -10.35 -0.03 -1.82 16 5 H 0.08 2.96 6.11 -2.39 -0.01 2.94 16 6 C -0.06 -1.75 3.87 -19.84 -0.08 -1.83 16 7 C -0.11 -2.66 6.48 22.27 0.14 -2.51 16 8 C -0.11 -2.08 10.05 22.27 0.22 -1.86 16 9 C -0.11 -1.71 10.05 22.27 0.22 -1.49 16 10 C -0.11 -2.21 9.83 22.29 0.22 -2.00 16 11 C -0.05 -1.21 6.31 22.32 0.14 -1.07 16 12 Cl -0.08 -2.12 27.09 -2.72 -0.07 -2.19 16 13 C -0.11 -4.14 6.43 32.07 0.21 -3.93 16 14 C 0.15 7.10 5.32 86.93 0.46 7.57 16 15 N -0.61 -30.55 2.77 -645.04 -1.79 -32.34 16 16 C -0.32 -18.22 9.23 84.03 0.78 -17.44 16 17 H 0.06 3.23 7.60 -2.91 -0.02 3.21 16 18 C -0.08 -4.78 5.08 84.86 0.43 -4.35 16 19 N -0.95 -59.53 12.92 21.65 0.28 -59.25 16 20 Si 1.11 52.30 30.00 68.60 2.06 54.35 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H 0.03 1.16 7.73 -2.39 -0.02 1.15 16 25 H 0.06 2.03 6.46 -2.38 -0.02 2.02 16 26 H 0.06 2.14 5.76 -2.39 -0.01 2.12 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.03 1.45 8.02 -2.39 -0.02 1.44 16 30 H 0.13 3.39 5.05 -2.91 -0.01 3.38 16 31 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.08 2.70 6.25 -2.39 -0.01 2.69 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.00 -0.05 6.83 -2.39 -0.02 -0.06 16 37 H 0.02 1.15 7.95 -2.39 -0.02 1.13 16 38 H 0.25 16.20 6.12 -92.71 -0.57 15.63 16 Total: -1.00 -67.17 308.05 5.57 -61.60 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.26 Total: 10.46 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.84 Total: -32.64 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.51 Total: -91.59 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.06 Total: 54.35 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.07 Total: -2.19 kcal Total: -67.17 5.57 -61.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175714439.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.119 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds